Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04356

Experiment: mer MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04355 and OHPLBJKB_04356 are separated by 226 nucleotidesOHPLBJKB_04356 and OHPLBJKB_04357 are separated by 139 nucleotides OHPLBJKB_04355: OHPLBJKB_04355 - hypothetical protein, at 6,020 to 10,135 _04355 OHPLBJKB_04356: OHPLBJKB_04356 - hypothetical protein, at 10,362 to 10,631 _04356 OHPLBJKB_04357: OHPLBJKB_04357 - hypothetical protein, at 10,771 to 16,080 _04357 Position (kb) 10 11Strain fitness (log2 ratio) -1 0 1 2at 9.413 kb on - strand, within OHPLBJKB_04355at 9.457 kb on + strand, within OHPLBJKB_04355at 9.457 kb on + strand, within OHPLBJKB_04355at 9.504 kb on + strand, within OHPLBJKB_04355at 9.504 kb on + strand, within OHPLBJKB_04355at 9.512 kb on + strand, within OHPLBJKB_04355at 9.527 kb on + strand, within OHPLBJKB_04355at 9.528 kb on - strand, within OHPLBJKB_04355at 9.528 kb on - strand, within OHPLBJKB_04355at 9.528 kb on - strand, within OHPLBJKB_04355at 9.532 kb on + strand, within OHPLBJKB_04355at 9.569 kb on + strand, within OHPLBJKB_04355at 9.570 kb on - strand, within OHPLBJKB_04355at 9.570 kb on - strand, within OHPLBJKB_04355at 9.570 kb on - strand, within OHPLBJKB_04355at 9.659 kb on - strand, within OHPLBJKB_04355at 9.680 kb on + strand, within OHPLBJKB_04355at 9.714 kb on - strand, within OHPLBJKB_04355at 9.734 kb on + strandat 9.734 kb on + strandat 9.735 kb on - strandat 9.735 kb on - strandat 9.735 kb on - strandat 9.735 kb on - strandat 9.788 kb on + strandat 9.796 kb on + strandat 9.796 kb on + strandat 9.808 kb on + strandat 9.865 kb on + strandat 9.937 kb on + strandat 9.938 kb on - strandat 10.167 kb on - strandat 10.220 kb on + strandat 10.436 kb on - strand, within OHPLBJKB_04356at 10.559 kb on + strand, within OHPLBJKB_04356at 10.677 kb on + strandat 10.677 kb on + strandat 10.704 kb on + strandat 10.801 kb on - strandat 11.119 kb on - strandat 11.225 kb on + strandat 11.370 kb on - strand, within OHPLBJKB_04357at 11.475 kb on + strand, within OHPLBJKB_04357

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI10
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9,413 - OHPLBJKB_04355 0.82 -0.1
9,457 + OHPLBJKB_04355 0.84 -1.5
9,457 + OHPLBJKB_04355 0.84 +1.2
9,504 + OHPLBJKB_04355 0.85 +0.1
9,504 + OHPLBJKB_04355 0.85 -1.3
9,512 + OHPLBJKB_04355 0.85 +0.6
9,527 + OHPLBJKB_04355 0.85 +0.1
9,528 - OHPLBJKB_04355 0.85 +0.9
9,528 - OHPLBJKB_04355 0.85 +1.3
9,528 - OHPLBJKB_04355 0.85 -0.7
9,532 + OHPLBJKB_04355 0.85 -0.1
9,569 + OHPLBJKB_04355 0.86 -0.1
9,570 - OHPLBJKB_04355 0.86 +1.3
9,570 - OHPLBJKB_04355 0.86 -0.3
9,570 - OHPLBJKB_04355 0.86 +0.1
9,659 - OHPLBJKB_04355 0.88 +2.1
9,680 + OHPLBJKB_04355 0.89 -1.7
9,714 - OHPLBJKB_04355 0.90 +0.2
9,734 + -0.2
9,734 + +0.9
9,735 - +0.4
9,735 - +1.4
9,735 - -1.1
9,735 - -0.9
9,788 + -0.9
9,796 + -0.7
9,796 + +0.5
9,808 + -0.1
9,865 + -1.7
9,937 + +0.5
9,938 - -0.1
10,167 - -0.9
10,220 + +0.9
10,436 - OHPLBJKB_04356 0.27 +1.5
10,559 + OHPLBJKB_04356 0.73 -0.1
10,677 + -0.5
10,677 + +0.5
10,704 + -0.0
10,801 - -1.1
11,119 - -0.1
11,225 + -0.1
11,370 - OHPLBJKB_04357 0.11 +0.5
11,475 + OHPLBJKB_04357 0.13 +0.6

Or see this region's nucleotide sequence