Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01979

Experiment: mer MOI10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_01978 and OHPLBJKB_01979 are separated by 9 nucleotidesOHPLBJKB_01979 and OHPLBJKB_01980 overlap by 1 nucleotidesOHPLBJKB_01980 and OHPLBJKB_01981 are separated by 14 nucleotides OHPLBJKB_01978: OHPLBJKB_01978 - Protein YnjB, at 2,055,305 to 2,056,471 _01978 OHPLBJKB_01979: OHPLBJKB_01979 - hypothetical protein, at 2,056,481 to 2,057,029 _01979 OHPLBJKB_01980: OHPLBJKB_01980 - TVP38/TMEM64 family inner membrane protein YdjZ, at 2,057,029 to 2,057,736 _01980 OHPLBJKB_01981: OHPLBJKB_01981 - hypothetical protein, at 2,057,751 to 2,058,428 _01981 Position (kb) 2056 2057 2058Strain fitness (log2 ratio) -2 -1 0 1 2at 2055.527 kb on + strand, within OHPLBJKB_01978at 2055.527 kb on + strand, within OHPLBJKB_01978at 2055.528 kb on - strand, within OHPLBJKB_01978at 2055.528 kb on - strand, within OHPLBJKB_01978at 2055.615 kb on + strand, within OHPLBJKB_01978at 2055.615 kb on + strand, within OHPLBJKB_01978at 2055.763 kb on - strand, within OHPLBJKB_01978at 2055.784 kb on - strand, within OHPLBJKB_01978at 2055.865 kb on + strand, within OHPLBJKB_01978at 2055.919 kb on - strand, within OHPLBJKB_01978at 2055.988 kb on + strand, within OHPLBJKB_01978at 2056.095 kb on + strand, within OHPLBJKB_01978at 2056.151 kb on + strand, within OHPLBJKB_01978at 2056.151 kb on + strand, within OHPLBJKB_01978at 2056.152 kb on - strand, within OHPLBJKB_01978at 2056.208 kb on - strand, within OHPLBJKB_01978at 2056.208 kb on - strand, within OHPLBJKB_01978at 2056.483 kb on - strandat 2056.541 kb on - strand, within OHPLBJKB_01979at 2056.541 kb on - strand, within OHPLBJKB_01979at 2056.541 kb on - strand, within OHPLBJKB_01979at 2056.844 kb on + strand, within OHPLBJKB_01979at 2056.844 kb on + strand, within OHPLBJKB_01979at 2056.845 kb on - strand, within OHPLBJKB_01979at 2056.845 kb on - strand, within OHPLBJKB_01979at 2056.906 kb on - strand, within OHPLBJKB_01979at 2056.906 kb on - strand, within OHPLBJKB_01979at 2056.906 kb on - strand, within OHPLBJKB_01979at 2057.074 kb on - strandat 2057.104 kb on - strand, within OHPLBJKB_01980at 2057.140 kb on + strand, within OHPLBJKB_01980at 2057.141 kb on - strand, within OHPLBJKB_01980at 2057.141 kb on - strand, within OHPLBJKB_01980at 2057.162 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.169 kb on + strand, within OHPLBJKB_01980at 2057.170 kb on - strand, within OHPLBJKB_01980at 2057.170 kb on - strand, within OHPLBJKB_01980at 2057.170 kb on - strand, within OHPLBJKB_01980at 2057.170 kb on - strand, within OHPLBJKB_01980at 2057.243 kb on + strand, within OHPLBJKB_01980at 2057.244 kb on - strand, within OHPLBJKB_01980at 2057.571 kb on + strand, within OHPLBJKB_01980at 2057.581 kb on + strand, within OHPLBJKB_01980at 2057.581 kb on + strand, within OHPLBJKB_01980at 2057.581 kb on + strand, within OHPLBJKB_01980at 2057.581 kb on + strand, within OHPLBJKB_01980at 2057.581 kb on + strand, within OHPLBJKB_01980at 2057.582 kb on - strand, within OHPLBJKB_01980at 2057.670 kb on + strandat 2057.697 kb on + strandat 2057.698 kb on - strandat 2057.698 kb on - strandat 2057.703 kb on - strandat 2057.766 kb on - strandat 2057.825 kb on + strand, within OHPLBJKB_01981at 2057.854 kb on + strand, within OHPLBJKB_01981at 2057.854 kb on + strand, within OHPLBJKB_01981at 2057.854 kb on + strand, within OHPLBJKB_01981at 2057.854 kb on + strand, within OHPLBJKB_01981at 2057.855 kb on - strand, within OHPLBJKB_01981at 2057.855 kb on - strand, within OHPLBJKB_01981at 2057.855 kb on - strand, within OHPLBJKB_01981at 2057.855 kb on - strand, within OHPLBJKB_01981at 2057.860 kb on + strand, within OHPLBJKB_01981at 2057.860 kb on + strand, within OHPLBJKB_01981at 2057.860 kb on + strand, within OHPLBJKB_01981at 2057.860 kb on + strand, within OHPLBJKB_01981at 2057.860 kb on + strand, within OHPLBJKB_01981at 2057.861 kb on - strand, within OHPLBJKB_01981at 2057.861 kb on - strand, within OHPLBJKB_01981at 2057.861 kb on - strand, within OHPLBJKB_01981at 2057.861 kb on - strand, within OHPLBJKB_01981at 2057.861 kb on - strand, within OHPLBJKB_01981at 2057.908 kb on - strand, within OHPLBJKB_01981at 2058.007 kb on + strand, within OHPLBJKB_01981at 2058.008 kb on - strand, within OHPLBJKB_01981at 2058.008 kb on - strand, within OHPLBJKB_01981

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI10
remove
2,055,527 + OHPLBJKB_01978 0.19 +0.1
2,055,527 + OHPLBJKB_01978 0.19 +1.1
2,055,528 - OHPLBJKB_01978 0.19 -1.0
2,055,528 - OHPLBJKB_01978 0.19 -1.1
2,055,615 + OHPLBJKB_01978 0.27 -0.3
2,055,615 + OHPLBJKB_01978 0.27 -0.5
2,055,763 - OHPLBJKB_01978 0.39 +0.7
2,055,784 - OHPLBJKB_01978 0.41 -0.2
2,055,865 + OHPLBJKB_01978 0.48 +0.5
2,055,919 - OHPLBJKB_01978 0.53 +0.7
2,055,988 + OHPLBJKB_01978 0.59 -2.3
2,056,095 + OHPLBJKB_01978 0.68 -0.0
2,056,151 + OHPLBJKB_01978 0.72 -1.7
2,056,151 + OHPLBJKB_01978 0.72 -0.4
2,056,152 - OHPLBJKB_01978 0.73 -0.6
2,056,208 - OHPLBJKB_01978 0.77 +0.5
2,056,208 - OHPLBJKB_01978 0.77 +0.3
2,056,483 - -0.2
2,056,541 - OHPLBJKB_01979 0.11 -1.0
2,056,541 - OHPLBJKB_01979 0.11 +0.4
2,056,541 - OHPLBJKB_01979 0.11 -0.4
2,056,844 + OHPLBJKB_01979 0.66 -0.9
2,056,844 + OHPLBJKB_01979 0.66 -1.8
2,056,845 - OHPLBJKB_01979 0.66 +1.0
2,056,845 - OHPLBJKB_01979 0.66 +1.0
2,056,906 - OHPLBJKB_01979 0.77 -1.0
2,056,906 - OHPLBJKB_01979 0.77 -1.0
2,056,906 - OHPLBJKB_01979 0.77 +0.0
2,057,074 - -1.0
2,057,104 - OHPLBJKB_01980 0.11 -0.3
2,057,140 + OHPLBJKB_01980 0.16 -0.3
2,057,141 - OHPLBJKB_01980 0.16 -0.1
2,057,141 - OHPLBJKB_01980 0.16 -0.9
2,057,162 + OHPLBJKB_01980 0.19 -0.0
2,057,169 + OHPLBJKB_01980 0.20 +0.1
2,057,169 + OHPLBJKB_01980 0.20 +0.3
2,057,169 + OHPLBJKB_01980 0.20 -0.3
2,057,169 + OHPLBJKB_01980 0.20 +0.0
2,057,169 + OHPLBJKB_01980 0.20 +0.3
2,057,169 + OHPLBJKB_01980 0.20 +0.8
2,057,170 - OHPLBJKB_01980 0.20 +0.4
2,057,170 - OHPLBJKB_01980 0.20 +0.1
2,057,170 - OHPLBJKB_01980 0.20 +0.1
2,057,170 - OHPLBJKB_01980 0.20 +0.1
2,057,243 + OHPLBJKB_01980 0.30 +0.5
2,057,244 - OHPLBJKB_01980 0.30 -1.0
2,057,571 + OHPLBJKB_01980 0.77 -1.4
2,057,581 + OHPLBJKB_01980 0.78 -0.7
2,057,581 + OHPLBJKB_01980 0.78 -1.5
2,057,581 + OHPLBJKB_01980 0.78 -0.1
2,057,581 + OHPLBJKB_01980 0.78 +0.0
2,057,581 + OHPLBJKB_01980 0.78 -0.7
2,057,582 - OHPLBJKB_01980 0.78 +0.3
2,057,670 + -0.2
2,057,697 + +0.1
2,057,698 - +0.3
2,057,698 - -1.3
2,057,703 - -0.5
2,057,766 - +0.0
2,057,825 + OHPLBJKB_01981 0.11 +1.1
2,057,854 + OHPLBJKB_01981 0.15 +1.0
2,057,854 + OHPLBJKB_01981 0.15 -0.8
2,057,854 + OHPLBJKB_01981 0.15 +0.0
2,057,854 + OHPLBJKB_01981 0.15 +0.3
2,057,855 - OHPLBJKB_01981 0.15 +0.4
2,057,855 - OHPLBJKB_01981 0.15 -0.1
2,057,855 - OHPLBJKB_01981 0.15 +1.8
2,057,855 - OHPLBJKB_01981 0.15 +0.6
2,057,860 + OHPLBJKB_01981 0.16 +0.8
2,057,860 + OHPLBJKB_01981 0.16 -1.2
2,057,860 + OHPLBJKB_01981 0.16 +0.4
2,057,860 + OHPLBJKB_01981 0.16 -1.1
2,057,860 + OHPLBJKB_01981 0.16 +0.8
2,057,861 - OHPLBJKB_01981 0.16 -0.2
2,057,861 - OHPLBJKB_01981 0.16 +1.7
2,057,861 - OHPLBJKB_01981 0.16 +0.6
2,057,861 - OHPLBJKB_01981 0.16 +0.5
2,057,861 - OHPLBJKB_01981 0.16 -0.4
2,057,908 - OHPLBJKB_01981 0.23 +0.6
2,058,007 + OHPLBJKB_01981 0.38 +0.6
2,058,008 - OHPLBJKB_01981 0.38 -0.6
2,058,008 - OHPLBJKB_01981 0.38 +0.1

Or see this region's nucleotide sequence