Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01537

Experiment: mer MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01536 and OHPLBJKB_01537 are separated by 117 nucleotidesOHPLBJKB_01537 and OHPLBJKB_01538 are separated by 222 nucleotidesOHPLBJKB_01538 and OHPLBJKB_01539 are separated by 154 nucleotides OHPLBJKB_01536: OHPLBJKB_01536 - Zinc-binding GTPase YeiR, at 1,599,633 to 1,600,619 _01536 OHPLBJKB_01537: OHPLBJKB_01537 - Mannitol 2-dehydrogenase, at 1,600,737 to 1,602,203 _01537 OHPLBJKB_01538: OHPLBJKB_01538 - Elongation factor P-like protein, at 1,602,426 to 1,602,998 _01538 OHPLBJKB_01539: OHPLBJKB_01539 - hypothetical protein, at 1,603,153 to 1,603,407 _01539 Position (kb) 1600 1601 1602 1603Strain fitness (log2 ratio) -2 -1 0 1 2at 1599.800 kb on + strand, within OHPLBJKB_01536at 1599.908 kb on - strand, within OHPLBJKB_01536at 1599.960 kb on + strand, within OHPLBJKB_01536at 1599.961 kb on - strand, within OHPLBJKB_01536at 1600.086 kb on + strand, within OHPLBJKB_01536at 1600.087 kb on - strand, within OHPLBJKB_01536at 1600.164 kb on - strand, within OHPLBJKB_01536at 1600.164 kb on - strand, within OHPLBJKB_01536at 1600.164 kb on - strand, within OHPLBJKB_01536at 1600.278 kb on + strand, within OHPLBJKB_01536at 1600.279 kb on - strand, within OHPLBJKB_01536at 1600.279 kb on - strand, within OHPLBJKB_01536at 1600.383 kb on + strand, within OHPLBJKB_01536at 1600.384 kb on - strand, within OHPLBJKB_01536at 1600.388 kb on + strand, within OHPLBJKB_01536at 1600.388 kb on + strand, within OHPLBJKB_01536at 1600.388 kb on + strand, within OHPLBJKB_01536at 1600.398 kb on + strand, within OHPLBJKB_01536at 1600.411 kb on - strand, within OHPLBJKB_01536at 1600.411 kb on - strand, within OHPLBJKB_01536at 1600.634 kb on - strandat 1600.647 kb on - strandat 1600.755 kb on + strandat 1600.755 kb on + strandat 1600.756 kb on - strandat 1600.782 kb on + strandat 1600.829 kb on + strandat 1601.043 kb on + strand, within OHPLBJKB_01537at 1601.044 kb on - strand, within OHPLBJKB_01537at 1601.044 kb on - strand, within OHPLBJKB_01537at 1601.111 kb on + strand, within OHPLBJKB_01537at 1601.111 kb on + strand, within OHPLBJKB_01537at 1601.111 kb on + strand, within OHPLBJKB_01537at 1601.111 kb on + strand, within OHPLBJKB_01537at 1601.112 kb on - strand, within OHPLBJKB_01537at 1601.145 kb on + strand, within OHPLBJKB_01537at 1601.146 kb on - strand, within OHPLBJKB_01537at 1601.146 kb on - strand, within OHPLBJKB_01537at 1601.146 kb on - strand, within OHPLBJKB_01537at 1601.146 kb on - strand, within OHPLBJKB_01537at 1601.146 kb on - strand, within OHPLBJKB_01537at 1601.159 kb on - strand, within OHPLBJKB_01537at 1601.159 kb on - strand, within OHPLBJKB_01537at 1601.214 kb on + strand, within OHPLBJKB_01537at 1601.294 kb on - strand, within OHPLBJKB_01537at 1601.319 kb on - strand, within OHPLBJKB_01537at 1601.370 kb on + strand, within OHPLBJKB_01537at 1601.562 kb on + strand, within OHPLBJKB_01537at 1601.563 kb on - strand, within OHPLBJKB_01537at 1601.748 kb on + strand, within OHPLBJKB_01537at 1601.749 kb on - strand, within OHPLBJKB_01537at 1601.749 kb on - strand, within OHPLBJKB_01537at 1601.759 kb on + strand, within OHPLBJKB_01537at 1601.772 kb on - strand, within OHPLBJKB_01537at 1601.804 kb on + strand, within OHPLBJKB_01537at 1601.804 kb on + strand, within OHPLBJKB_01537at 1601.804 kb on + strand, within OHPLBJKB_01537at 1601.804 kb on + strand, within OHPLBJKB_01537at 1601.805 kb on - strand, within OHPLBJKB_01537at 1601.805 kb on - strand, within OHPLBJKB_01537at 1601.805 kb on - strand, within OHPLBJKB_01537at 1601.805 kb on - strand, within OHPLBJKB_01537at 1601.805 kb on - strand, within OHPLBJKB_01537at 1601.967 kb on - strand, within OHPLBJKB_01537at 1601.968 kb on + strand, within OHPLBJKB_01537at 1601.968 kb on + strand, within OHPLBJKB_01537at 1601.969 kb on - strand, within OHPLBJKB_01537at 1601.969 kb on - strand, within OHPLBJKB_01537at 1601.970 kb on + strand, within OHPLBJKB_01537at 1601.970 kb on + strand, within OHPLBJKB_01537at 1601.970 kb on + strand, within OHPLBJKB_01537at 1601.970 kb on + strand, within OHPLBJKB_01537at 1601.971 kb on - strand, within OHPLBJKB_01537at 1601.971 kb on - strand, within OHPLBJKB_01537at 1601.971 kb on - strand, within OHPLBJKB_01537at 1601.971 kb on - strand, within OHPLBJKB_01537at 1601.971 kb on - strand, within OHPLBJKB_01537at 1602.126 kb on - strandat 1602.166 kb on - strandat 1602.246 kb on - strandat 1602.335 kb on + strandat 1602.336 kb on - strandat 1602.369 kb on + strandat 1602.443 kb on + strandat 1602.443 kb on + strandat 1602.446 kb on - strandat 1602.446 kb on - strandat 1602.490 kb on - strand, within OHPLBJKB_01538at 1602.490 kb on - strand, within OHPLBJKB_01538at 1602.494 kb on - strand, within OHPLBJKB_01538at 1602.494 kb on - strand, within OHPLBJKB_01538at 1602.719 kb on + strand, within OHPLBJKB_01538at 1602.719 kb on + strand, within OHPLBJKB_01538at 1602.728 kb on + strand, within OHPLBJKB_01538at 1602.729 kb on - strand, within OHPLBJKB_01538at 1602.731 kb on - strand, within OHPLBJKB_01538at 1602.731 kb on - strand, within OHPLBJKB_01538at 1602.754 kb on + strand, within OHPLBJKB_01538at 1602.755 kb on - strand, within OHPLBJKB_01538at 1602.956 kb on - strandat 1602.956 kb on - strandat 1602.969 kb on - strandat 1603.032 kb on - strandat 1603.044 kb on + strandat 1603.074 kb on - strandat 1603.105 kb on + strandat 1603.105 kb on + strandat 1603.139 kb on + strandat 1603.152 kb on + strandat 1603.152 kb on + strandat 1603.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI10
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1,599,800 + OHPLBJKB_01536 0.17 +0.7
1,599,908 - OHPLBJKB_01536 0.28 +0.6
1,599,960 + OHPLBJKB_01536 0.33 +0.4
1,599,961 - OHPLBJKB_01536 0.33 +0.3
1,600,086 + OHPLBJKB_01536 0.46 +0.8
1,600,087 - OHPLBJKB_01536 0.46 -0.3
1,600,164 - OHPLBJKB_01536 0.54 -0.0
1,600,164 - OHPLBJKB_01536 0.54 +1.3
1,600,164 - OHPLBJKB_01536 0.54 +0.2
1,600,278 + OHPLBJKB_01536 0.65 -0.5
1,600,279 - OHPLBJKB_01536 0.65 -0.6
1,600,279 - OHPLBJKB_01536 0.65 -0.2
1,600,383 + OHPLBJKB_01536 0.76 +0.2
1,600,384 - OHPLBJKB_01536 0.76 +0.0
1,600,388 + OHPLBJKB_01536 0.76 +0.0
1,600,388 + OHPLBJKB_01536 0.76 +0.5
1,600,388 + OHPLBJKB_01536 0.76 +0.1
1,600,398 + OHPLBJKB_01536 0.78 +0.4
1,600,411 - OHPLBJKB_01536 0.79 +0.5
1,600,411 - OHPLBJKB_01536 0.79 -0.1
1,600,634 - +1.5
1,600,647 - -0.2
1,600,755 + -0.1
1,600,755 + -0.4
1,600,756 - +0.9
1,600,782 + +0.4
1,600,829 + +0.0
1,601,043 + OHPLBJKB_01537 0.21 +0.3
1,601,044 - OHPLBJKB_01537 0.21 -0.1
1,601,044 - OHPLBJKB_01537 0.21 +0.9
1,601,111 + OHPLBJKB_01537 0.25 +0.4
1,601,111 + OHPLBJKB_01537 0.25 +1.0
1,601,111 + OHPLBJKB_01537 0.25 -0.8
1,601,111 + OHPLBJKB_01537 0.25 +0.9
1,601,112 - OHPLBJKB_01537 0.26 +0.4
1,601,145 + OHPLBJKB_01537 0.28 -0.0
1,601,146 - OHPLBJKB_01537 0.28 -0.9
1,601,146 - OHPLBJKB_01537 0.28 -1.8
1,601,146 - OHPLBJKB_01537 0.28 +0.7
1,601,146 - OHPLBJKB_01537 0.28 -0.8
1,601,146 - OHPLBJKB_01537 0.28 -1.0
1,601,159 - OHPLBJKB_01537 0.29 +0.4
1,601,159 - OHPLBJKB_01537 0.29 +0.4
1,601,214 + OHPLBJKB_01537 0.33 -1.4
1,601,294 - OHPLBJKB_01537 0.38 -0.3
1,601,319 - OHPLBJKB_01537 0.40 -0.7
1,601,370 + OHPLBJKB_01537 0.43 -0.4
1,601,562 + OHPLBJKB_01537 0.56 +0.2
1,601,563 - OHPLBJKB_01537 0.56 +0.9
1,601,748 + OHPLBJKB_01537 0.69 -0.4
1,601,749 - OHPLBJKB_01537 0.69 -0.4
1,601,749 - OHPLBJKB_01537 0.69 -0.3
1,601,759 + OHPLBJKB_01537 0.70 +2.5
1,601,772 - OHPLBJKB_01537 0.71 +1.1
1,601,804 + OHPLBJKB_01537 0.73 +1.1
1,601,804 + OHPLBJKB_01537 0.73 +0.3
1,601,804 + OHPLBJKB_01537 0.73 +0.8
1,601,804 + OHPLBJKB_01537 0.73 -0.1
1,601,805 - OHPLBJKB_01537 0.73 +0.1
1,601,805 - OHPLBJKB_01537 0.73 +0.1
1,601,805 - OHPLBJKB_01537 0.73 +1.0
1,601,805 - OHPLBJKB_01537 0.73 +0.9
1,601,805 - OHPLBJKB_01537 0.73 +0.3
1,601,967 - OHPLBJKB_01537 0.84 +0.4
1,601,968 + OHPLBJKB_01537 0.84 -1.1
1,601,968 + OHPLBJKB_01537 0.84 -0.2
1,601,969 - OHPLBJKB_01537 0.84 +1.5
1,601,969 - OHPLBJKB_01537 0.84 -0.2
1,601,970 + OHPLBJKB_01537 0.84 +0.2
1,601,970 + OHPLBJKB_01537 0.84 -0.3
1,601,970 + OHPLBJKB_01537 0.84 +0.6
1,601,970 + OHPLBJKB_01537 0.84 +0.3
1,601,971 - OHPLBJKB_01537 0.84 -1.1
1,601,971 - OHPLBJKB_01537 0.84 -0.3
1,601,971 - OHPLBJKB_01537 0.84 -0.7
1,601,971 - OHPLBJKB_01537 0.84 +0.3
1,601,971 - OHPLBJKB_01537 0.84 -0.9
1,602,126 - +0.8
1,602,166 - -0.0
1,602,246 - -0.5
1,602,335 + -0.2
1,602,336 - +0.5
1,602,369 + +0.5
1,602,443 + -1.4
1,602,443 + -0.3
1,602,446 - -0.1
1,602,446 - +0.6
1,602,490 - OHPLBJKB_01538 0.11 -0.5
1,602,490 - OHPLBJKB_01538 0.11 +0.3
1,602,494 - OHPLBJKB_01538 0.12 -0.9
1,602,494 - OHPLBJKB_01538 0.12 -0.4
1,602,719 + OHPLBJKB_01538 0.51 -0.5
1,602,719 + OHPLBJKB_01538 0.51 +0.0
1,602,728 + OHPLBJKB_01538 0.53 -0.6
1,602,729 - OHPLBJKB_01538 0.53 +1.3
1,602,731 - OHPLBJKB_01538 0.53 -0.0
1,602,731 - OHPLBJKB_01538 0.53 +0.9
1,602,754 + OHPLBJKB_01538 0.57 -0.4
1,602,755 - OHPLBJKB_01538 0.57 -0.2
1,602,956 - -0.4
1,602,956 - -0.5
1,602,969 - -0.4
1,603,032 - -1.7
1,603,044 + -0.9
1,603,074 - -0.2
1,603,105 + -0.0
1,603,105 + -0.5
1,603,139 + +0.7
1,603,152 + -0.8
1,603,152 + -0.2
1,603,153 - -0.8

Or see this region's nucleotide sequence