Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05609

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05607 and BACOVA_05608 are separated by 30 nucleotidesBACOVA_05608 and BACOVA_05609 are separated by 84 nucleotidesBACOVA_05609 and BACOVA_05610 are separated by 13 nucleotides BACOVA_05607: BACOVA_05607 - hypothetical protein, at 1,124,039 to 1,126,405 _05607 BACOVA_05608: BACOVA_05608 - hypothetical protein, at 1,126,436 to 1,126,540 _05608 BACOVA_05609: BACOVA_05609 - hypothetical protein, at 1,126,625 to 1,127,995 _05609 BACOVA_05610: BACOVA_05610 - phosphate-selective porin O and P, at 1,128,009 to 1,129,154 _05610 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1125.651 kb on - strand, within BACOVA_05607at 1125.652 kb on + strand, within BACOVA_05607at 1125.653 kb on - strand, within BACOVA_05607at 1125.685 kb on + strand, within BACOVA_05607at 1125.689 kb on - strand, within BACOVA_05607at 1125.708 kb on + strand, within BACOVA_05607at 1125.709 kb on - strand, within BACOVA_05607at 1125.770 kb on - strand, within BACOVA_05607at 1125.796 kb on + strand, within BACOVA_05607at 1125.797 kb on - strand, within BACOVA_05607at 1125.903 kb on - strand, within BACOVA_05607at 1125.932 kb on - strand, within BACOVA_05607at 1125.993 kb on + strand, within BACOVA_05607at 1125.993 kb on + strand, within BACOVA_05607at 1125.997 kb on + strand, within BACOVA_05607at 1125.998 kb on - strand, within BACOVA_05607at 1126.004 kb on + strand, within BACOVA_05607at 1126.042 kb on + strand, within BACOVA_05607at 1126.043 kb on - strand, within BACOVA_05607at 1126.043 kb on - strand, within BACOVA_05607at 1126.104 kb on - strand, within BACOVA_05607at 1126.105 kb on + strand, within BACOVA_05607at 1126.155 kb on + strand, within BACOVA_05607at 1126.156 kb on - strand, within BACOVA_05607at 1126.156 kb on - strand, within BACOVA_05607at 1126.248 kb on + strandat 1126.280 kb on + strandat 1126.280 kb on + strandat 1126.316 kb on + strandat 1126.350 kb on + strandat 1126.362 kb on + strandat 1126.363 kb on - strandat 1126.363 kb on - strandat 1126.394 kb on - strandat 1126.494 kb on + strand, within BACOVA_05608at 1126.495 kb on - strand, within BACOVA_05608at 1126.505 kb on - strand, within BACOVA_05608at 1126.511 kb on + strand, within BACOVA_05608at 1126.519 kb on + strand, within BACOVA_05608at 1126.519 kb on + strand, within BACOVA_05608at 1126.520 kb on - strand, within BACOVA_05608at 1126.584 kb on - strandat 1126.584 kb on - strandat 1126.584 kb on - strandat 1126.656 kb on + strandat 1126.695 kb on + strandat 1126.739 kb on - strandat 1126.800 kb on - strand, within BACOVA_05609at 1126.801 kb on + strand, within BACOVA_05609at 1126.802 kb on - strand, within BACOVA_05609at 1126.814 kb on - strand, within BACOVA_05609at 1126.816 kb on + strand, within BACOVA_05609at 1126.816 kb on + strand, within BACOVA_05609at 1126.855 kb on - strand, within BACOVA_05609at 1126.904 kb on - strand, within BACOVA_05609at 1126.967 kb on + strand, within BACOVA_05609at 1126.969 kb on + strand, within BACOVA_05609at 1126.970 kb on - strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1127.023 kb on + strand, within BACOVA_05609at 1127.093 kb on - strand, within BACOVA_05609at 1127.137 kb on + strand, within BACOVA_05609at 1127.137 kb on + strand, within BACOVA_05609at 1127.215 kb on + strand, within BACOVA_05609at 1127.215 kb on + strand, within BACOVA_05609at 1127.216 kb on - strand, within BACOVA_05609at 1127.216 kb on - strand, within BACOVA_05609at 1127.251 kb on + strand, within BACOVA_05609at 1127.251 kb on + strand, within BACOVA_05609at 1127.253 kb on + strand, within BACOVA_05609at 1127.254 kb on - strand, within BACOVA_05609at 1127.317 kb on + strand, within BACOVA_05609at 1127.318 kb on - strand, within BACOVA_05609at 1127.331 kb on + strand, within BACOVA_05609at 1127.335 kb on - strand, within BACOVA_05609at 1127.344 kb on - strand, within BACOVA_05609at 1127.348 kb on - strand, within BACOVA_05609at 1127.352 kb on + strand, within BACOVA_05609at 1127.352 kb on + strand, within BACOVA_05609at 1127.353 kb on - strand, within BACOVA_05609at 1127.369 kb on - strand, within BACOVA_05609at 1127.401 kb on + strand, within BACOVA_05609at 1127.407 kb on + strand, within BACOVA_05609at 1127.447 kb on - strand, within BACOVA_05609at 1127.460 kb on + strand, within BACOVA_05609at 1127.504 kb on - strand, within BACOVA_05609at 1127.508 kb on + strand, within BACOVA_05609at 1127.566 kb on + strand, within BACOVA_05609at 1127.639 kb on - strand, within BACOVA_05609at 1127.645 kb on + strand, within BACOVA_05609at 1127.698 kb on - strand, within BACOVA_05609at 1127.747 kb on - strand, within BACOVA_05609at 1127.758 kb on - strand, within BACOVA_05609at 1127.758 kb on - strand, within BACOVA_05609at 1127.814 kb on - strand, within BACOVA_05609at 1127.819 kb on - strand, within BACOVA_05609at 1127.819 kb on - strand, within BACOVA_05609at 1127.820 kb on + strand, within BACOVA_05609at 1127.821 kb on - strand, within BACOVA_05609at 1127.821 kb on - strand, within BACOVA_05609at 1127.835 kb on + strand, within BACOVA_05609at 1127.835 kb on + strand, within BACOVA_05609at 1127.835 kb on + strand, within BACOVA_05609at 1127.849 kb on - strand, within BACOVA_05609at 1127.876 kb on + strandat 1127.877 kb on - strandat 1127.893 kb on + strandat 1128.017 kb on - strandat 1128.020 kb on - strandat 1128.027 kb on + strandat 1128.028 kb on - strandat 1128.050 kb on - strandat 1128.056 kb on - strandat 1128.103 kb on + strandat 1128.111 kb on - strandat 1128.111 kb on - strandat 1128.127 kb on + strand, within BACOVA_05610at 1128.127 kb on + strand, within BACOVA_05610at 1128.128 kb on - strand, within BACOVA_05610at 1128.128 kb on - strand, within BACOVA_05610at 1128.209 kb on - strand, within BACOVA_05610at 1128.215 kb on + strand, within BACOVA_05610at 1128.219 kb on + strand, within BACOVA_05610at 1128.220 kb on - strand, within BACOVA_05610at 1128.220 kb on - strand, within BACOVA_05610at 1128.268 kb on + strand, within BACOVA_05610at 1128.269 kb on - strand, within BACOVA_05610at 1128.308 kb on + strand, within BACOVA_05610at 1128.309 kb on - strand, within BACOVA_05610at 1128.309 kb on - strand, within BACOVA_05610at 1128.362 kb on + strand, within BACOVA_05610at 1128.428 kb on + strand, within BACOVA_05610at 1128.429 kb on - strand, within BACOVA_05610at 1128.429 kb on - strand, within BACOVA_05610at 1128.436 kb on + strand, within BACOVA_05610at 1128.442 kb on - strand, within BACOVA_05610at 1128.448 kb on - strand, within BACOVA_05610at 1128.460 kb on - strand, within BACOVA_05610at 1128.553 kb on - strand, within BACOVA_05610at 1128.587 kb on + strand, within BACOVA_05610at 1128.589 kb on + strand, within BACOVA_05610at 1128.595 kb on + strand, within BACOVA_05610at 1128.612 kb on - strand, within BACOVA_05610at 1128.651 kb on - strand, within BACOVA_05610at 1128.661 kb on - strand, within BACOVA_05610at 1128.696 kb on - strand, within BACOVA_05610at 1128.696 kb on - strand, within BACOVA_05610at 1128.715 kb on + strand, within BACOVA_05610at 1128.771 kb on - strand, within BACOVA_05610at 1128.792 kb on + strand, within BACOVA_05610at 1128.808 kb on + strand, within BACOVA_05610at 1128.834 kb on + strand, within BACOVA_05610at 1128.835 kb on - strand, within BACOVA_05610at 1128.837 kb on - strand, within BACOVA_05610at 1128.852 kb on + strand, within BACOVA_05610at 1128.853 kb on - strand, within BACOVA_05610at 1128.853 kb on - strand, within BACOVA_05610at 1128.853 kb on - strand, within BACOVA_05610at 1128.853 kb on - strand, within BACOVA_05610at 1128.872 kb on - strand, within BACOVA_05610at 1128.888 kb on + strand, within BACOVA_05610at 1128.888 kb on + strand, within BACOVA_05610at 1128.889 kb on - strand, within BACOVA_05610at 1128.889 kb on - strand, within BACOVA_05610at 1128.892 kb on + strand, within BACOVA_05610at 1128.908 kb on - strand, within BACOVA_05610at 1128.946 kb on + strand, within BACOVA_05610at 1128.946 kb on + strand, within BACOVA_05610at 1128.947 kb on - strand, within BACOVA_05610at 1128.989 kb on - strand, within BACOVA_05610

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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1,125,651 - BACOVA_05607 0.68 -0.8
1,125,652 + BACOVA_05607 0.68 +0.4
1,125,653 - BACOVA_05607 0.68 +1.8
1,125,685 + BACOVA_05607 0.70 +0.2
1,125,689 - BACOVA_05607 0.70 +0.5
1,125,708 + BACOVA_05607 0.71 +0.6
1,125,709 - BACOVA_05607 0.71 -0.4
1,125,770 - BACOVA_05607 0.73 -0.4
1,125,796 + BACOVA_05607 0.74 +0.2
1,125,797 - BACOVA_05607 0.74 -0.8
1,125,903 - BACOVA_05607 0.79 +0.4
1,125,932 - BACOVA_05607 0.80 +0.3
1,125,993 + BACOVA_05607 0.83 -0.0
1,125,993 + BACOVA_05607 0.83 -2.6
1,125,997 + BACOVA_05607 0.83 -0.4
1,125,998 - BACOVA_05607 0.83 +0.1
1,126,004 + BACOVA_05607 0.83 -0.2
1,126,042 + BACOVA_05607 0.85 -0.4
1,126,043 - BACOVA_05607 0.85 -1.2
1,126,043 - BACOVA_05607 0.85 -0.2
1,126,104 - BACOVA_05607 0.87 -2.3
1,126,105 + BACOVA_05607 0.87 -0.7
1,126,155 + BACOVA_05607 0.89 -0.0
1,126,156 - BACOVA_05607 0.89 -0.2
1,126,156 - BACOVA_05607 0.89 -0.6
1,126,248 + +0.5
1,126,280 + -0.2
1,126,280 + -2.2
1,126,316 + -0.5
1,126,350 + +0.5
1,126,362 + -0.5
1,126,363 - -0.5
1,126,363 - -1.0
1,126,394 - +2.8
1,126,494 + BACOVA_05608 0.55 -2.2
1,126,495 - BACOVA_05608 0.56 -0.5
1,126,505 - BACOVA_05608 0.66 +0.8
1,126,511 + BACOVA_05608 0.71 +0.3
1,126,519 + BACOVA_05608 0.79 +0.7
1,126,519 + BACOVA_05608 0.79 +0.0
1,126,520 - BACOVA_05608 0.80 +0.2
1,126,584 - +0.2
1,126,584 - -1.4
1,126,584 - +2.7
1,126,656 + -0.2
1,126,695 + +1.8
1,126,739 - +0.5
1,126,800 - BACOVA_05609 0.13 +0.2
1,126,801 + BACOVA_05609 0.13 +0.4
1,126,802 - BACOVA_05609 0.13 +0.0
1,126,814 - BACOVA_05609 0.14 +0.4
1,126,816 + BACOVA_05609 0.14 +0.6
1,126,816 + BACOVA_05609 0.14 -0.1
1,126,855 - BACOVA_05609 0.17 +0.3
1,126,904 - BACOVA_05609 0.20 -0.0
1,126,967 + BACOVA_05609 0.25 -0.4
1,126,969 + BACOVA_05609 0.25 -0.0
1,126,970 - BACOVA_05609 0.25 -0.2
1,126,972 + BACOVA_05609 0.25 -0.5
1,126,972 + BACOVA_05609 0.25 +0.2
1,126,972 + BACOVA_05609 0.25 +0.8
1,127,023 + BACOVA_05609 0.29 -1.3
1,127,093 - BACOVA_05609 0.34 -1.3
1,127,137 + BACOVA_05609 0.37 -0.2
1,127,137 + BACOVA_05609 0.37 -1.6
1,127,215 + BACOVA_05609 0.43 -2.9
1,127,215 + BACOVA_05609 0.43 -0.8
1,127,216 - BACOVA_05609 0.43 -1.0
1,127,216 - BACOVA_05609 0.43 -0.1
1,127,251 + BACOVA_05609 0.46 -0.6
1,127,251 + BACOVA_05609 0.46 +0.4
1,127,253 + BACOVA_05609 0.46 +0.3
1,127,254 - BACOVA_05609 0.46 +0.4
1,127,317 + BACOVA_05609 0.50 -1.2
1,127,318 - BACOVA_05609 0.51 -0.6
1,127,331 + BACOVA_05609 0.51 +0.5
1,127,335 - BACOVA_05609 0.52 -0.4
1,127,344 - BACOVA_05609 0.52 -0.2
1,127,348 - BACOVA_05609 0.53 -0.4
1,127,352 + BACOVA_05609 0.53 -0.6
1,127,352 + BACOVA_05609 0.53 -0.5
1,127,353 - BACOVA_05609 0.53 -0.1
1,127,369 - BACOVA_05609 0.54 +0.2
1,127,401 + BACOVA_05609 0.57 -0.3
1,127,407 + BACOVA_05609 0.57 -0.4
1,127,447 - BACOVA_05609 0.60 +0.3
1,127,460 + BACOVA_05609 0.61 -0.5
1,127,504 - BACOVA_05609 0.64 +0.2
1,127,508 + BACOVA_05609 0.64 -0.9
1,127,566 + BACOVA_05609 0.69 -1.1
1,127,639 - BACOVA_05609 0.74 +1.6
1,127,645 + BACOVA_05609 0.74 -0.5
1,127,698 - BACOVA_05609 0.78 +0.4
1,127,747 - BACOVA_05609 0.82 -1.1
1,127,758 - BACOVA_05609 0.83 -0.9
1,127,758 - BACOVA_05609 0.83 +1.1
1,127,814 - BACOVA_05609 0.87 -0.3
1,127,819 - BACOVA_05609 0.87 -1.6
1,127,819 - BACOVA_05609 0.87 -0.9
1,127,820 + BACOVA_05609 0.87 -0.6
1,127,821 - BACOVA_05609 0.87 +0.0
1,127,821 - BACOVA_05609 0.87 +0.4
1,127,835 + BACOVA_05609 0.88 -0.1
1,127,835 + BACOVA_05609 0.88 +0.3
1,127,835 + BACOVA_05609 0.88 +0.2
1,127,849 - BACOVA_05609 0.89 -2.7
1,127,876 + -0.5
1,127,877 - -0.6
1,127,893 + +0.3
1,128,017 - -1.8
1,128,020 - +0.5
1,128,027 + +0.1
1,128,028 - -0.7
1,128,050 - +1.9
1,128,056 - -2.3
1,128,103 + +0.3
1,128,111 - +0.2
1,128,111 - +1.2
1,128,127 + BACOVA_05610 0.10 -0.0
1,128,127 + BACOVA_05610 0.10 +0.7
1,128,128 - BACOVA_05610 0.10 -0.2
1,128,128 - BACOVA_05610 0.10 -0.4
1,128,209 - BACOVA_05610 0.17 -0.3
1,128,215 + BACOVA_05610 0.18 -0.6
1,128,219 + BACOVA_05610 0.18 +0.9
1,128,220 - BACOVA_05610 0.18 +0.9
1,128,220 - BACOVA_05610 0.18 +0.2
1,128,268 + BACOVA_05610 0.23 -0.2
1,128,269 - BACOVA_05610 0.23 -0.0
1,128,308 + BACOVA_05610 0.26 +0.3
1,128,309 - BACOVA_05610 0.26 -0.4
1,128,309 - BACOVA_05610 0.26 +0.5
1,128,362 + BACOVA_05610 0.31 -1.8
1,128,428 + BACOVA_05610 0.37 -2.5
1,128,429 - BACOVA_05610 0.37 +0.8
1,128,429 - BACOVA_05610 0.37 -0.2
1,128,436 + BACOVA_05610 0.37 -0.1
1,128,442 - BACOVA_05610 0.38 -0.6
1,128,448 - BACOVA_05610 0.38 -0.6
1,128,460 - BACOVA_05610 0.39 -0.7
1,128,553 - BACOVA_05610 0.47 +0.1
1,128,587 + BACOVA_05610 0.50 -1.0
1,128,589 + BACOVA_05610 0.51 +0.0
1,128,595 + BACOVA_05610 0.51 +0.4
1,128,612 - BACOVA_05610 0.53 -0.8
1,128,651 - BACOVA_05610 0.56 +0.9
1,128,661 - BACOVA_05610 0.57 +0.8
1,128,696 - BACOVA_05610 0.60 +0.7
1,128,696 - BACOVA_05610 0.60 +0.9
1,128,715 + BACOVA_05610 0.62 -1.8
1,128,771 - BACOVA_05610 0.66 +1.0
1,128,792 + BACOVA_05610 0.68 +1.0
1,128,808 + BACOVA_05610 0.70 -0.4
1,128,834 + BACOVA_05610 0.72 +0.7
1,128,835 - BACOVA_05610 0.72 -0.6
1,128,837 - BACOVA_05610 0.72 +0.3
1,128,852 + BACOVA_05610 0.74 -0.0
1,128,853 - BACOVA_05610 0.74 +0.9
1,128,853 - BACOVA_05610 0.74 -1.4
1,128,853 - BACOVA_05610 0.74 +0.1
1,128,853 - BACOVA_05610 0.74 +1.1
1,128,872 - BACOVA_05610 0.75 +0.2
1,128,888 + BACOVA_05610 0.77 +0.5
1,128,888 + BACOVA_05610 0.77 -0.7
1,128,889 - BACOVA_05610 0.77 -0.6
1,128,889 - BACOVA_05610 0.77 -0.8
1,128,892 + BACOVA_05610 0.77 +1.0
1,128,908 - BACOVA_05610 0.78 -0.2
1,128,946 + BACOVA_05610 0.82 -1.9
1,128,946 + BACOVA_05610 0.82 -2.3
1,128,947 - BACOVA_05610 0.82 -0.6
1,128,989 - BACOVA_05610 0.86 -0.6

Or see this region's nucleotide sequence