Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05590 and BACOVA_05591 are separated by 57 nucleotides BACOVA_05591 and BACOVA_05592 overlap by 129 nucleotides BACOVA_05592 and BACOVA_05593 are separated by 193 nucleotides BACOVA_05593 and BACOVA_05594 overlap by 4 nucleotides BACOVA_05594 and BACOVA_05595 overlap by 14 nucleotides
BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855
_05590
BACOVA_05591: BACOVA_05591 - hypothetical protein, at 1,108,913 to 1,109,071
_05591
BACOVA_05592: BACOVA_05592 - hypothetical protein, at 1,108,943 to 1,109,173
_05592
BACOVA_05593: BACOVA_05593 - putative DNA-binding protein, at 1,109,367 to 1,109,870
_05593
BACOVA_05594: BACOVA_05594 - hypothetical protein, at 1,109,867 to 1,110,058
_05594
BACOVA_05595: BACOVA_05595 - N-acetylmuramoyl-L-alanine amidase, at 1,110,045 to 1,110,488
_05595
Position (kb)
1108
1109
1110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1108.016 kb on - strand, within BACOVA_05590 at 1108.057 kb on - strand, within BACOVA_05590 at 1108.118 kb on - strand, within BACOVA_05590 at 1108.167 kb on + strand, within BACOVA_05590 at 1108.168 kb on - strand, within BACOVA_05590 at 1108.312 kb on - strand, within BACOVA_05590 at 1108.349 kb on - strand, within BACOVA_05590 at 1108.481 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.488 kb on - strand, within BACOVA_05590 at 1108.692 kb on - strand at 1108.945 kb on - strand at 1108.960 kb on - strand at 1108.964 kb on + strand at 1108.965 kb on - strand at 1109.110 kb on - strand, within BACOVA_05592 at 1109.226 kb on + strand at 1109.258 kb on - strand at 1109.363 kb on + strand at 1109.381 kb on - strand at 1109.386 kb on - strand at 1109.393 kb on - strand at 1109.439 kb on + strand, within BACOVA_05593 at 1109.553 kb on + strand, within BACOVA_05593 at 1109.735 kb on + strand, within BACOVA_05593 at 1109.740 kb on - strand, within BACOVA_05593 at 1109.750 kb on - strand, within BACOVA_05593 at 1109.871 kb on + strand at 1109.883 kb on + strand at 1109.884 kb on - strand at 1109.909 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.996 kb on - strand, within BACOVA_05594
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 1,108,016 - BACOVA_05590 0.60 -0.6 1,108,057 - BACOVA_05590 0.62 -2.1 1,108,118 - BACOVA_05590 0.65 -0.0 1,108,167 + BACOVA_05590 0.67 -2.5 1,108,168 - BACOVA_05590 0.68 +0.9 1,108,312 - BACOVA_05590 0.74 -1.1 1,108,349 - BACOVA_05590 0.76 -1.6 1,108,481 + BACOVA_05590 0.82 +0.0 1,108,487 + BACOVA_05590 0.83 +0.9 1,108,487 + BACOVA_05590 0.83 +0.3 1,108,488 - BACOVA_05590 0.83 +0.1 1,108,692 - +0.2 1,108,945 - +0.1 1,108,960 - +0.7 1,108,964 + -0.8 1,108,965 - -0.1 1,109,110 - BACOVA_05592 0.72 -0.7 1,109,226 + -1.3 1,109,258 - +0.0 1,109,363 + +1.2 1,109,381 - +0.2 1,109,386 - -1.9 1,109,393 - -0.6 1,109,439 + BACOVA_05593 0.14 -1.4 1,109,553 + BACOVA_05593 0.37 +0.6 1,109,735 + BACOVA_05593 0.73 -0.1 1,109,740 - BACOVA_05593 0.74 -0.2 1,109,750 - BACOVA_05593 0.76 -1.4 1,109,871 + -1.1 1,109,883 + +1.8 1,109,884 - -0.1 1,109,909 - BACOVA_05594 0.22 -0.3 1,109,923 - BACOVA_05594 0.29 -0.2 1,109,923 - BACOVA_05594 0.29 -2.2 1,109,923 - BACOVA_05594 0.29 +0.4 1,109,996 - BACOVA_05594 0.67 -1.5
Or see this region's nucleotide sequence