Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05378 and BACOVA_05379 are separated by 15 nucleotides BACOVA_05379 and BACOVA_05380 are separated by 25 nucleotides BACOVA_05380 and BACOVA_05381 are separated by 49 nucleotides BACOVA_05381 and BACOVA_05382 are separated by 134 nucleotides
BACOVA_05378: BACOVA_05378 - aminomethyltransferase, at 862,678 to 863,763
_05378
BACOVA_05379: BACOVA_05379 - hypothetical protein, at 863,779 to 863,889
_05379
BACOVA_05380: BACOVA_05380 - TrkA C-terminal domain protein, at 863,915 to 866,188
_05380
BACOVA_05381: BACOVA_05381 - histidine triad domain protein, at 866,238 to 866,663
_05381
BACOVA_05382: BACOVA_05382 - S4 domain protein, at 866,798 to 867,214
_05382
Position (kb) 863
864
865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 862.925 kb on - strand, within BACOVA_05378 at 862.926 kb on + strand, within BACOVA_05378 at 862.927 kb on - strand, within BACOVA_05378 at 862.927 kb on - strand, within BACOVA_05378 at 862.958 kb on + strand, within BACOVA_05378 at 862.959 kb on - strand, within BACOVA_05378 at 862.975 kb on + strand, within BACOVA_05378 at 862.997 kb on - strand, within BACOVA_05378 at 863.109 kb on + strand, within BACOVA_05378 at 863.109 kb on + strand, within BACOVA_05378 at 863.110 kb on - strand, within BACOVA_05378 at 863.110 kb on - strand, within BACOVA_05378 at 863.110 kb on - strand, within BACOVA_05378 at 863.111 kb on + strand, within BACOVA_05378 at 863.112 kb on - strand, within BACOVA_05378 at 863.166 kb on + strand, within BACOVA_05378 at 863.180 kb on - strand, within BACOVA_05378 at 863.181 kb on + strand, within BACOVA_05378 at 863.181 kb on + strand, within BACOVA_05378 at 863.181 kb on + strand, within BACOVA_05378 at 863.181 kb on + strand, within BACOVA_05378 at 863.188 kb on - strand, within BACOVA_05378 at 863.188 kb on - strand, within BACOVA_05378 at 863.242 kb on - strand, within BACOVA_05378 at 863.266 kb on + strand, within BACOVA_05378 at 863.266 kb on + strand, within BACOVA_05378 at 863.267 kb on - strand, within BACOVA_05378 at 863.292 kb on + strand, within BACOVA_05378 at 863.326 kb on + strand, within BACOVA_05378 at 863.334 kb on + strand, within BACOVA_05378 at 863.340 kb on + strand, within BACOVA_05378 at 863.361 kb on + strand, within BACOVA_05378 at 863.362 kb on - strand, within BACOVA_05378 at 863.449 kb on + strand, within BACOVA_05378 at 863.452 kb on - strand, within BACOVA_05378 at 863.623 kb on - strand, within BACOVA_05378 at 863.677 kb on + strand at 863.679 kb on + strand at 863.680 kb on - strand at 863.682 kb on + strand at 863.710 kb on - strand at 863.738 kb on + strand at 863.785 kb on - strand at 863.785 kb on - strand at 863.786 kb on + strand at 863.839 kb on - strand, within BACOVA_05379 at 863.857 kb on - strand, within BACOVA_05379 at 863.926 kb on - strand at 863.929 kb on + strand at 863.938 kb on - strand at 863.955 kb on + strand at 863.955 kb on + strand at 863.990 kb on - strand at 864.024 kb on + strand at 864.024 kb on + strand at 864.024 kb on + strand at 864.024 kb on + strand at 864.025 kb on - strand at 864.025 kb on - strand at 864.053 kb on - strand at 864.060 kb on - strand at 864.062 kb on - strand at 864.062 kb on - strand at 864.091 kb on + strand at 864.106 kb on + strand at 864.199 kb on + strand, within BACOVA_05380 at 864.287 kb on - strand, within BACOVA_05380 at 864.304 kb on + strand, within BACOVA_05380 at 864.304 kb on + strand, within BACOVA_05380 at 864.304 kb on + strand, within BACOVA_05380 at 864.313 kb on + strand, within BACOVA_05380 at 864.313 kb on + strand, within BACOVA_05380 at 864.314 kb on - strand, within BACOVA_05380 at 864.411 kb on + strand, within BACOVA_05380 at 864.411 kb on + strand, within BACOVA_05380 at 864.524 kb on + strand, within BACOVA_05380 at 864.524 kb on + strand, within BACOVA_05380 at 864.524 kb on + strand, within BACOVA_05380 at 864.584 kb on - strand, within BACOVA_05380 at 864.616 kb on - strand, within BACOVA_05380 at 864.632 kb on - strand, within BACOVA_05380 at 864.661 kb on + strand, within BACOVA_05380 at 864.662 kb on - strand, within BACOVA_05380 at 864.673 kb on + strand, within BACOVA_05380 at 864.674 kb on - strand, within BACOVA_05380 at 864.674 kb on - strand, within BACOVA_05380 at 864.792 kb on + strand, within BACOVA_05380 at 864.798 kb on - strand, within BACOVA_05380 at 864.798 kb on - strand, within BACOVA_05380 at 864.808 kb on + strand, within BACOVA_05380 at 864.809 kb on - strand, within BACOVA_05380 at 864.811 kb on + strand, within BACOVA_05380 at 864.813 kb on + strand, within BACOVA_05380 at 864.817 kb on + strand, within BACOVA_05380 at 864.818 kb on - strand, within BACOVA_05380 at 864.821 kb on - strand, within BACOVA_05380 at 864.832 kb on + strand, within BACOVA_05380 at 864.869 kb on - strand, within BACOVA_05380 at 864.976 kb on - strand, within BACOVA_05380 at 865.021 kb on + strand, within BACOVA_05380 at 865.022 kb on - strand, within BACOVA_05380 at 865.025 kb on - strand, within BACOVA_05380 at 865.040 kb on + strand, within BACOVA_05380 at 865.040 kb on + strand, within BACOVA_05380 at 865.041 kb on - strand, within BACOVA_05380 at 865.042 kb on + strand, within BACOVA_05380 at 865.043 kb on - strand, within BACOVA_05380 at 865.173 kb on + strand, within BACOVA_05380 at 865.188 kb on + strand, within BACOVA_05380 at 865.189 kb on - strand, within BACOVA_05380 at 865.192 kb on + strand, within BACOVA_05380 at 865.192 kb on + strand, within BACOVA_05380 at 865.193 kb on - strand, within BACOVA_05380 at 865.193 kb on - strand, within BACOVA_05380 at 865.194 kb on + strand, within BACOVA_05380 at 865.194 kb on + strand, within BACOVA_05380 at 865.228 kb on + strand, within BACOVA_05380 at 865.308 kb on + strand, within BACOVA_05380 at 865.309 kb on - strand, within BACOVA_05380 at 865.312 kb on + strand, within BACOVA_05380 at 865.313 kb on - strand, within BACOVA_05380 at 865.325 kb on - strand, within BACOVA_05380 at 865.386 kb on + strand, within BACOVA_05380 at 865.386 kb on + strand, within BACOVA_05380 at 865.442 kb on - strand, within BACOVA_05380 at 865.442 kb on - strand, within BACOVA_05380 at 865.444 kb on + strand, within BACOVA_05380 at 865.444 kb on + strand, within BACOVA_05380 at 865.444 kb on + strand, within BACOVA_05380 at 865.479 kb on - strand, within BACOVA_05380 at 865.485 kb on + strand, within BACOVA_05380 at 865.486 kb on - strand, within BACOVA_05380 at 865.490 kb on - strand, within BACOVA_05380 at 865.511 kb on - strand, within BACOVA_05380 at 865.525 kb on - strand, within BACOVA_05380 at 865.525 kb on - strand, within BACOVA_05380 at 865.525 kb on - strand, within BACOVA_05380 at 865.528 kb on + strand, within BACOVA_05380 at 865.529 kb on - strand, within BACOVA_05380 at 865.534 kb on - strand, within BACOVA_05380 at 865.534 kb on - strand, within BACOVA_05380 at 865.545 kb on + strand, within BACOVA_05380 at 865.545 kb on + strand, within BACOVA_05380 at 865.545 kb on + strand, within BACOVA_05380 at 865.546 kb on - strand, within BACOVA_05380 at 865.620 kb on + strand, within BACOVA_05380 at 865.620 kb on + strand, within BACOVA_05380 at 865.620 kb on + strand, within BACOVA_05380 at 865.620 kb on + strand, within BACOVA_05380 at 865.621 kb on - strand, within BACOVA_05380 at 865.784 kb on - strand, within BACOVA_05380 at 865.808 kb on - strand, within BACOVA_05380 at 865.846 kb on + strand, within BACOVA_05380 at 865.846 kb on + strand, within BACOVA_05380 at 865.846 kb on + strand, within BACOVA_05380 at 865.847 kb on - strand, within BACOVA_05380 at 865.851 kb on + strand, within BACOVA_05380 at 865.878 kb on + strand, within BACOVA_05380 at 865.889 kb on - strand, within BACOVA_05380 at 866.027 kb on + strand at 866.028 kb on - strand at 866.035 kb on + strand at 866.036 kb on - strand at 866.036 kb on - strand at 866.041 kb on - strand at 866.065 kb on + strand at 866.151 kb on + strand at 866.198 kb on - strand at 866.198 kb on - strand at 866.231 kb on + strand at 866.292 kb on - strand, within BACOVA_05381 at 866.381 kb on + strand, within BACOVA_05381 at 866.427 kb on - strand, within BACOVA_05381 at 866.427 kb on - strand, within BACOVA_05381 at 866.436 kb on - strand, within BACOVA_05381 at 866.508 kb on + strand, within BACOVA_05381 at 866.508 kb on + strand, within BACOVA_05381 at 866.517 kb on - strand, within BACOVA_05381 at 866.549 kb on + strand, within BACOVA_05381 at 866.554 kb on - strand, within BACOVA_05381 at 866.579 kb on + strand, within BACOVA_05381 at 866.581 kb on + strand, within BACOVA_05381 at 866.625 kb on + strand at 866.689 kb on + strand at 866.690 kb on - strand at 866.702 kb on - strand at 866.743 kb on - strand at 866.745 kb on - strand at 866.790 kb on + strand at 866.795 kb on - strand at 866.836 kb on + strand at 866.837 kb on - strand at 866.852 kb on - strand, within BACOVA_05382 at 866.912 kb on + strand, within BACOVA_05382 at 867.003 kb on - strand, within BACOVA_05382 at 867.003 kb on - strand, within BACOVA_05382 at 867.024 kb on - strand, within BACOVA_05382 at 867.027 kb on - strand, within BACOVA_05382 at 867.039 kb on + strand, within BACOVA_05382 at 867.039 kb on + strand, within BACOVA_05382 at 867.040 kb on - strand, within BACOVA_05382 at 867.046 kb on + strand, within BACOVA_05382 at 867.047 kb on - strand, within BACOVA_05382 at 867.047 kb on - strand, within BACOVA_05382 at 867.068 kb on - strand, within BACOVA_05382 at 867.088 kb on + strand, within BACOVA_05382 at 867.124 kb on + strand, within BACOVA_05382 at 867.125 kb on - strand, within BACOVA_05382 at 867.158 kb on - strand, within BACOVA_05382
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 862,925 - BACOVA_05378 0.23 -0.3 862,926 + BACOVA_05378 0.23 -0.1 862,927 - BACOVA_05378 0.23 -0.4 862,927 - BACOVA_05378 0.23 -0.4 862,958 + BACOVA_05378 0.26 -0.4 862,959 - BACOVA_05378 0.26 +0.1 862,975 + BACOVA_05378 0.27 +0.9 862,997 - BACOVA_05378 0.29 +0.1 863,109 + BACOVA_05378 0.40 -0.7 863,109 + BACOVA_05378 0.40 -1.6 863,110 - BACOVA_05378 0.40 -0.2 863,110 - BACOVA_05378 0.40 +2.1 863,110 - BACOVA_05378 0.40 -1.4 863,111 + BACOVA_05378 0.40 +0.0 863,112 - BACOVA_05378 0.40 -0.8 863,166 + BACOVA_05378 0.45 -0.4 863,180 - BACOVA_05378 0.46 -0.1 863,181 + BACOVA_05378 0.46 +0.2 863,181 + BACOVA_05378 0.46 +1.3 863,181 + BACOVA_05378 0.46 -0.3 863,181 + BACOVA_05378 0.46 -0.2 863,188 - BACOVA_05378 0.47 -0.8 863,188 - BACOVA_05378 0.47 -0.0 863,242 - BACOVA_05378 0.52 -0.5 863,266 + BACOVA_05378 0.54 -1.6 863,266 + BACOVA_05378 0.54 -0.0 863,267 - BACOVA_05378 0.54 -0.0 863,292 + BACOVA_05378 0.57 +1.4 863,326 + BACOVA_05378 0.60 -0.5 863,334 + BACOVA_05378 0.60 -0.7 863,340 + BACOVA_05378 0.61 +1.0 863,361 + BACOVA_05378 0.63 +0.5 863,362 - BACOVA_05378 0.63 -2.9 863,449 + BACOVA_05378 0.71 -0.5 863,452 - BACOVA_05378 0.71 -2.0 863,623 - BACOVA_05378 0.87 -0.2 863,677 + +0.4 863,679 + +0.8 863,680 - -1.3 863,682 + -0.9 863,710 - -0.3 863,738 + +0.5 863,785 - -0.2 863,785 - -1.1 863,786 + -1.4 863,839 - BACOVA_05379 0.54 -0.3 863,857 - BACOVA_05379 0.70 +0.6 863,926 - +0.3 863,929 + +0.2 863,938 - -0.7 863,955 + -1.0 863,955 + -1.0 863,990 - -2.0 864,024 + -1.5 864,024 + -0.9 864,024 + -1.1 864,024 + -1.3 864,025 - -0.8 864,025 - -1.1 864,053 - -1.4 864,060 - +0.2 864,062 - +0.5 864,062 - -1.8 864,091 + +0.1 864,106 + +0.3 864,199 + BACOVA_05380 0.12 -2.4 864,287 - BACOVA_05380 0.16 -0.4 864,304 + BACOVA_05380 0.17 -1.1 864,304 + BACOVA_05380 0.17 -0.7 864,304 + BACOVA_05380 0.17 -2.0 864,313 + BACOVA_05380 0.18 +0.4 864,313 + BACOVA_05380 0.18 -0.4 864,314 - BACOVA_05380 0.18 -0.7 864,411 + BACOVA_05380 0.22 +0.3 864,411 + BACOVA_05380 0.22 -1.4 864,524 + BACOVA_05380 0.27 +0.0 864,524 + BACOVA_05380 0.27 +1.0 864,524 + BACOVA_05380 0.27 +0.5 864,584 - BACOVA_05380 0.29 -1.7 864,616 - BACOVA_05380 0.31 -0.2 864,632 - BACOVA_05380 0.32 +0.1 864,661 + BACOVA_05380 0.33 +0.5 864,662 - BACOVA_05380 0.33 +1.0 864,673 + BACOVA_05380 0.33 +0.6 864,674 - BACOVA_05380 0.33 -0.5 864,674 - BACOVA_05380 0.33 -0.5 864,792 + BACOVA_05380 0.39 +0.6 864,798 - BACOVA_05380 0.39 +0.7 864,798 - BACOVA_05380 0.39 +0.0 864,808 + BACOVA_05380 0.39 +0.7 864,809 - BACOVA_05380 0.39 -1.8 864,811 + BACOVA_05380 0.39 +0.7 864,813 + BACOVA_05380 0.39 +0.9 864,817 + BACOVA_05380 0.40 -0.1 864,818 - BACOVA_05380 0.40 -0.4 864,821 - BACOVA_05380 0.40 +0.7 864,832 + BACOVA_05380 0.40 +1.6 864,869 - BACOVA_05380 0.42 -0.0 864,976 - BACOVA_05380 0.47 +0.4 865,021 + BACOVA_05380 0.49 -0.8 865,022 - BACOVA_05380 0.49 +0.6 865,025 - BACOVA_05380 0.49 +0.6 865,040 + BACOVA_05380 0.49 +0.2 865,040 + BACOVA_05380 0.49 +0.4 865,041 - BACOVA_05380 0.50 +0.7 865,042 + BACOVA_05380 0.50 -0.2 865,043 - BACOVA_05380 0.50 +1.8 865,173 + BACOVA_05380 0.55 +0.8 865,188 + BACOVA_05380 0.56 -0.5 865,189 - BACOVA_05380 0.56 -1.2 865,192 + BACOVA_05380 0.56 -0.8 865,192 + BACOVA_05380 0.56 -0.9 865,193 - BACOVA_05380 0.56 -1.3 865,193 - BACOVA_05380 0.56 +0.8 865,194 + BACOVA_05380 0.56 +0.0 865,194 + BACOVA_05380 0.56 +0.2 865,228 + BACOVA_05380 0.58 +0.4 865,308 + BACOVA_05380 0.61 +0.2 865,309 - BACOVA_05380 0.61 +0.8 865,312 + BACOVA_05380 0.61 -2.5 865,313 - BACOVA_05380 0.61 -1.4 865,325 - BACOVA_05380 0.62 -0.9 865,386 + BACOVA_05380 0.65 -0.2 865,386 + BACOVA_05380 0.65 -0.7 865,442 - BACOVA_05380 0.67 -1.2 865,442 - BACOVA_05380 0.67 +0.2 865,444 + BACOVA_05380 0.67 -0.3 865,444 + BACOVA_05380 0.67 +0.6 865,444 + BACOVA_05380 0.67 +0.4 865,479 - BACOVA_05380 0.69 +0.4 865,485 + BACOVA_05380 0.69 -0.2 865,486 - BACOVA_05380 0.69 -1.4 865,490 - BACOVA_05380 0.69 -1.8 865,511 - BACOVA_05380 0.70 -0.1 865,525 - BACOVA_05380 0.71 -1.8 865,525 - BACOVA_05380 0.71 -0.9 865,525 - BACOVA_05380 0.71 -1.0 865,528 + BACOVA_05380 0.71 -0.1 865,529 - BACOVA_05380 0.71 -1.2 865,534 - BACOVA_05380 0.71 -1.1 865,534 - BACOVA_05380 0.71 +0.5 865,545 + BACOVA_05380 0.72 +0.5 865,545 + BACOVA_05380 0.72 -0.8 865,545 + BACOVA_05380 0.72 +0.4 865,546 - BACOVA_05380 0.72 +0.8 865,620 + BACOVA_05380 0.75 +1.5 865,620 + BACOVA_05380 0.75 -1.0 865,620 + BACOVA_05380 0.75 +0.6 865,620 + BACOVA_05380 0.75 -0.6 865,621 - BACOVA_05380 0.75 -1.4 865,784 - BACOVA_05380 0.82 +0.6 865,808 - BACOVA_05380 0.83 -0.3 865,846 + BACOVA_05380 0.85 +1.1 865,846 + BACOVA_05380 0.85 -0.6 865,846 + BACOVA_05380 0.85 +0.3 865,847 - BACOVA_05380 0.85 +0.8 865,851 + BACOVA_05380 0.85 -0.7 865,878 + BACOVA_05380 0.86 -0.6 865,889 - BACOVA_05380 0.87 -1.8 866,027 + -0.7 866,028 - -0.9 866,035 + -1.1 866,036 - +0.7 866,036 - +0.5 866,041 - -1.8 866,065 + -0.7 866,151 + +2.1 866,198 - +0.3 866,198 - -0.3 866,231 + +0.6 866,292 - BACOVA_05381 0.13 +0.4 866,381 + BACOVA_05381 0.34 -1.0 866,427 - BACOVA_05381 0.44 -0.2 866,427 - BACOVA_05381 0.44 +1.0 866,436 - BACOVA_05381 0.46 -0.0 866,508 + BACOVA_05381 0.63 +0.2 866,508 + BACOVA_05381 0.63 -0.9 866,517 - BACOVA_05381 0.65 +0.3 866,549 + BACOVA_05381 0.73 +0.2 866,554 - BACOVA_05381 0.74 +2.0 866,579 + BACOVA_05381 0.80 -0.9 866,581 + BACOVA_05381 0.81 +0.0 866,625 + -0.7 866,689 + -0.5 866,690 - -0.5 866,702 - -0.5 866,743 - -0.8 866,745 - -0.8 866,790 + +0.2 866,795 - -0.1 866,836 + -0.2 866,837 - -1.8 866,852 - BACOVA_05382 0.13 -1.4 866,912 + BACOVA_05382 0.27 -0.5 867,003 - BACOVA_05382 0.49 +0.9 867,003 - BACOVA_05382 0.49 +1.8 867,024 - BACOVA_05382 0.54 -2.3 867,027 - BACOVA_05382 0.55 +0.1 867,039 + BACOVA_05382 0.58 -0.9 867,039 + BACOVA_05382 0.58 -2.0 867,040 - BACOVA_05382 0.58 -0.3 867,046 + BACOVA_05382 0.59 -0.8 867,047 - BACOVA_05382 0.60 +1.0 867,047 - BACOVA_05382 0.60 +0.1 867,068 - BACOVA_05382 0.65 +0.1 867,088 + BACOVA_05382 0.70 +0.4 867,124 + BACOVA_05382 0.78 +0.3 867,125 - BACOVA_05382 0.78 -0.6 867,158 - BACOVA_05382 0.86 -0.5
Or see this region's nucleotide sequence