Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05237 and BACOVA_05238 are separated by 82 nucleotides BACOVA_05238 and BACOVA_05240 are separated by 36 nucleotides BACOVA_05240 and BACOVA_05239 overlap by 39 nucleotides BACOVA_05239 and BACOVA_05241 are separated by 2 nucleotides
BACOVA_05237: BACOVA_05237 - transglutaminase-like protein, at 736,635 to 739,391
_05237
BACOVA_05238: BACOVA_05238 - hypothetical protein, at 739,474 to 739,911
_05238
BACOVA_05240: BACOVA_05240 - hypothetical protein, at 739,948 to 740,052
_05240
BACOVA_05239: BACOVA_05239 - heterodisulfide reductase, C subunit, at 740,014 to 740,568
_05239
BACOVA_05241: BACOVA_05241 - cysteine-rich domain protein, at 740,571 to 741,437
_05241
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.474 kb on - strand, within BACOVA_05237 at 738.476 kb on + strand, within BACOVA_05237 at 738.495 kb on - strand, within BACOVA_05237 at 738.495 kb on - strand, within BACOVA_05237 at 738.504 kb on - strand, within BACOVA_05237 at 738.517 kb on + strand, within BACOVA_05237 at 738.526 kb on + strand, within BACOVA_05237 at 738.526 kb on + strand, within BACOVA_05237 at 738.527 kb on - strand, within BACOVA_05237 at 738.527 kb on - strand, within BACOVA_05237 at 738.527 kb on - strand, within BACOVA_05237 at 738.654 kb on - strand, within BACOVA_05237 at 738.662 kb on + strand, within BACOVA_05237 at 738.662 kb on + strand, within BACOVA_05237 at 738.662 kb on + strand, within BACOVA_05237 at 738.669 kb on + strand, within BACOVA_05237 at 738.672 kb on - strand, within BACOVA_05237 at 738.672 kb on - strand, within BACOVA_05237 at 738.681 kb on - strand, within BACOVA_05237 at 738.720 kb on - strand, within BACOVA_05237 at 738.752 kb on + strand, within BACOVA_05237 at 738.752 kb on + strand, within BACOVA_05237 at 738.752 kb on + strand, within BACOVA_05237 at 738.774 kb on + strand, within BACOVA_05237 at 738.778 kb on - strand, within BACOVA_05237 at 738.778 kb on - strand, within BACOVA_05237 at 738.841 kb on + strand, within BACOVA_05237 at 739.071 kb on - strand, within BACOVA_05237 at 739.164 kb on + strand at 739.211 kb on + strand at 739.216 kb on - strand at 739.295 kb on + strand at 739.298 kb on + strand at 739.317 kb on - strand at 739.321 kb on + strand at 739.343 kb on + strand at 739.375 kb on + strand at 739.389 kb on + strand at 739.417 kb on - strand at 739.483 kb on + strand at 739.500 kb on - strand at 739.500 kb on - strand at 739.500 kb on - strand at 739.527 kb on + strand, within BACOVA_05238 at 739.591 kb on - strand, within BACOVA_05238 at 739.598 kb on - strand, within BACOVA_05238 at 739.641 kb on + strand, within BACOVA_05238 at 739.642 kb on - strand, within BACOVA_05238 at 739.650 kb on + strand, within BACOVA_05238 at 739.651 kb on - strand, within BACOVA_05238 at 739.655 kb on + strand, within BACOVA_05238 at 739.656 kb on - strand, within BACOVA_05238 at 739.686 kb on + strand, within BACOVA_05238 at 739.686 kb on + strand, within BACOVA_05238 at 739.687 kb on - strand, within BACOVA_05238 at 739.687 kb on - strand, within BACOVA_05238 at 739.687 kb on - strand, within BACOVA_05238 at 739.693 kb on - strand, within BACOVA_05238 at 739.693 kb on - strand, within BACOVA_05238 at 739.707 kb on + strand, within BACOVA_05238 at 739.707 kb on + strand, within BACOVA_05238 at 739.785 kb on - strand, within BACOVA_05238 at 739.790 kb on + strand, within BACOVA_05238 at 739.790 kb on + strand, within BACOVA_05238 at 739.865 kb on - strand, within BACOVA_05238 at 739.865 kb on - strand, within BACOVA_05238 at 739.865 kb on - strand, within BACOVA_05238 at 739.885 kb on + strand at 739.886 kb on - strand at 739.900 kb on - strand at 739.916 kb on + strand at 739.958 kb on - strand at 739.993 kb on - strand, within BACOVA_05240 at 740.002 kb on - strand, within BACOVA_05240 at 740.074 kb on + strand, within BACOVA_05239 at 740.074 kb on + strand, within BACOVA_05239 at 740.098 kb on - strand, within BACOVA_05239 at 740.146 kb on - strand, within BACOVA_05239 at 740.146 kb on - strand, within BACOVA_05239 at 740.285 kb on - strand, within BACOVA_05239 at 740.318 kb on + strand, within BACOVA_05239 at 740.318 kb on + strand, within BACOVA_05239 at 740.318 kb on + strand, within BACOVA_05239 at 740.319 kb on - strand, within BACOVA_05239 at 740.319 kb on - strand, within BACOVA_05239 at 740.393 kb on - strand, within BACOVA_05239 at 740.433 kb on - strand, within BACOVA_05239 at 740.467 kb on - strand, within BACOVA_05239 at 740.508 kb on - strand, within BACOVA_05239 at 740.520 kb on + strand at 740.570 kb on + strand at 740.571 kb on - strand at 740.622 kb on + strand at 740.623 kb on - strand at 740.747 kb on + strand, within BACOVA_05241 at 740.883 kb on - strand, within BACOVA_05241
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 738,474 - BACOVA_05237 0.67 -0.5 738,476 + BACOVA_05237 0.67 -0.4 738,495 - BACOVA_05237 0.67 -1.1 738,495 - BACOVA_05237 0.67 +0.6 738,504 - BACOVA_05237 0.68 -0.2 738,517 + BACOVA_05237 0.68 -1.2 738,526 + BACOVA_05237 0.69 +0.8 738,526 + BACOVA_05237 0.69 +1.1 738,527 - BACOVA_05237 0.69 -1.9 738,527 - BACOVA_05237 0.69 -0.2 738,527 - BACOVA_05237 0.69 +0.6 738,654 - BACOVA_05237 0.73 -0.8 738,662 + BACOVA_05237 0.74 -1.1 738,662 + BACOVA_05237 0.74 +0.3 738,662 + BACOVA_05237 0.74 +0.6 738,669 + BACOVA_05237 0.74 -0.6 738,672 - BACOVA_05237 0.74 +0.7 738,672 - BACOVA_05237 0.74 -0.3 738,681 - BACOVA_05237 0.74 +0.3 738,720 - BACOVA_05237 0.76 -0.8 738,752 + BACOVA_05237 0.77 +1.3 738,752 + BACOVA_05237 0.77 -0.8 738,752 + BACOVA_05237 0.77 +0.5 738,774 + BACOVA_05237 0.78 -0.4 738,778 - BACOVA_05237 0.78 -0.6 738,778 - BACOVA_05237 0.78 -2.2 738,841 + BACOVA_05237 0.80 -2.3 739,071 - BACOVA_05237 0.88 +1.1 739,164 + -0.8 739,211 + -0.1 739,216 - -1.4 739,295 + -0.2 739,298 + +0.2 739,317 - +0.6 739,321 + +0.0 739,343 + -1.8 739,375 + -1.7 739,389 + -1.9 739,417 - -0.9 739,483 + -0.2 739,500 - +0.7 739,500 - -0.8 739,500 - +1.4 739,527 + BACOVA_05238 0.12 -1.1 739,591 - BACOVA_05238 0.27 +0.8 739,598 - BACOVA_05238 0.28 -0.9 739,641 + BACOVA_05238 0.38 +0.2 739,642 - BACOVA_05238 0.38 -1.7 739,650 + BACOVA_05238 0.40 -0.5 739,651 - BACOVA_05238 0.40 +0.2 739,655 + BACOVA_05238 0.41 +0.1 739,656 - BACOVA_05238 0.42 +0.4 739,686 + BACOVA_05238 0.48 +0.9 739,686 + BACOVA_05238 0.48 -0.2 739,687 - BACOVA_05238 0.49 -0.0 739,687 - BACOVA_05238 0.49 -0.7 739,687 - BACOVA_05238 0.49 -1.7 739,693 - BACOVA_05238 0.50 +0.6 739,693 - BACOVA_05238 0.50 +0.5 739,707 + BACOVA_05238 0.53 -0.2 739,707 + BACOVA_05238 0.53 +0.5 739,785 - BACOVA_05238 0.71 +2.4 739,790 + BACOVA_05238 0.72 +0.0 739,790 + BACOVA_05238 0.72 +0.7 739,865 - BACOVA_05238 0.89 -1.6 739,865 - BACOVA_05238 0.89 +0.9 739,865 - BACOVA_05238 0.89 -0.2 739,885 + -0.1 739,886 - +1.5 739,900 - +0.9 739,916 + -1.5 739,958 - +0.8 739,993 - BACOVA_05240 0.43 -1.2 740,002 - BACOVA_05240 0.51 -1.5 740,074 + BACOVA_05239 0.11 +0.8 740,074 + BACOVA_05239 0.11 -0.4 740,098 - BACOVA_05239 0.15 -0.6 740,146 - BACOVA_05239 0.24 -2.2 740,146 - BACOVA_05239 0.24 -0.3 740,285 - BACOVA_05239 0.49 -0.8 740,318 + BACOVA_05239 0.55 +1.5 740,318 + BACOVA_05239 0.55 -1.1 740,318 + BACOVA_05239 0.55 +0.5 740,319 - BACOVA_05239 0.55 -1.5 740,319 - BACOVA_05239 0.55 +0.4 740,393 - BACOVA_05239 0.68 +0.7 740,433 - BACOVA_05239 0.75 -0.8 740,467 - BACOVA_05239 0.82 +0.8 740,508 - BACOVA_05239 0.89 -2.1 740,520 + -0.4 740,570 + +0.5 740,571 - -0.7 740,622 + -0.4 740,623 - -0.6 740,747 + BACOVA_05241 0.20 -0.9 740,883 - BACOVA_05241 0.36 +0.1
Or see this region's nucleotide sequence