Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05103

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05101 and BACOVA_05102 are separated by 128 nucleotidesBACOVA_05102 and BACOVA_05103 are separated by 165 nucleotidesBACOVA_05103 and BACOVA_05104 are separated by 16 nucleotides BACOVA_05101: BACOVA_05101 - putative membrane protein, MarC family, at 573,192 to 573,791 _05101 BACOVA_05102: BACOVA_05102 - peptidase, S54 family, at 573,920 to 574,621 _05102 BACOVA_05103: BACOVA_05103 - putative glycogen debranching enzyme, archaeal type, at 574,787 to 576,724 _05103 BACOVA_05104: BACOVA_05104 - glycosyltransferase, group 1 family protein, at 576,741 to 578,006 _05104 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 573.801 kb on + strandat 573.802 kb on - strandat 573.813 kb on + strandat 573.813 kb on + strandat 573.813 kb on + strandat 573.818 kb on + strandat 573.923 kb on + strandat 573.964 kb on + strandat 574.051 kb on + strand, within BACOVA_05102at 574.102 kb on - strand, within BACOVA_05102at 574.111 kb on + strand, within BACOVA_05102at 574.112 kb on - strand, within BACOVA_05102at 574.112 kb on - strand, within BACOVA_05102at 574.118 kb on + strand, within BACOVA_05102at 574.118 kb on + strand, within BACOVA_05102at 574.119 kb on - strand, within BACOVA_05102at 574.120 kb on + strand, within BACOVA_05102at 574.134 kb on - strand, within BACOVA_05102at 574.134 kb on - strand, within BACOVA_05102at 574.174 kb on - strand, within BACOVA_05102at 574.210 kb on + strand, within BACOVA_05102at 574.223 kb on + strand, within BACOVA_05102at 574.270 kb on + strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.296 kb on - strand, within BACOVA_05102at 574.310 kb on - strand, within BACOVA_05102at 574.387 kb on + strand, within BACOVA_05102at 574.400 kb on + strand, within BACOVA_05102at 574.415 kb on + strand, within BACOVA_05102at 574.416 kb on - strand, within BACOVA_05102at 574.421 kb on - strand, within BACOVA_05102at 574.425 kb on - strand, within BACOVA_05102at 574.449 kb on + strand, within BACOVA_05102at 574.503 kb on - strand, within BACOVA_05102at 574.505 kb on - strand, within BACOVA_05102at 574.561 kb on + strandat 574.588 kb on + strandat 574.598 kb on - strandat 574.699 kb on - strandat 574.735 kb on - strandat 574.738 kb on + strandat 574.743 kb on - strandat 574.773 kb on - strandat 574.787 kb on - strandat 574.794 kb on - strandat 574.885 kb on + strandat 574.932 kb on + strandat 574.996 kb on - strand, within BACOVA_05103at 575.017 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.074 kb on + strand, within BACOVA_05103at 575.157 kb on + strand, within BACOVA_05103at 575.158 kb on - strand, within BACOVA_05103at 575.186 kb on + strand, within BACOVA_05103at 575.253 kb on + strand, within BACOVA_05103at 575.327 kb on - strand, within BACOVA_05103at 575.330 kb on + strand, within BACOVA_05103at 575.331 kb on - strand, within BACOVA_05103at 575.331 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.353 kb on + strand, within BACOVA_05103at 575.353 kb on + strand, within BACOVA_05103at 575.486 kb on - strand, within BACOVA_05103at 575.658 kb on - strand, within BACOVA_05103at 575.800 kb on - strand, within BACOVA_05103at 575.820 kb on - strand, within BACOVA_05103at 575.944 kb on - strand, within BACOVA_05103at 576.047 kb on - strand, within BACOVA_05103at 576.086 kb on - strand, within BACOVA_05103at 576.162 kb on - strand, within BACOVA_05103at 576.252 kb on - strand, within BACOVA_05103at 576.256 kb on - strand, within BACOVA_05103at 576.263 kb on - strand, within BACOVA_05103at 576.283 kb on - strand, within BACOVA_05103at 576.298 kb on - strand, within BACOVA_05103at 576.359 kb on - strand, within BACOVA_05103at 576.435 kb on - strand, within BACOVA_05103at 576.439 kb on - strand, within BACOVA_05103at 576.451 kb on - strand, within BACOVA_05103at 576.462 kb on - strand, within BACOVA_05103at 576.507 kb on - strand, within BACOVA_05103at 576.706 kb on - strandat 576.713 kb on - strandat 576.717 kb on - strandat 576.781 kb on + strandat 576.783 kb on + strandat 576.808 kb on - strandat 576.814 kb on + strandat 576.945 kb on + strand, within BACOVA_05104at 576.945 kb on + strand, within BACOVA_05104at 576.945 kb on + strand, within BACOVA_05104at 576.946 kb on - strand, within BACOVA_05104at 576.990 kb on + strand, within BACOVA_05104at 576.990 kb on + strand, within BACOVA_05104at 576.993 kb on + strand, within BACOVA_05104at 576.994 kb on - strand, within BACOVA_05104at 577.014 kb on + strand, within BACOVA_05104at 577.031 kb on + strand, within BACOVA_05104at 577.031 kb on + strand, within BACOVA_05104at 577.032 kb on + strand, within BACOVA_05104at 577.032 kb on - strand, within BACOVA_05104at 577.032 kb on - strand, within BACOVA_05104at 577.032 kb on - strand, within BACOVA_05104at 577.055 kb on + strand, within BACOVA_05104at 577.056 kb on - strand, within BACOVA_05104at 577.056 kb on - strand, within BACOVA_05104at 577.154 kb on + strand, within BACOVA_05104at 577.193 kb on - strand, within BACOVA_05104at 577.226 kb on + strand, within BACOVA_05104at 577.226 kb on + strand, within BACOVA_05104at 577.227 kb on - strand, within BACOVA_05104at 577.227 kb on - strand, within BACOVA_05104at 577.242 kb on - strand, within BACOVA_05104at 577.303 kb on - strand, within BACOVA_05104at 577.368 kb on + strand, within BACOVA_05104at 577.404 kb on - strand, within BACOVA_05104at 577.493 kb on + strand, within BACOVA_05104at 577.494 kb on - strand, within BACOVA_05104at 577.515 kb on + strand, within BACOVA_05104at 577.515 kb on + strand, within BACOVA_05104at 577.516 kb on - strand, within BACOVA_05104at 577.556 kb on + strand, within BACOVA_05104at 577.557 kb on - strand, within BACOVA_05104at 577.667 kb on + strand, within BACOVA_05104at 577.668 kb on - strand, within BACOVA_05104at 577.677 kb on + strand, within BACOVA_05104at 577.677 kb on + strand, within BACOVA_05104at 577.678 kb on - strand, within BACOVA_05104at 577.678 kb on - strand, within BACOVA_05104at 577.678 kb on - strand, within BACOVA_05104at 577.686 kb on + strand, within BACOVA_05104at 577.689 kb on - strand, within BACOVA_05104at 577.689 kb on - strand, within BACOVA_05104at 577.702 kb on + strand, within BACOVA_05104at 577.703 kb on - strand, within BACOVA_05104

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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573,801 + -1.1
573,802 - -0.1
573,813 + +0.2
573,813 + -0.1
573,813 + -0.6
573,818 + -1.3
573,923 + -0.6
573,964 + -0.7
574,051 + BACOVA_05102 0.19 +0.1
574,102 - BACOVA_05102 0.26 -1.7
574,111 + BACOVA_05102 0.27 -0.4
574,112 - BACOVA_05102 0.27 -1.3
574,112 - BACOVA_05102 0.27 +1.4
574,118 + BACOVA_05102 0.28 -1.4
574,118 + BACOVA_05102 0.28 -1.0
574,119 - BACOVA_05102 0.28 +0.3
574,120 + BACOVA_05102 0.28 -0.6
574,134 - BACOVA_05102 0.30 +1.0
574,134 - BACOVA_05102 0.30 +0.8
574,174 - BACOVA_05102 0.36 -0.5
574,210 + BACOVA_05102 0.41 -0.7
574,223 + BACOVA_05102 0.43 -0.3
574,270 + BACOVA_05102 0.50 +0.4
574,275 - BACOVA_05102 0.51 -1.7
574,275 - BACOVA_05102 0.51 +0.7
574,275 - BACOVA_05102 0.51 +0.5
574,296 - BACOVA_05102 0.54 +0.4
574,310 - BACOVA_05102 0.56 +1.2
574,387 + BACOVA_05102 0.67 +0.5
574,400 + BACOVA_05102 0.68 -2.4
574,415 + BACOVA_05102 0.71 -1.8
574,416 - BACOVA_05102 0.71 +0.3
574,421 - BACOVA_05102 0.71 +0.5
574,425 - BACOVA_05102 0.72 -0.6
574,449 + BACOVA_05102 0.75 +0.3
574,503 - BACOVA_05102 0.83 +0.7
574,505 - BACOVA_05102 0.83 +0.7
574,561 + -0.8
574,588 + -1.1
574,598 - +0.5
574,699 - -3.9
574,735 - -2.3
574,738 + -2.0
574,743 - -2.3
574,773 - -2.4
574,787 - -1.6
574,794 - -1.4
574,885 + -0.8
574,932 + -2.3
574,996 - BACOVA_05103 0.11 -2.4
575,017 + BACOVA_05103 0.12 +0.0
575,072 + BACOVA_05103 0.15 -0.8
575,072 + BACOVA_05103 0.15 -2.2
575,072 + BACOVA_05103 0.15 -0.0
575,074 + BACOVA_05103 0.15 +0.1
575,157 + BACOVA_05103 0.19 -1.2
575,158 - BACOVA_05103 0.19 -3.0
575,186 + BACOVA_05103 0.21 -1.7
575,253 + BACOVA_05103 0.24 -2.6
575,327 - BACOVA_05103 0.28 -5.1
575,330 + BACOVA_05103 0.28 +1.0
575,331 - BACOVA_05103 0.28 -3.0
575,331 - BACOVA_05103 0.28 -3.3
575,350 - BACOVA_05103 0.29 -2.8
575,350 - BACOVA_05103 0.29 -2.2
575,350 - BACOVA_05103 0.29 -4.3
575,353 + BACOVA_05103 0.29 -0.4
575,353 + BACOVA_05103 0.29 -1.1
575,486 - BACOVA_05103 0.36 -0.6
575,658 - BACOVA_05103 0.45 -1.7
575,800 - BACOVA_05103 0.52 -1.3
575,820 - BACOVA_05103 0.53 -4.1
575,944 - BACOVA_05103 0.60 -1.4
576,047 - BACOVA_05103 0.65 -2.6
576,086 - BACOVA_05103 0.67 -2.7
576,162 - BACOVA_05103 0.71 -1.3
576,252 - BACOVA_05103 0.76 -1.3
576,256 - BACOVA_05103 0.76 -4.0
576,263 - BACOVA_05103 0.76 -3.3
576,283 - BACOVA_05103 0.77 -2.3
576,298 - BACOVA_05103 0.78 -4.4
576,359 - BACOVA_05103 0.81 -2.0
576,435 - BACOVA_05103 0.85 -3.3
576,439 - BACOVA_05103 0.85 -2.2
576,451 - BACOVA_05103 0.86 -0.6
576,462 - BACOVA_05103 0.86 -0.8
576,507 - BACOVA_05103 0.89 -2.1
576,706 - -1.6
576,713 - -3.9
576,717 - -2.0
576,781 + -3.6
576,783 + -2.9
576,808 - -3.1
576,814 + -4.3
576,945 + BACOVA_05104 0.16 -3.3
576,945 + BACOVA_05104 0.16 -3.3
576,945 + BACOVA_05104 0.16 -1.6
576,946 - BACOVA_05104 0.16 -2.5
576,990 + BACOVA_05104 0.20 -2.4
576,990 + BACOVA_05104 0.20 -2.0
576,993 + BACOVA_05104 0.20 +0.2
576,994 - BACOVA_05104 0.20 -4.0
577,014 + BACOVA_05104 0.22 -2.7
577,031 + BACOVA_05104 0.23 -3.8
577,031 + BACOVA_05104 0.23 -2.4
577,032 + BACOVA_05104 0.23 -1.3
577,032 - BACOVA_05104 0.23 -4.0
577,032 - BACOVA_05104 0.23 -1.7
577,032 - BACOVA_05104 0.23 -4.9
577,055 + BACOVA_05104 0.25 -3.6
577,056 - BACOVA_05104 0.25 -1.3
577,056 - BACOVA_05104 0.25 -4.3
577,154 + BACOVA_05104 0.33 -2.4
577,193 - BACOVA_05104 0.36 -3.3
577,226 + BACOVA_05104 0.38 -1.8
577,226 + BACOVA_05104 0.38 -3.5
577,227 - BACOVA_05104 0.38 -4.0
577,227 - BACOVA_05104 0.38 -1.8
577,242 - BACOVA_05104 0.40 -3.1
577,303 - BACOVA_05104 0.44 -4.6
577,368 + BACOVA_05104 0.50 -2.8
577,404 - BACOVA_05104 0.52 -2.3
577,493 + BACOVA_05104 0.59 -2.6
577,494 - BACOVA_05104 0.59 -2.2
577,515 + BACOVA_05104 0.61 -1.7
577,515 + BACOVA_05104 0.61 -2.3
577,516 - BACOVA_05104 0.61 -2.6
577,556 + BACOVA_05104 0.64 -1.4
577,557 - BACOVA_05104 0.64 -3.5
577,667 + BACOVA_05104 0.73 -4.5
577,668 - BACOVA_05104 0.73 -3.3
577,677 + BACOVA_05104 0.74 -1.8
577,677 + BACOVA_05104 0.74 -2.4
577,678 - BACOVA_05104 0.74 -2.8
577,678 - BACOVA_05104 0.74 -4.2
577,678 - BACOVA_05104 0.74 -2.6
577,686 + BACOVA_05104 0.75 -3.7
577,689 - BACOVA_05104 0.75 -1.4
577,689 - BACOVA_05104 0.75 -4.7
577,702 + BACOVA_05104 0.76 -2.4
577,703 - BACOVA_05104 0.76 -0.8

Or see this region's nucleotide sequence