Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04228 and BACOVA_04229 are separated by 114 nucleotides BACOVA_04229 and BACOVA_04230 overlap by 8 nucleotides BACOVA_04230 and BACOVA_04231 are separated by 283 nucleotides
BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418
_04228
BACOVA_04229: BACOVA_04229 - hypothetical protein, at 108,533 to 108,637
_04229
BACOVA_04230: BACOVA_04230 - DNA-binding protein HU, at 108,630 to 108,905
_04230
BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763
_04231
Position (kb)
108
109 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 107.648 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.649 kb on - strand, within BACOVA_04228 at 107.680 kb on + strand, within BACOVA_04228 at 107.699 kb on - strand, within BACOVA_04228 at 107.702 kb on + strand, within BACOVA_04228 at 107.703 kb on - strand, within BACOVA_04228 at 107.704 kb on + strand, within BACOVA_04228 at 107.705 kb on - strand, within BACOVA_04228 at 107.730 kb on + strand, within BACOVA_04228 at 107.731 kb on - strand, within BACOVA_04228 at 107.863 kb on + strand, within BACOVA_04228 at 107.920 kb on + strand, within BACOVA_04228 at 107.987 kb on + strand, within BACOVA_04228 at 108.047 kb on - strand, within BACOVA_04228 at 108.052 kb on - strand, within BACOVA_04228 at 108.068 kb on - strand, within BACOVA_04228 at 108.184 kb on - strand, within BACOVA_04228 at 108.201 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.262 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.314 kb on - strand at 108.393 kb on - strand at 108.419 kb on - strand at 108.435 kb on + strand at 108.436 kb on - strand at 108.438 kb on + strand at 108.443 kb on - strand at 108.450 kb on - strand at 108.450 kb on - strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.457 kb on - strand at 108.457 kb on - strand at 108.494 kb on - strand at 108.510 kb on + strand at 108.510 kb on + strand at 108.543 kb on + strand at 108.543 kb on + strand at 108.919 kb on + strand at 108.919 kb on + strand at 109.001 kb on + strand at 109.079 kb on + strand at 109.079 kb on + strand at 109.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 107,648 + BACOVA_04228 0.27 +0.9 107,648 + BACOVA_04228 0.27 +1.8 107,649 - BACOVA_04228 0.27 +0.1 107,680 + BACOVA_04228 0.30 -0.2 107,699 - BACOVA_04228 0.31 +0.0 107,702 + BACOVA_04228 0.32 +1.0 107,703 - BACOVA_04228 0.32 +0.6 107,704 + BACOVA_04228 0.32 -0.3 107,705 - BACOVA_04228 0.32 -0.5 107,730 + BACOVA_04228 0.34 -0.8 107,731 - BACOVA_04228 0.34 +1.4 107,863 + BACOVA_04228 0.47 -1.0 107,920 + BACOVA_04228 0.52 -1.5 107,987 + BACOVA_04228 0.59 -1.7 108,047 - BACOVA_04228 0.65 +1.0 108,052 - BACOVA_04228 0.65 +0.8 108,068 - BACOVA_04228 0.67 +0.4 108,184 - BACOVA_04228 0.78 +1.3 108,201 + BACOVA_04228 0.79 -0.2 108,242 + BACOVA_04228 0.83 +0.1 108,242 + BACOVA_04228 0.83 +0.5 108,262 + BACOVA_04228 0.85 -0.0 108,282 + BACOVA_04228 0.87 -0.2 108,282 + BACOVA_04228 0.87 -0.0 108,314 - -1.0 108,393 - +1.8 108,419 - -1.0 108,435 + +0.4 108,436 - -0.1 108,438 + -1.4 108,443 - -0.6 108,450 - +0.2 108,450 - -2.2 108,456 + -1.2 108,456 + -0.2 108,457 - -1.4 108,457 - -0.1 108,494 - -0.1 108,510 + -1.1 108,510 + +0.2 108,543 + +0.2 108,543 + -0.4 108,919 + -0.9 108,919 + +0.2 109,001 + +0.2 109,079 + -1.2 109,079 + -2.0 109,151 + -0.4
Or see this region's nucleotide sequence