Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04015

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04014 and BACOVA_04015 overlap by 11 nucleotidesBACOVA_04015 and BACOVA_04016 are separated by 117 nucleotides BACOVA_04014: BACOVA_04014 - hypothetical protein, at 345,559 to 346,887 _04014 BACOVA_04015: BACOVA_04015 - hypothetical protein, at 346,877 to 348,994 _04015 BACOVA_04016: BACOVA_04016 - hypothetical protein, at 349,112 to 349,858 _04016 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.079 kb on + strand, within BACOVA_04014at 346.080 kb on - strand, within BACOVA_04014at 346.135 kb on + strand, within BACOVA_04014at 346.136 kb on - strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.142 kb on - strand, within BACOVA_04014at 346.144 kb on - strand, within BACOVA_04014at 346.189 kb on + strand, within BACOVA_04014at 346.190 kb on - strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.278 kb on - strand, within BACOVA_04014at 346.407 kb on + strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.526 kb on - strand, within BACOVA_04014at 346.585 kb on + strand, within BACOVA_04014at 346.592 kb on - strand, within BACOVA_04014at 346.609 kb on - strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.691 kb on + strand, within BACOVA_04014at 346.740 kb on + strand, within BACOVA_04014at 346.758 kb on + strandat 346.764 kb on + strandat 346.799 kb on - strandat 346.810 kb on + strandat 346.870 kb on + strandat 346.871 kb on - strandat 346.916 kb on - strandat 346.919 kb on + strandat 346.928 kb on + strandat 346.943 kb on - strandat 346.980 kb on - strandat 346.987 kb on + strandat 346.989 kb on + strandat 347.222 kb on + strand, within BACOVA_04015at 347.282 kb on - strand, within BACOVA_04015at 347.308 kb on - strand, within BACOVA_04015at 347.327 kb on + strand, within BACOVA_04015at 347.345 kb on - strand, within BACOVA_04015at 347.414 kb on - strand, within BACOVA_04015at 347.454 kb on - strand, within BACOVA_04015at 347.491 kb on - strand, within BACOVA_04015at 347.544 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.633 kb on + strand, within BACOVA_04015at 347.645 kb on - strand, within BACOVA_04015at 347.648 kb on + strand, within BACOVA_04015at 347.799 kb on + strand, within BACOVA_04015at 347.800 kb on - strand, within BACOVA_04015at 347.852 kb on + strand, within BACOVA_04015at 347.853 kb on - strand, within BACOVA_04015at 347.909 kb on + strand, within BACOVA_04015at 347.909 kb on + strand, within BACOVA_04015at 347.923 kb on + strand, within BACOVA_04015at 347.998 kb on - strand, within BACOVA_04015at 348.008 kb on + strand, within BACOVA_04015at 348.013 kb on - strand, within BACOVA_04015at 348.023 kb on + strand, within BACOVA_04015at 348.024 kb on - strand, within BACOVA_04015at 348.032 kb on + strand, within BACOVA_04015at 348.043 kb on + strand, within BACOVA_04015at 348.085 kb on + strand, within BACOVA_04015at 348.250 kb on - strand, within BACOVA_04015at 348.334 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.418 kb on - strand, within BACOVA_04015at 348.459 kb on + strand, within BACOVA_04015at 348.591 kb on + strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.613 kb on - strand, within BACOVA_04015at 348.616 kb on - strand, within BACOVA_04015at 348.627 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.656 kb on - strand, within BACOVA_04015at 348.657 kb on + strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.710 kb on + strand, within BACOVA_04015at 348.714 kb on - strand, within BACOVA_04015at 348.741 kb on - strand, within BACOVA_04015at 348.751 kb on - strand, within BACOVA_04015at 348.756 kb on + strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.763 kb on - strand, within BACOVA_04015at 348.815 kb on + strandat 348.872 kb on - strandat 348.923 kb on - strandat 348.951 kb on - strandat 348.960 kb on + strandat 348.960 kb on + strandat 348.960 kb on + strandat 349.003 kb on + strandat 349.004 kb on - strandat 349.006 kb on - strandat 349.009 kb on - strandat 349.047 kb on - strandat 349.050 kb on - strandat 349.076 kb on + strandat 349.077 kb on - strandat 349.104 kb on + strandat 349.141 kb on + strandat 349.183 kb on + strandat 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.192 kb on - strand, within BACOVA_04016at 349.223 kb on - strand, within BACOVA_04016at 349.227 kb on - strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.328 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.357 kb on - strand, within BACOVA_04016at 349.367 kb on - strand, within BACOVA_04016at 349.422 kb on - strand, within BACOVA_04016at 349.472 kb on + strand, within BACOVA_04016at 349.496 kb on + strand, within BACOVA_04016at 349.503 kb on + strand, within BACOVA_04016at 349.527 kb on + strand, within BACOVA_04016at 349.561 kb on - strand, within BACOVA_04016at 349.739 kb on + strand, within BACOVA_04016at 349.764 kb on - strand, within BACOVA_04016at 349.808 kb on - strandat 349.823 kb on + strandat 349.823 kb on + strandat 349.847 kb on - strandat 349.872 kb on + strandat 349.893 kb on - strandat 349.906 kb on - strandat 349.924 kb on + strandat 349.924 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.939 kb on - strandat 349.945 kb on + strandat 349.946 kb on - strandat 349.951 kb on - strandat 349.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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346,079 + BACOVA_04014 0.39 +1.3
346,080 - BACOVA_04014 0.39 +1.0
346,135 + BACOVA_04014 0.43 -1.2
346,136 - BACOVA_04014 0.43 +0.3
346,141 + BACOVA_04014 0.44 -1.3
346,141 + BACOVA_04014 0.44 +0.7
346,142 - BACOVA_04014 0.44 +0.4
346,144 - BACOVA_04014 0.44 -0.1
346,189 + BACOVA_04014 0.47 -1.6
346,190 - BACOVA_04014 0.47 -2.2
346,277 + BACOVA_04014 0.54 -0.1
346,277 + BACOVA_04014 0.54 -0.6
346,278 - BACOVA_04014 0.54 -0.5
346,407 + BACOVA_04014 0.64 +0.1
346,408 - BACOVA_04014 0.64 -0.0
346,408 - BACOVA_04014 0.64 -0.8
346,408 - BACOVA_04014 0.64 -0.8
346,526 - BACOVA_04014 0.73 +0.0
346,585 + BACOVA_04014 0.77 -1.3
346,592 - BACOVA_04014 0.78 -1.0
346,609 - BACOVA_04014 0.79 +0.6
346,689 + BACOVA_04014 0.85 -0.8
346,689 + BACOVA_04014 0.85 -1.1
346,691 + BACOVA_04014 0.85 -0.5
346,740 + BACOVA_04014 0.89 -1.2
346,758 + +1.8
346,764 + +0.8
346,799 - +1.1
346,810 + +0.6
346,870 + +0.0
346,871 - +1.0
346,916 - +1.0
346,919 + -2.1
346,928 + -0.4
346,943 - +0.0
346,980 - +0.6
346,987 + -0.3
346,989 + -1.2
347,222 + BACOVA_04015 0.16 -0.2
347,282 - BACOVA_04015 0.19 -0.2
347,308 - BACOVA_04015 0.20 -1.2
347,327 + BACOVA_04015 0.21 +0.7
347,345 - BACOVA_04015 0.22 +0.8
347,414 - BACOVA_04015 0.25 +0.2
347,454 - BACOVA_04015 0.27 -0.3
347,491 - BACOVA_04015 0.29 -0.9
347,544 - BACOVA_04015 0.31 +1.1
347,552 - BACOVA_04015 0.32 -1.5
347,552 - BACOVA_04015 0.32 +0.7
347,633 + BACOVA_04015 0.36 -0.8
347,645 - BACOVA_04015 0.36 +0.2
347,648 + BACOVA_04015 0.36 -1.2
347,799 + BACOVA_04015 0.44 -0.1
347,800 - BACOVA_04015 0.44 -0.7
347,852 + BACOVA_04015 0.46 -0.8
347,853 - BACOVA_04015 0.46 -2.3
347,909 + BACOVA_04015 0.49 -1.9
347,909 + BACOVA_04015 0.49 -0.2
347,923 + BACOVA_04015 0.49 -0.0
347,998 - BACOVA_04015 0.53 -1.6
348,008 + BACOVA_04015 0.53 +0.0
348,013 - BACOVA_04015 0.54 -0.0
348,023 + BACOVA_04015 0.54 +0.8
348,024 - BACOVA_04015 0.54 +0.7
348,032 + BACOVA_04015 0.55 -1.6
348,043 + BACOVA_04015 0.55 +0.5
348,085 + BACOVA_04015 0.57 +0.1
348,250 - BACOVA_04015 0.65 +0.8
348,334 + BACOVA_04015 0.69 -1.7
348,351 + BACOVA_04015 0.70 +0.2
348,351 + BACOVA_04015 0.70 -1.2
348,418 - BACOVA_04015 0.73 -1.6
348,459 + BACOVA_04015 0.75 -0.5
348,591 + BACOVA_04015 0.81 -0.1
348,596 - BACOVA_04015 0.81 -0.0
348,596 - BACOVA_04015 0.81 +1.1
348,613 - BACOVA_04015 0.82 -0.5
348,616 - BACOVA_04015 0.82 -0.0
348,627 + BACOVA_04015 0.83 -0.4
348,655 + BACOVA_04015 0.84 -0.5
348,655 + BACOVA_04015 0.84 +1.0
348,656 - BACOVA_04015 0.84 +1.0
348,657 + BACOVA_04015 0.84 -0.3
348,658 - BACOVA_04015 0.84 +1.5
348,658 - BACOVA_04015 0.84 -0.3
348,710 + BACOVA_04015 0.87 -0.4
348,714 - BACOVA_04015 0.87 +0.2
348,741 - BACOVA_04015 0.88 -0.9
348,751 - BACOVA_04015 0.88 -0.6
348,756 + BACOVA_04015 0.89 +0.2
348,757 - BACOVA_04015 0.89 +0.2
348,757 - BACOVA_04015 0.89 -1.8
348,763 - BACOVA_04015 0.89 +0.4
348,815 + -0.2
348,872 - -0.2
348,923 - -0.8
348,951 - +0.2
348,960 + -0.2
348,960 + +0.6
348,960 + +0.2
349,003 + +1.3
349,004 - +0.5
349,006 - +0.2
349,009 - -1.3
349,047 - -0.2
349,050 - -1.2
349,076 + -0.0
349,077 - -0.2
349,104 + +0.3
349,141 + -0.9
349,183 + +2.0
349,191 + BACOVA_04016 0.11 -0.9
349,191 + BACOVA_04016 0.11 -1.3
349,191 + BACOVA_04016 0.11 +1.1
349,192 - BACOVA_04016 0.11 -0.2
349,223 - BACOVA_04016 0.15 -2.0
349,227 - BACOVA_04016 0.15 -1.6
349,294 + BACOVA_04016 0.24 +0.6
349,294 + BACOVA_04016 0.24 -1.0
349,328 + BACOVA_04016 0.29 +0.0
349,356 + BACOVA_04016 0.33 +0.2
349,356 + BACOVA_04016 0.33 +1.0
349,357 - BACOVA_04016 0.33 -0.5
349,367 - BACOVA_04016 0.34 -1.3
349,422 - BACOVA_04016 0.41 -0.2
349,472 + BACOVA_04016 0.48 +1.2
349,496 + BACOVA_04016 0.51 -0.6
349,503 + BACOVA_04016 0.52 +1.0
349,527 + BACOVA_04016 0.56 -1.2
349,561 - BACOVA_04016 0.60 +1.0
349,739 + BACOVA_04016 0.84 -1.7
349,764 - BACOVA_04016 0.87 -2.3
349,808 - -1.6
349,823 + +0.8
349,823 + +0.3
349,847 - -1.5
349,872 + -0.2
349,893 - +0.4
349,906 - -0.8
349,924 + -1.2
349,924 + -1.9
349,938 + -1.3
349,938 + -1.0
349,938 + +1.6
349,939 - -1.0
349,945 + +0.1
349,946 - +0.2
349,951 - -3.1
349,988 - +1.0

Or see this region's nucleotide sequence