Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03819

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03818 and BACOVA_03819 are separated by 80 nucleotidesBACOVA_03819 and BACOVA_03820 are separated by 18 nucleotides BACOVA_03818: BACOVA_03818 - cation diffusion facilitator family transporter, at 164,782 to 165,684 _03818 BACOVA_03819: BACOVA_03819 - thioesterase family protein, at 165,765 to 166,145 _03819 BACOVA_03820: BACOVA_03820 - hypothetical protein, at 166,164 to 167,045 _03820 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.770 kb on + strandat 164.877 kb on + strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.908 kb on - strand, within BACOVA_03818at 164.910 kb on + strand, within BACOVA_03818at 164.964 kb on + strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.099 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.103 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.162 kb on + strand, within BACOVA_03818at 165.165 kb on + strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.222 kb on - strand, within BACOVA_03818at 165.246 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.358 kb on + strand, within BACOVA_03818at 165.375 kb on + strand, within BACOVA_03818at 165.400 kb on - strand, within BACOVA_03818at 165.409 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.430 kb on - strand, within BACOVA_03818at 165.438 kb on + strand, within BACOVA_03818at 165.446 kb on + strand, within BACOVA_03818at 165.460 kb on - strand, within BACOVA_03818at 165.503 kb on - strand, within BACOVA_03818at 165.514 kb on + strand, within BACOVA_03818at 165.547 kb on + strand, within BACOVA_03818at 165.564 kb on - strand, within BACOVA_03818at 165.586 kb on + strand, within BACOVA_03818at 165.602 kb on - strandat 165.619 kb on + strandat 165.624 kb on + strandat 165.657 kb on + strandat 165.689 kb on + strandat 165.697 kb on + strandat 165.697 kb on + strandat 165.698 kb on - strandat 165.698 kb on - strandat 165.702 kb on + strandat 165.711 kb on + strandat 165.736 kb on + strandat 165.812 kb on - strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.819 kb on - strand, within BACOVA_03819at 165.858 kb on + strand, within BACOVA_03819at 165.874 kb on - strand, within BACOVA_03819at 165.909 kb on + strand, within BACOVA_03819at 165.951 kb on - strand, within BACOVA_03819at 165.977 kb on + strand, within BACOVA_03819at 165.978 kb on - strand, within BACOVA_03819at 166.120 kb on - strandat 166.122 kb on - strandat 166.146 kb on - strandat 166.159 kb on - strandat 166.160 kb on + strandat 166.170 kb on - strandat 166.170 kb on - strandat 166.175 kb on + strandat 166.241 kb on + strandat 166.241 kb on + strandat 166.242 kb on - strandat 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.257 kb on - strand, within BACOVA_03820at 166.259 kb on - strand, within BACOVA_03820at 166.292 kb on + strand, within BACOVA_03820at 166.308 kb on + strand, within BACOVA_03820at 166.314 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.336 kb on - strand, within BACOVA_03820at 166.341 kb on - strand, within BACOVA_03820at 166.435 kb on - strand, within BACOVA_03820at 166.498 kb on + strand, within BACOVA_03820at 166.547 kb on + strand, within BACOVA_03820at 166.570 kb on - strand, within BACOVA_03820at 166.583 kb on + strand, within BACOVA_03820at 166.613 kb on - strand, within BACOVA_03820at 166.617 kb on - strand, within BACOVA_03820at 166.640 kb on + strand, within BACOVA_03820at 166.652 kb on - strand, within BACOVA_03820at 166.757 kb on - strand, within BACOVA_03820at 166.768 kb on + strand, within BACOVA_03820at 166.768 kb on + strand, within BACOVA_03820at 166.769 kb on - strand, within BACOVA_03820at 166.771 kb on + strand, within BACOVA_03820at 166.772 kb on - strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.778 kb on - strand, within BACOVA_03820at 166.809 kb on + strand, within BACOVA_03820at 166.810 kb on - strand, within BACOVA_03820at 166.845 kb on - strand, within BACOVA_03820at 166.979 kb on + strandat 166.980 kb on - strandat 166.980 kb on - strandat 166.986 kb on + strandat 166.987 kb on - strandat 167.107 kb on - strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.128 kb on - strandat 167.132 kb on - strandat 167.133 kb on + strandat 167.137 kb on + strandat 167.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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164,770 + -0.2
164,877 + BACOVA_03818 0.11 +0.7
164,878 - BACOVA_03818 0.11 -1.6
164,878 - BACOVA_03818 0.11 +0.4
164,878 - BACOVA_03818 0.11 +0.5
164,908 - BACOVA_03818 0.14 -1.0
164,910 + BACOVA_03818 0.14 +0.9
164,964 + BACOVA_03818 0.20 -2.4
165,017 - BACOVA_03818 0.26 -0.7
165,017 - BACOVA_03818 0.26 +0.2
165,099 + BACOVA_03818 0.35 +0.2
165,102 + BACOVA_03818 0.35 -0.1
165,102 + BACOVA_03818 0.35 -0.1
165,103 - BACOVA_03818 0.36 -0.2
165,154 - BACOVA_03818 0.41 -0.3
165,154 - BACOVA_03818 0.41 +1.5
165,155 + BACOVA_03818 0.41 -0.7
165,155 + BACOVA_03818 0.41 +0.6
165,156 - BACOVA_03818 0.41 +0.5
165,156 - BACOVA_03818 0.41 +0.5
165,156 - BACOVA_03818 0.41 +1.4
165,159 + BACOVA_03818 0.42 -1.6
165,159 + BACOVA_03818 0.42 +0.5
165,160 - BACOVA_03818 0.42 +1.0
165,160 - BACOVA_03818 0.42 +1.1
165,162 + BACOVA_03818 0.42 +0.6
165,165 + BACOVA_03818 0.42 +0.7
165,202 - BACOVA_03818 0.47 -0.1
165,202 - BACOVA_03818 0.47 -0.1
165,222 - BACOVA_03818 0.49 +1.2
165,246 + BACOVA_03818 0.51 +1.2
165,349 + BACOVA_03818 0.63 -0.8
165,349 + BACOVA_03818 0.63 +1.0
165,358 + BACOVA_03818 0.64 -0.8
165,375 + BACOVA_03818 0.66 -2.0
165,400 - BACOVA_03818 0.68 +0.8
165,409 + BACOVA_03818 0.69 +0.2
165,429 + BACOVA_03818 0.72 -0.1
165,429 + BACOVA_03818 0.72 +0.3
165,429 + BACOVA_03818 0.72 -1.9
165,430 - BACOVA_03818 0.72 +0.9
165,438 + BACOVA_03818 0.73 +0.1
165,446 + BACOVA_03818 0.74 -1.7
165,460 - BACOVA_03818 0.75 +0.8
165,503 - BACOVA_03818 0.80 +0.2
165,514 + BACOVA_03818 0.81 +0.2
165,547 + BACOVA_03818 0.85 -0.1
165,564 - BACOVA_03818 0.87 +0.1
165,586 + BACOVA_03818 0.89 -0.2
165,602 - +0.6
165,619 + +0.9
165,624 + +0.1
165,657 + +0.4
165,689 + -0.1
165,697 + -1.4
165,697 + -1.2
165,698 - -0.8
165,698 - -0.8
165,702 + -0.6
165,711 + +0.9
165,736 + +1.4
165,812 - BACOVA_03819 0.12 -0.5
165,816 + BACOVA_03819 0.13 +0.6
165,816 + BACOVA_03819 0.13 +0.6
165,816 + BACOVA_03819 0.13 +0.1
165,817 - BACOVA_03819 0.14 +1.1
165,817 - BACOVA_03819 0.14 -2.0
165,817 - BACOVA_03819 0.14 -2.1
165,819 - BACOVA_03819 0.14 -1.7
165,858 + BACOVA_03819 0.24 -0.7
165,874 - BACOVA_03819 0.29 -0.5
165,909 + BACOVA_03819 0.38 +0.3
165,951 - BACOVA_03819 0.49 -0.2
165,977 + BACOVA_03819 0.56 -1.0
165,978 - BACOVA_03819 0.56 -1.3
166,120 - -1.0
166,122 - +0.2
166,146 - -0.2
166,159 - +0.4
166,160 + -1.0
166,170 - +0.8
166,170 - -0.1
166,175 + +0.6
166,241 + +0.3
166,241 + -0.2
166,242 - +0.6
166,256 + BACOVA_03820 0.10 -1.0
166,256 + BACOVA_03820 0.10 -0.6
166,256 + BACOVA_03820 0.10 -0.6
166,257 - BACOVA_03820 0.11 +1.6
166,259 - BACOVA_03820 0.11 -1.5
166,292 + BACOVA_03820 0.15 +1.3
166,308 + BACOVA_03820 0.16 -1.1
166,314 + BACOVA_03820 0.17 +0.1
166,332 + BACOVA_03820 0.19 -0.9
166,332 + BACOVA_03820 0.19 +0.2
166,336 - BACOVA_03820 0.20 -0.4
166,341 - BACOVA_03820 0.20 +1.6
166,435 - BACOVA_03820 0.31 -2.1
166,498 + BACOVA_03820 0.38 -0.0
166,547 + BACOVA_03820 0.43 +0.5
166,570 - BACOVA_03820 0.46 +0.5
166,583 + BACOVA_03820 0.48 +1.1
166,613 - BACOVA_03820 0.51 +0.1
166,617 - BACOVA_03820 0.51 -0.8
166,640 + BACOVA_03820 0.54 +0.1
166,652 - BACOVA_03820 0.55 +0.5
166,757 - BACOVA_03820 0.67 +1.8
166,768 + BACOVA_03820 0.68 -1.2
166,768 + BACOVA_03820 0.68 -1.2
166,769 - BACOVA_03820 0.69 -0.2
166,771 + BACOVA_03820 0.69 +0.6
166,772 - BACOVA_03820 0.69 +0.2
166,777 + BACOVA_03820 0.70 -0.3
166,777 + BACOVA_03820 0.70 -1.2
166,777 + BACOVA_03820 0.70 -2.6
166,778 - BACOVA_03820 0.70 +0.8
166,809 + BACOVA_03820 0.73 -0.9
166,810 - BACOVA_03820 0.73 -2.5
166,845 - BACOVA_03820 0.77 +0.4
166,979 + -0.7
166,980 - +1.4
166,980 - +0.4
166,986 + +0.2
166,987 - -0.7
167,107 - -0.5
167,127 + -0.9
167,127 + -2.2
167,127 + -0.8
167,127 + +0.3
167,127 + +1.6
167,127 + -1.1
167,128 - -0.2
167,132 - +0.1
167,133 + +1.5
167,137 + -0.0
167,138 - -1.1

Or see this region's nucleotide sequence