Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03679

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03678 and BACOVA_03679 are separated by 4 nucleotidesBACOVA_03679 and BACOVA_03680 are separated by 21 nucleotides BACOVA_03678: BACOVA_03678 - polysaccharide biosynthesis protein, at 4,379 to 5,833 _03678 BACOVA_03679: BACOVA_03679 - branched-chain-amino-acid transaminase, at 5,838 to 6,767 _03679 BACOVA_03680: BACOVA_03680 - Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein, at 6,789 to 8,015 _03680 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.860 kb on - strand, within BACOVA_03678at 4.878 kb on + strand, within BACOVA_03678at 4.879 kb on - strand, within BACOVA_03678at 4.882 kb on + strand, within BACOVA_03678at 4.883 kb on - strand, within BACOVA_03678at 4.905 kb on - strand, within BACOVA_03678at 4.948 kb on + strand, within BACOVA_03678at 4.980 kb on + strand, within BACOVA_03678at 4.994 kb on - strand, within BACOVA_03678at 5.041 kb on + strand, within BACOVA_03678at 5.045 kb on + strand, within BACOVA_03678at 5.046 kb on - strand, within BACOVA_03678at 5.054 kb on - strand, within BACOVA_03678at 5.074 kb on + strand, within BACOVA_03678at 5.098 kb on + strand, within BACOVA_03678at 5.098 kb on + strand, within BACOVA_03678at 5.193 kb on + strand, within BACOVA_03678at 5.326 kb on + strand, within BACOVA_03678at 5.379 kb on - strand, within BACOVA_03678at 5.399 kb on + strand, within BACOVA_03678at 5.433 kb on - strand, within BACOVA_03678at 5.486 kb on + strand, within BACOVA_03678at 5.496 kb on - strand, within BACOVA_03678at 5.496 kb on - strand, within BACOVA_03678at 5.509 kb on + strand, within BACOVA_03678at 5.520 kb on + strand, within BACOVA_03678at 5.520 kb on + strand, within BACOVA_03678at 5.552 kb on - strand, within BACOVA_03678at 5.569 kb on + strand, within BACOVA_03678at 5.598 kb on - strand, within BACOVA_03678at 5.621 kb on + strand, within BACOVA_03678at 5.642 kb on + strand, within BACOVA_03678at 5.643 kb on - strand, within BACOVA_03678at 5.677 kb on + strand, within BACOVA_03678at 5.677 kb on + strand, within BACOVA_03678at 5.678 kb on - strand, within BACOVA_03678at 5.678 kb on - strand, within BACOVA_03678at 5.708 kb on + strandat 5.729 kb on + strandat 5.781 kb on - strandat 5.814 kb on - strandat 5.844 kb on + strandat 5.844 kb on + strandat 5.845 kb on - strandat 5.867 kb on + strandat 5.900 kb on - strandat 5.900 kb on - strandat 5.906 kb on + strandat 5.979 kb on + strand, within BACOVA_03679at 5.980 kb on - strand, within BACOVA_03679at 6.021 kb on - strand, within BACOVA_03679at 6.022 kb on + strand, within BACOVA_03679at 6.022 kb on + strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.023 kb on - strand, within BACOVA_03679at 6.107 kb on + strand, within BACOVA_03679at 6.118 kb on - strand, within BACOVA_03679at 6.118 kb on - strand, within BACOVA_03679at 6.192 kb on + strand, within BACOVA_03679at 6.218 kb on + strand, within BACOVA_03679at 6.218 kb on + strand, within BACOVA_03679at 6.224 kb on + strand, within BACOVA_03679at 6.224 kb on + strand, within BACOVA_03679at 6.225 kb on - strand, within BACOVA_03679at 6.229 kb on + strand, within BACOVA_03679at 6.274 kb on + strand, within BACOVA_03679at 6.274 kb on + strand, within BACOVA_03679at 6.338 kb on + strand, within BACOVA_03679at 6.338 kb on + strand, within BACOVA_03679at 6.339 kb on - strand, within BACOVA_03679at 6.364 kb on + strand, within BACOVA_03679at 6.392 kb on + strand, within BACOVA_03679at 6.485 kb on - strand, within BACOVA_03679at 6.536 kb on + strand, within BACOVA_03679at 6.539 kb on - strand, within BACOVA_03679at 6.611 kb on - strand, within BACOVA_03679at 6.611 kb on - strand, within BACOVA_03679at 6.681 kb on - strandat 6.746 kb on + strandat 6.750 kb on - strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.754 kb on - strandat 6.767 kb on + strandat 6.773 kb on + strandat 6.773 kb on + strandat 6.787 kb on + strandat 6.843 kb on + strandat 6.919 kb on + strand, within BACOVA_03680at 6.919 kb on + strand, within BACOVA_03680at 6.919 kb on + strand, within BACOVA_03680at 6.973 kb on + strand, within BACOVA_03680at 7.033 kb on + strand, within BACOVA_03680at 7.041 kb on - strand, within BACOVA_03680at 7.080 kb on - strand, within BACOVA_03680at 7.091 kb on + strand, within BACOVA_03680at 7.091 kb on + strand, within BACOVA_03680at 7.192 kb on - strand, within BACOVA_03680at 7.192 kb on - strand, within BACOVA_03680at 7.212 kb on + strand, within BACOVA_03680at 7.212 kb on + strand, within BACOVA_03680at 7.213 kb on - strand, within BACOVA_03680at 7.268 kb on + strand, within BACOVA_03680at 7.279 kb on + strand, within BACOVA_03680at 7.279 kb on + strand, within BACOVA_03680at 7.401 kb on + strand, within BACOVA_03680at 7.435 kb on - strand, within BACOVA_03680at 7.506 kb on + strand, within BACOVA_03680at 7.507 kb on - strand, within BACOVA_03680at 7.566 kb on + strand, within BACOVA_03680at 7.566 kb on + strand, within BACOVA_03680at 7.567 kb on - strand, within BACOVA_03680at 7.573 kb on + strand, within BACOVA_03680at 7.573 kb on + strand, within BACOVA_03680at 7.578 kb on - strand, within BACOVA_03680at 7.578 kb on - strand, within BACOVA_03680

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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4,860 - BACOVA_03678 0.33 -1.5
4,878 + BACOVA_03678 0.34 +0.8
4,879 - BACOVA_03678 0.34 +1.3
4,882 + BACOVA_03678 0.35 +0.1
4,883 - BACOVA_03678 0.35 -1.1
4,905 - BACOVA_03678 0.36 +1.3
4,948 + BACOVA_03678 0.39 -2.0
4,980 + BACOVA_03678 0.41 -1.4
4,994 - BACOVA_03678 0.42 -0.3
5,041 + BACOVA_03678 0.45 -0.7
5,045 + BACOVA_03678 0.46 +1.6
5,046 - BACOVA_03678 0.46 +1.1
5,054 - BACOVA_03678 0.46 +1.0
5,074 + BACOVA_03678 0.48 -0.8
5,098 + BACOVA_03678 0.49 +1.0
5,098 + BACOVA_03678 0.49 +0.5
5,193 + BACOVA_03678 0.56 +0.2
5,326 + BACOVA_03678 0.65 -0.4
5,379 - BACOVA_03678 0.69 +0.8
5,399 + BACOVA_03678 0.70 +0.1
5,433 - BACOVA_03678 0.72 +1.2
5,486 + BACOVA_03678 0.76 +0.6
5,496 - BACOVA_03678 0.77 +0.6
5,496 - BACOVA_03678 0.77 +0.2
5,509 + BACOVA_03678 0.78 +0.7
5,520 + BACOVA_03678 0.78 +0.9
5,520 + BACOVA_03678 0.78 +0.4
5,552 - BACOVA_03678 0.81 +0.4
5,569 + BACOVA_03678 0.82 -1.7
5,598 - BACOVA_03678 0.84 -0.7
5,621 + BACOVA_03678 0.85 +1.2
5,642 + BACOVA_03678 0.87 +0.3
5,643 - BACOVA_03678 0.87 +0.4
5,677 + BACOVA_03678 0.89 -0.2
5,677 + BACOVA_03678 0.89 +1.2
5,678 - BACOVA_03678 0.89 +1.7
5,678 - BACOVA_03678 0.89 -0.8
5,708 + +1.0
5,729 + +0.7
5,781 - +0.5
5,814 - +0.1
5,844 + -1.0
5,844 + -0.4
5,845 - +1.2
5,867 + +0.1
5,900 - -0.0
5,900 - +0.5
5,906 + +0.0
5,979 + BACOVA_03679 0.15 +0.3
5,980 - BACOVA_03679 0.15 +0.1
6,021 - BACOVA_03679 0.20 -1.1
6,022 + BACOVA_03679 0.20 +0.6
6,022 + BACOVA_03679 0.20 +0.4
6,023 - BACOVA_03679 0.20 -0.0
6,023 - BACOVA_03679 0.20 +0.8
6,023 - BACOVA_03679 0.20 +0.9
6,023 - BACOVA_03679 0.20 +0.0
6,023 - BACOVA_03679 0.20 +0.5
6,023 - BACOVA_03679 0.20 -0.4
6,023 - BACOVA_03679 0.20 +0.4
6,107 + BACOVA_03679 0.29 +0.2
6,118 - BACOVA_03679 0.30 +2.4
6,118 - BACOVA_03679 0.30 +1.9
6,192 + BACOVA_03679 0.38 -0.8
6,218 + BACOVA_03679 0.41 -0.1
6,218 + BACOVA_03679 0.41 +0.5
6,224 + BACOVA_03679 0.42 -0.1
6,224 + BACOVA_03679 0.42 -0.2
6,225 - BACOVA_03679 0.42 +0.2
6,229 + BACOVA_03679 0.42 +0.5
6,274 + BACOVA_03679 0.47 +2.6
6,274 + BACOVA_03679 0.47 +1.1
6,338 + BACOVA_03679 0.54 -0.1
6,338 + BACOVA_03679 0.54 +0.2
6,339 - BACOVA_03679 0.54 +1.0
6,364 + BACOVA_03679 0.57 -0.3
6,392 + BACOVA_03679 0.60 +0.6
6,485 - BACOVA_03679 0.70 +1.0
6,536 + BACOVA_03679 0.75 -0.5
6,539 - BACOVA_03679 0.75 -0.4
6,611 - BACOVA_03679 0.83 +0.0
6,611 - BACOVA_03679 0.83 -1.0
6,681 - +0.8
6,746 + +1.1
6,750 - -0.2
6,753 + +1.1
6,753 + -0.9
6,754 - +1.0
6,767 + +0.2
6,773 + -1.2
6,773 + +1.0
6,787 + +1.0
6,843 + +0.5
6,919 + BACOVA_03680 0.11 -0.4
6,919 + BACOVA_03680 0.11 -0.7
6,919 + BACOVA_03680 0.11 +1.4
6,973 + BACOVA_03680 0.15 -1.9
7,033 + BACOVA_03680 0.20 -0.9
7,041 - BACOVA_03680 0.21 +0.0
7,080 - BACOVA_03680 0.24 +2.0
7,091 + BACOVA_03680 0.25 +1.3
7,091 + BACOVA_03680 0.25 +0.1
7,192 - BACOVA_03680 0.33 -0.4
7,192 - BACOVA_03680 0.33 +1.8
7,212 + BACOVA_03680 0.34 +1.2
7,212 + BACOVA_03680 0.34 -0.0
7,213 - BACOVA_03680 0.35 +0.4
7,268 + BACOVA_03680 0.39 -0.0
7,279 + BACOVA_03680 0.40 +1.0
7,279 + BACOVA_03680 0.40 -0.8
7,401 + BACOVA_03680 0.50 -1.8
7,435 - BACOVA_03680 0.53 +0.8
7,506 + BACOVA_03680 0.58 +1.2
7,507 - BACOVA_03680 0.59 +0.6
7,566 + BACOVA_03680 0.63 +0.7
7,566 + BACOVA_03680 0.63 +0.0
7,567 - BACOVA_03680 0.63 +0.8
7,573 + BACOVA_03680 0.64 +0.7
7,573 + BACOVA_03680 0.64 +0.0
7,578 - BACOVA_03680 0.64 -0.5
7,578 - BACOVA_03680 0.64 +1.2

Or see this region's nucleotide sequence