Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03556 and BACOVA_03557 are separated by 15 nucleotides BACOVA_03557 and BACOVA_03558 are separated by 24 nucleotides
BACOVA_03556: BACOVA_03556 - TonB-linked outer membrane protein, SusC/RagA family, at 328,985 to 332,308
_03556
BACOVA_03557: BACOVA_03557 - hypothetical protein, at 332,324 to 333,964
_03557
BACOVA_03558: BACOVA_03558 - hypothetical protein, at 333,989 to 335,119
_03558
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.324 kb on + strand, within BACOVA_03556 at 331.334 kb on + strand, within BACOVA_03556 at 331.348 kb on - strand, within BACOVA_03556 at 331.372 kb on - strand, within BACOVA_03556 at 331.388 kb on + strand, within BACOVA_03556 at 331.388 kb on + strand, within BACOVA_03556 at 331.389 kb on - strand, within BACOVA_03556 at 331.392 kb on - strand, within BACOVA_03556 at 331.400 kb on - strand, within BACOVA_03556 at 331.403 kb on - strand, within BACOVA_03556 at 331.403 kb on - strand, within BACOVA_03556 at 331.406 kb on + strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.461 kb on - strand, within BACOVA_03556 at 331.475 kb on - strand, within BACOVA_03556 at 331.506 kb on + strand, within BACOVA_03556 at 331.507 kb on - strand, within BACOVA_03556 at 331.512 kb on - strand, within BACOVA_03556 at 331.526 kb on - strand, within BACOVA_03556 at 331.537 kb on - strand, within BACOVA_03556 at 331.570 kb on + strand, within BACOVA_03556 at 331.571 kb on - strand, within BACOVA_03556 at 331.571 kb on - strand, within BACOVA_03556 at 331.572 kb on + strand, within BACOVA_03556 at 331.573 kb on - strand, within BACOVA_03556 at 331.601 kb on + strand, within BACOVA_03556 at 331.602 kb on - strand, within BACOVA_03556 at 331.607 kb on - strand, within BACOVA_03556 at 331.630 kb on + strand, within BACOVA_03556 at 331.696 kb on + strand, within BACOVA_03556 at 331.700 kb on + strand, within BACOVA_03556 at 331.701 kb on - strand, within BACOVA_03556 at 331.736 kb on + strand, within BACOVA_03556 at 331.974 kb on + strand, within BACOVA_03556 at 331.975 kb on - strand, within BACOVA_03556 at 332.013 kb on - strand at 332.057 kb on + strand at 332.057 kb on + strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.062 kb on - strand at 332.062 kb on - strand at 332.063 kb on + strand at 332.101 kb on + strand at 332.101 kb on + strand at 332.105 kb on + strand at 332.106 kb on - strand at 332.106 kb on - strand at 332.110 kb on + strand at 332.111 kb on - strand at 332.111 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.119 kb on + strand at 332.120 kb on - strand at 332.120 kb on - strand at 332.150 kb on - strand at 332.164 kb on - strand at 332.186 kb on + strand at 332.228 kb on - strand at 332.235 kb on - strand at 332.275 kb on + strand at 332.276 kb on - strand at 332.306 kb on + strand at 332.309 kb on + strand at 332.309 kb on + strand at 332.310 kb on - strand at 332.320 kb on + strand at 332.350 kb on - strand at 332.361 kb on + strand at 332.377 kb on - strand at 332.408 kb on - strand at 332.473 kb on + strand at 332.474 kb on - strand at 332.474 kb on - strand at 332.480 kb on - strand at 332.480 kb on - strand at 332.530 kb on + strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.552 kb on + strand, within BACOVA_03557 at 332.553 kb on - strand, within BACOVA_03557 at 332.620 kb on + strand, within BACOVA_03557 at 332.624 kb on - strand, within BACOVA_03557 at 332.629 kb on + strand, within BACOVA_03557 at 332.630 kb on - strand, within BACOVA_03557 at 332.630 kb on - strand, within BACOVA_03557 at 332.633 kb on - strand, within BACOVA_03557 at 332.639 kb on + strand, within BACOVA_03557 at 332.682 kb on - strand, within BACOVA_03557 at 332.683 kb on + strand, within BACOVA_03557 at 332.684 kb on - strand, within BACOVA_03557 at 332.718 kb on + strand, within BACOVA_03557 at 332.819 kb on + strand, within BACOVA_03557 at 332.820 kb on - strand, within BACOVA_03557 at 332.840 kb on - strand, within BACOVA_03557 at 332.840 kb on - strand, within BACOVA_03557 at 332.876 kb on + strand, within BACOVA_03557 at 332.876 kb on + strand, within BACOVA_03557 at 332.877 kb on - strand, within BACOVA_03557 at 332.879 kb on - strand, within BACOVA_03557 at 332.960 kb on + strand, within BACOVA_03557 at 332.961 kb on - strand, within BACOVA_03557 at 332.970 kb on + strand, within BACOVA_03557 at 332.972 kb on + strand, within BACOVA_03557 at 333.003 kb on - strand, within BACOVA_03557 at 333.076 kb on + strand, within BACOVA_03557 at 333.076 kb on + strand, within BACOVA_03557 at 333.098 kb on - strand, within BACOVA_03557 at 333.151 kb on + strand, within BACOVA_03557 at 333.191 kb on + strand, within BACOVA_03557 at 333.192 kb on - strand, within BACOVA_03557 at 333.192 kb on - strand, within BACOVA_03557 at 333.206 kb on - strand, within BACOVA_03557 at 333.228 kb on - strand, within BACOVA_03557 at 333.255 kb on + strand, within BACOVA_03557 at 333.284 kb on - strand, within BACOVA_03557 at 333.293 kb on + strand, within BACOVA_03557 at 333.293 kb on + strand, within BACOVA_03557 at 333.294 kb on - strand, within BACOVA_03557 at 333.324 kb on - strand, within BACOVA_03557 at 333.364 kb on + strand, within BACOVA_03557 at 333.365 kb on - strand, within BACOVA_03557 at 333.369 kb on - strand, within BACOVA_03557 at 333.410 kb on - strand, within BACOVA_03557 at 333.410 kb on - strand, within BACOVA_03557 at 333.413 kb on + strand, within BACOVA_03557 at 333.413 kb on + strand, within BACOVA_03557 at 333.498 kb on - strand, within BACOVA_03557 at 333.498 kb on - strand, within BACOVA_03557 at 333.500 kb on - strand, within BACOVA_03557 at 333.514 kb on + strand, within BACOVA_03557 at 333.514 kb on + strand, within BACOVA_03557 at 333.557 kb on + strand, within BACOVA_03557 at 333.558 kb on - strand, within BACOVA_03557 at 333.560 kb on - strand, within BACOVA_03557 at 333.588 kb on - strand, within BACOVA_03557 at 333.588 kb on - strand, within BACOVA_03557 at 333.640 kb on + strand, within BACOVA_03557 at 333.640 kb on + strand, within BACOVA_03557 at 333.776 kb on - strand, within BACOVA_03557 at 333.776 kb on - strand, within BACOVA_03557 at 333.879 kb on - strand at 333.926 kb on - strand at 333.963 kb on - strand at 333.968 kb on - strand at 333.968 kb on - strand at 333.974 kb on - strand at 334.023 kb on - strand at 334.024 kb on + strand at 334.025 kb on - strand at 334.050 kb on + strand at 334.050 kb on + strand at 334.051 kb on - strand at 334.076 kb on - strand at 334.091 kb on - strand at 334.091 kb on - strand at 334.091 kb on - strand at 334.093 kb on - strand at 334.133 kb on + strand, within BACOVA_03558 at 334.133 kb on + strand, within BACOVA_03558 at 334.136 kb on + strand, within BACOVA_03558 at 334.137 kb on - strand, within BACOVA_03558 at 334.137 kb on - strand, within BACOVA_03558 at 334.155 kb on - strand, within BACOVA_03558 at 334.156 kb on + strand, within BACOVA_03558 at 334.175 kb on + strand, within BACOVA_03558 at 334.202 kb on + strand, within BACOVA_03558 at 334.203 kb on - strand, within BACOVA_03558 at 334.241 kb on + strand, within BACOVA_03558 at 334.241 kb on + strand, within BACOVA_03558 at 334.242 kb on - strand, within BACOVA_03558 at 334.252 kb on + strand, within BACOVA_03558 at 334.265 kb on - strand, within BACOVA_03558 at 334.424 kb on + strand, within BACOVA_03558 at 334.548 kb on - strand, within BACOVA_03558 at 334.621 kb on - strand, within BACOVA_03558 at 334.621 kb on - strand, within BACOVA_03558 at 334.713 kb on - strand, within BACOVA_03558 at 334.762 kb on + strand, within BACOVA_03558 at 334.779 kb on - strand, within BACOVA_03558 at 334.787 kb on - strand, within BACOVA_03558 at 334.805 kb on + strand, within BACOVA_03558 at 334.805 kb on + strand, within BACOVA_03558 at 334.910 kb on + strand, within BACOVA_03558 at 334.910 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 331,324 + BACOVA_03556 0.70 +0.8 331,334 + BACOVA_03556 0.71 +0.5 331,348 - BACOVA_03556 0.71 +1.3 331,372 - BACOVA_03556 0.72 +0.4 331,388 + BACOVA_03556 0.72 -2.0 331,388 + BACOVA_03556 0.72 -1.1 331,389 - BACOVA_03556 0.72 -0.3 331,392 - BACOVA_03556 0.72 -0.2 331,400 - BACOVA_03556 0.73 +0.5 331,403 - BACOVA_03556 0.73 -0.6 331,403 - BACOVA_03556 0.73 -0.1 331,406 + BACOVA_03556 0.73 -0.9 331,407 - BACOVA_03556 0.73 +1.2 331,407 - BACOVA_03556 0.73 -0.9 331,407 - BACOVA_03556 0.73 -0.2 331,407 - BACOVA_03556 0.73 +1.1 331,461 - BACOVA_03556 0.74 +0.5 331,475 - BACOVA_03556 0.75 -2.0 331,506 + BACOVA_03556 0.76 +0.6 331,507 - BACOVA_03556 0.76 -0.5 331,512 - BACOVA_03556 0.76 -0.5 331,526 - BACOVA_03556 0.76 +0.4 331,537 - BACOVA_03556 0.77 +0.5 331,570 + BACOVA_03556 0.78 +0.2 331,571 - BACOVA_03556 0.78 +1.4 331,571 - BACOVA_03556 0.78 +0.4 331,572 + BACOVA_03556 0.78 -1.3 331,573 - BACOVA_03556 0.78 -1.8 331,601 + BACOVA_03556 0.79 +0.3 331,602 - BACOVA_03556 0.79 +0.7 331,607 - BACOVA_03556 0.79 +0.2 331,630 + BACOVA_03556 0.80 -0.5 331,696 + BACOVA_03556 0.82 -0.8 331,700 + BACOVA_03556 0.82 +1.8 331,701 - BACOVA_03556 0.82 -0.6 331,736 + BACOVA_03556 0.83 +0.6 331,974 + BACOVA_03556 0.90 -0.7 331,975 - BACOVA_03556 0.90 +0.3 332,013 - -1.7 332,057 + -0.2 332,057 + -0.2 332,058 - +0.6 332,058 - -0.1 332,058 - +0.4 332,058 - -2.3 332,062 - +0.6 332,062 - +0.1 332,063 + -0.8 332,101 + -1.2 332,101 + +0.2 332,105 + +0.1 332,106 - -0.2 332,106 - +0.1 332,110 + -0.0 332,111 - -0.2 332,111 - +0.8 332,117 - +0.3 332,117 - -1.3 332,117 - +1.0 332,119 + -2.3 332,120 - +0.0 332,120 - +0.0 332,150 - -1.3 332,164 - +0.8 332,186 + -0.4 332,228 - +0.4 332,235 - +0.7 332,275 + +0.4 332,276 - +0.7 332,306 + -0.8 332,309 + +1.8 332,309 + -1.5 332,310 - +0.8 332,320 + -1.8 332,350 - +0.5 332,361 + +0.7 332,377 - -0.8 332,408 - -0.6 332,473 + +0.3 332,474 - -0.7 332,474 - -0.1 332,480 - -0.5 332,480 - -1.3 332,530 + BACOVA_03557 0.13 -0.4 332,548 - BACOVA_03557 0.14 -1.3 332,548 - BACOVA_03557 0.14 +0.1 332,548 - BACOVA_03557 0.14 -0.8 332,552 + BACOVA_03557 0.14 -1.2 332,553 - BACOVA_03557 0.14 -0.4 332,620 + BACOVA_03557 0.18 -1.1 332,624 - BACOVA_03557 0.18 -0.0 332,629 + BACOVA_03557 0.19 -1.2 332,630 - BACOVA_03557 0.19 +0.5 332,630 - BACOVA_03557 0.19 +0.4 332,633 - BACOVA_03557 0.19 +0.3 332,639 + BACOVA_03557 0.19 +0.7 332,682 - BACOVA_03557 0.22 +0.1 332,683 + BACOVA_03557 0.22 -0.1 332,684 - BACOVA_03557 0.22 +0.4 332,718 + BACOVA_03557 0.24 +0.7 332,819 + BACOVA_03557 0.30 +0.6 332,820 - BACOVA_03557 0.30 +0.5 332,840 - BACOVA_03557 0.31 +0.6 332,840 - BACOVA_03557 0.31 -0.9 332,876 + BACOVA_03557 0.34 +0.5 332,876 + BACOVA_03557 0.34 +0.2 332,877 - BACOVA_03557 0.34 +0.5 332,879 - BACOVA_03557 0.34 +0.4 332,960 + BACOVA_03557 0.39 +0.1 332,961 - BACOVA_03557 0.39 +0.9 332,970 + BACOVA_03557 0.39 +0.0 332,972 + BACOVA_03557 0.39 +1.6 333,003 - BACOVA_03557 0.41 -2.0 333,076 + BACOVA_03557 0.46 +1.5 333,076 + BACOVA_03557 0.46 +0.1 333,098 - BACOVA_03557 0.47 +0.2 333,151 + BACOVA_03557 0.50 +0.8 333,191 + BACOVA_03557 0.53 +0.4 333,192 - BACOVA_03557 0.53 +0.5 333,192 - BACOVA_03557 0.53 -0.5 333,206 - BACOVA_03557 0.54 +0.4 333,228 - BACOVA_03557 0.55 -2.6 333,255 + BACOVA_03557 0.57 -2.6 333,284 - BACOVA_03557 0.59 +0.3 333,293 + BACOVA_03557 0.59 +0.6 333,293 + BACOVA_03557 0.59 -0.8 333,294 - BACOVA_03557 0.59 -0.6 333,324 - BACOVA_03557 0.61 -0.0 333,364 + BACOVA_03557 0.63 -0.3 333,365 - BACOVA_03557 0.63 +0.9 333,369 - BACOVA_03557 0.64 +0.4 333,410 - BACOVA_03557 0.66 -0.4 333,410 - BACOVA_03557 0.66 +1.1 333,413 + BACOVA_03557 0.66 -1.0 333,413 + BACOVA_03557 0.66 +1.8 333,498 - BACOVA_03557 0.72 +0.6 333,498 - BACOVA_03557 0.72 -0.6 333,500 - BACOVA_03557 0.72 -0.1 333,514 + BACOVA_03557 0.73 -1.1 333,514 + BACOVA_03557 0.73 -0.6 333,557 + BACOVA_03557 0.75 +0.7 333,558 - BACOVA_03557 0.75 +0.3 333,560 - BACOVA_03557 0.75 -0.6 333,588 - BACOVA_03557 0.77 +0.7 333,588 - BACOVA_03557 0.77 +0.4 333,640 + BACOVA_03557 0.80 +0.9 333,640 + BACOVA_03557 0.80 -2.3 333,776 - BACOVA_03557 0.88 -0.3 333,776 - BACOVA_03557 0.88 -0.5 333,879 - -1.0 333,926 - -0.9 333,963 - +0.4 333,968 - -1.0 333,968 - +0.1 333,974 - -0.7 334,023 - +0.7 334,024 + -0.6 334,025 - +1.2 334,050 + +0.1 334,050 + -0.2 334,051 - +0.2 334,076 - +0.0 334,091 - -1.1 334,091 - +0.8 334,091 - -1.4 334,093 - -0.3 334,133 + BACOVA_03558 0.13 +0.1 334,133 + BACOVA_03558 0.13 -0.4 334,136 + BACOVA_03558 0.13 +1.4 334,137 - BACOVA_03558 0.13 -0.2 334,137 - BACOVA_03558 0.13 -0.7 334,155 - BACOVA_03558 0.15 -0.7 334,156 + BACOVA_03558 0.15 +0.4 334,175 + BACOVA_03558 0.16 -0.8 334,202 + BACOVA_03558 0.19 -0.4 334,203 - BACOVA_03558 0.19 +0.2 334,241 + BACOVA_03558 0.22 -0.8 334,241 + BACOVA_03558 0.22 -0.9 334,242 - BACOVA_03558 0.22 -0.6 334,252 + BACOVA_03558 0.23 +0.7 334,265 - BACOVA_03558 0.24 -1.5 334,424 + BACOVA_03558 0.38 -2.5 334,548 - BACOVA_03558 0.49 +0.5 334,621 - BACOVA_03558 0.56 +0.3 334,621 - BACOVA_03558 0.56 +0.4 334,713 - BACOVA_03558 0.64 -1.9 334,762 + BACOVA_03558 0.68 -1.8 334,779 - BACOVA_03558 0.70 -0.8 334,787 - BACOVA_03558 0.71 +0.0 334,805 + BACOVA_03558 0.72 -0.2 334,805 + BACOVA_03558 0.72 +0.8 334,910 + BACOVA_03558 0.81 +0.7 334,910 + BACOVA_03558 0.81 -0.4 334,951 + BACOVA_03558 0.85 -1.0 334,951 + BACOVA_03558 0.85 +0.9 334,951 + BACOVA_03558 0.85 +0.1
Or see this region's nucleotide sequence