Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03490 and BACOVA_03491 are separated by 49 nucleotides BACOVA_03491 and BACOVA_03492 are separated by 216 nucleotides
BACOVA_03490: BACOVA_03490 - hypothetical protein, at 245,563 to 247,563
_03490
BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346
_03491
BACOVA_03492: BACOVA_03492 - glycosyl hydrolase, family 43, at 249,563 to 250,609
_03492
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 246.655 kb on - strand, within BACOVA_03490 at 246.656 kb on - strand, within BACOVA_03490 at 246.699 kb on + strand, within BACOVA_03490 at 246.723 kb on + strand, within BACOVA_03490 at 246.788 kb on - strand, within BACOVA_03490 at 246.788 kb on - strand, within BACOVA_03490 at 246.789 kb on + strand, within BACOVA_03490 at 246.790 kb on - strand, within BACOVA_03490 at 246.792 kb on + strand, within BACOVA_03490 at 246.793 kb on - strand, within BACOVA_03490 at 246.919 kb on - strand, within BACOVA_03490 at 246.931 kb on + strand, within BACOVA_03490 at 246.931 kb on + strand, within BACOVA_03490 at 246.936 kb on + strand, within BACOVA_03490 at 246.937 kb on - strand, within BACOVA_03490 at 247.033 kb on + strand, within BACOVA_03490 at 247.034 kb on - strand, within BACOVA_03490 at 247.152 kb on + strand, within BACOVA_03490 at 247.153 kb on - strand, within BACOVA_03490 at 247.153 kb on - strand, within BACOVA_03490 at 247.196 kb on - strand, within BACOVA_03490 at 247.239 kb on + strand, within BACOVA_03490 at 247.239 kb on + strand, within BACOVA_03490 at 247.248 kb on + strand, within BACOVA_03490 at 247.258 kb on - strand, within BACOVA_03490 at 247.324 kb on + strand, within BACOVA_03490 at 247.326 kb on + strand, within BACOVA_03490 at 247.326 kb on + strand, within BACOVA_03490 at 247.327 kb on - strand, within BACOVA_03490 at 247.327 kb on - strand, within BACOVA_03490 at 247.327 kb on - strand, within BACOVA_03490 at 247.327 kb on - strand, within BACOVA_03490 at 247.327 kb on - strand, within BACOVA_03490 at 247.332 kb on - strand, within BACOVA_03490 at 247.355 kb on + strand, within BACOVA_03490 at 247.377 kb on + strand at 247.409 kb on + strand at 247.412 kb on - strand at 247.454 kb on - strand at 247.503 kb on + strand at 247.562 kb on - strand at 247.603 kb on + strand at 247.604 kb on - strand at 247.604 kb on - strand at 247.649 kb on + strand at 247.649 kb on + strand at 247.653 kb on + strand at 247.653 kb on + strand at 247.654 kb on - strand at 247.654 kb on - strand at 247.654 kb on - strand at 247.657 kb on + strand at 247.793 kb on - strand, within BACOVA_03491 at 247.800 kb on - strand, within BACOVA_03491 at 247.800 kb on - strand, within BACOVA_03491 at 247.800 kb on - strand, within BACOVA_03491 at 247.801 kb on + strand, within BACOVA_03491 at 247.801 kb on + strand, within BACOVA_03491 at 247.801 kb on + strand, within BACOVA_03491 at 247.826 kb on - strand, within BACOVA_03491 at 247.830 kb on + strand, within BACOVA_03491 at 247.831 kb on - strand, within BACOVA_03491 at 247.844 kb on + strand, within BACOVA_03491 at 247.875 kb on + strand, within BACOVA_03491 at 247.876 kb on - strand, within BACOVA_03491 at 247.876 kb on - strand, within BACOVA_03491 at 247.929 kb on + strand, within BACOVA_03491 at 247.948 kb on + strand, within BACOVA_03491 at 248.017 kb on + strand, within BACOVA_03491 at 248.017 kb on + strand, within BACOVA_03491 at 248.018 kb on - strand, within BACOVA_03491 at 248.020 kb on + strand, within BACOVA_03491 at 248.021 kb on - strand, within BACOVA_03491 at 248.108 kb on - strand, within BACOVA_03491 at 248.111 kb on + strand, within BACOVA_03491 at 248.112 kb on - strand, within BACOVA_03491 at 248.112 kb on - strand, within BACOVA_03491 at 248.146 kb on + strand, within BACOVA_03491 at 248.190 kb on + strand, within BACOVA_03491 at 248.191 kb on - strand, within BACOVA_03491 at 248.191 kb on - strand, within BACOVA_03491 at 248.214 kb on + strand, within BACOVA_03491 at 248.247 kb on - strand, within BACOVA_03491 at 248.267 kb on - strand, within BACOVA_03491 at 248.282 kb on + strand, within BACOVA_03491 at 248.330 kb on - strand, within BACOVA_03491 at 248.387 kb on - strand, within BACOVA_03491 at 248.407 kb on + strand, within BACOVA_03491 at 248.493 kb on + strand, within BACOVA_03491 at 248.532 kb on + strand, within BACOVA_03491 at 248.532 kb on + strand, within BACOVA_03491 at 248.532 kb on + strand, within BACOVA_03491 at 248.532 kb on + strand, within BACOVA_03491 at 248.533 kb on - strand, within BACOVA_03491 at 248.564 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.571 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.696 kb on - strand, within BACOVA_03491 at 248.703 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.732 kb on + strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.737 kb on + strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.745 kb on - strand, within BACOVA_03491 at 248.786 kb on - strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.895 kb on - strand, within BACOVA_03491 at 248.898 kb on - strand, within BACOVA_03491 at 248.916 kb on + strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.120 kb on + strand, within BACOVA_03491 at 249.153 kb on - strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.167 kb on + strand, within BACOVA_03491 at 249.168 kb on - strand, within BACOVA_03491 at 249.169 kb on + strand, within BACOVA_03491 at 249.239 kb on + strand at 249.240 kb on - strand at 249.241 kb on + strand at 249.254 kb on + strand at 249.255 kb on - strand at 249.283 kb on + strand at 249.297 kb on + strand at 249.298 kb on - strand at 249.298 kb on - strand at 249.303 kb on + strand at 249.305 kb on + strand at 249.305 kb on + strand at 249.306 kb on - strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.404 kb on - strand at 249.407 kb on - strand at 249.408 kb on + strand at 249.409 kb on - strand at 249.409 kb on - strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.452 kb on - strand at 249.456 kb on + strand at 249.456 kb on + strand at 249.462 kb on + strand at 249.482 kb on + strand at 249.499 kb on - strand at 249.500 kb on + strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.523 kb on + strand at 249.536 kb on - strand at 249.556 kb on + strand at 249.568 kb on + strand at 249.593 kb on - strand at 249.599 kb on - strand at 249.601 kb on - strand at 249.603 kb on + strand at 249.604 kb on - strand at 249.606 kb on + strand at 249.619 kb on + strand at 249.620 kb on - strand at 249.627 kb on + strand at 249.637 kb on - strand at 249.637 kb on - strand at 249.656 kb on + strand at 249.657 kb on - strand at 249.659 kb on - strand at 249.732 kb on + strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.735 kb on - strand, within BACOVA_03492 at 249.739 kb on + strand, within BACOVA_03492 at 249.749 kb on + strand, within BACOVA_03492 at 249.750 kb on - strand, within BACOVA_03492 at 249.752 kb on + strand, within BACOVA_03492 at 249.758 kb on + strand, within BACOVA_03492 at 249.759 kb on - strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.803 kb on - strand, within BACOVA_03492 at 249.820 kb on + strand, within BACOVA_03492 at 249.837 kb on + strand, within BACOVA_03492 at 249.846 kb on - strand, within BACOVA_03492 at 249.940 kb on - strand, within BACOVA_03492 at 249.965 kb on - strand, within BACOVA_03492 at 249.987 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.021 kb on + strand, within BACOVA_03492 at 250.148 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.185 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.231 kb on + strand, within BACOVA_03492 at 250.276 kb on + strand, within BACOVA_03492 at 250.277 kb on - strand, within BACOVA_03492 at 250.282 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.297 kb on + strand, within BACOVA_03492 at 250.303 kb on - strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 246,655 - BACOVA_03490 0.55 -0.8 246,656 - BACOVA_03490 0.55 +0.7 246,699 + BACOVA_03490 0.57 -0.3 246,723 + BACOVA_03490 0.58 +2.8 246,788 - BACOVA_03490 0.61 -0.9 246,788 - BACOVA_03490 0.61 +0.1 246,789 + BACOVA_03490 0.61 +1.3 246,790 - BACOVA_03490 0.61 +0.5 246,792 + BACOVA_03490 0.61 -0.9 246,793 - BACOVA_03490 0.61 -0.3 246,919 - BACOVA_03490 0.68 +0.0 246,931 + BACOVA_03490 0.68 -1.6 246,931 + BACOVA_03490 0.68 -0.8 246,936 + BACOVA_03490 0.69 +0.6 246,937 - BACOVA_03490 0.69 -0.1 247,033 + BACOVA_03490 0.73 +0.1 247,034 - BACOVA_03490 0.74 -0.6 247,152 + BACOVA_03490 0.79 +0.5 247,153 - BACOVA_03490 0.79 +0.2 247,153 - BACOVA_03490 0.79 +0.2 247,196 - BACOVA_03490 0.82 +0.3 247,239 + BACOVA_03490 0.84 +1.6 247,239 + BACOVA_03490 0.84 -1.3 247,248 + BACOVA_03490 0.84 +1.0 247,258 - BACOVA_03490 0.85 +0.0 247,324 + BACOVA_03490 0.88 +0.1 247,326 + BACOVA_03490 0.88 -0.2 247,326 + BACOVA_03490 0.88 +0.5 247,327 - BACOVA_03490 0.88 -0.9 247,327 - BACOVA_03490 0.88 -1.4 247,327 - BACOVA_03490 0.88 +0.5 247,327 - BACOVA_03490 0.88 +1.0 247,327 - BACOVA_03490 0.88 +0.1 247,332 - BACOVA_03490 0.88 +0.0 247,355 + BACOVA_03490 0.90 -0.6 247,377 + -1.3 247,409 + +0.6 247,412 - -1.1 247,454 - +0.3 247,503 + -0.7 247,562 - -0.9 247,603 + -0.5 247,604 - +0.7 247,604 - -0.6 247,649 + -0.5 247,649 + +0.8 247,653 + -0.6 247,653 + -1.1 247,654 - +0.3 247,654 - -0.4 247,654 - -1.8 247,657 + +0.3 247,793 - BACOVA_03491 0.10 +1.0 247,800 - BACOVA_03491 0.11 -1.0 247,800 - BACOVA_03491 0.11 +0.0 247,800 - BACOVA_03491 0.11 +0.2 247,801 + BACOVA_03491 0.11 -0.6 247,801 + BACOVA_03491 0.11 +0.2 247,801 + BACOVA_03491 0.11 +1.4 247,826 - BACOVA_03491 0.12 +0.9 247,830 + BACOVA_03491 0.13 -0.3 247,831 - BACOVA_03491 0.13 -0.2 247,844 + BACOVA_03491 0.13 -0.3 247,875 + BACOVA_03491 0.15 +0.3 247,876 - BACOVA_03491 0.15 -2.4 247,876 - BACOVA_03491 0.15 -0.1 247,929 + BACOVA_03491 0.18 +0.2 247,948 + BACOVA_03491 0.19 -1.6 248,017 + BACOVA_03491 0.23 -0.7 248,017 + BACOVA_03491 0.23 -1.9 248,018 - BACOVA_03491 0.23 -0.0 248,020 + BACOVA_03491 0.23 +0.4 248,021 - BACOVA_03491 0.24 +0.3 248,108 - BACOVA_03491 0.29 -0.2 248,111 + BACOVA_03491 0.29 -0.6 248,112 - BACOVA_03491 0.29 -0.5 248,112 - BACOVA_03491 0.29 -0.8 248,146 + BACOVA_03491 0.31 +0.4 248,190 + BACOVA_03491 0.33 +0.0 248,191 - BACOVA_03491 0.33 +0.1 248,191 - BACOVA_03491 0.33 -0.3 248,214 + BACOVA_03491 0.35 -0.2 248,247 - BACOVA_03491 0.37 +0.6 248,267 - BACOVA_03491 0.38 +0.5 248,282 + BACOVA_03491 0.39 -0.2 248,330 - BACOVA_03491 0.41 +0.0 248,387 - BACOVA_03491 0.45 -0.2 248,407 + BACOVA_03491 0.46 +0.8 248,493 + BACOVA_03491 0.51 -1.2 248,532 + BACOVA_03491 0.53 -1.1 248,532 + BACOVA_03491 0.53 +0.8 248,532 + BACOVA_03491 0.53 -0.1 248,532 + BACOVA_03491 0.53 -1.9 248,533 - BACOVA_03491 0.53 -1.0 248,564 + BACOVA_03491 0.55 +0.7 248,567 + BACOVA_03491 0.55 +1.4 248,567 + BACOVA_03491 0.55 -0.1 248,571 - BACOVA_03491 0.55 -0.3 248,661 - BACOVA_03491 0.60 +0.1 248,661 - BACOVA_03491 0.60 -2.5 248,661 - BACOVA_03491 0.60 -0.7 248,696 - BACOVA_03491 0.62 +1.4 248,703 + BACOVA_03491 0.63 +1.5 248,705 + BACOVA_03491 0.63 +1.0 248,705 + BACOVA_03491 0.63 -1.1 248,705 + BACOVA_03491 0.63 +0.6 248,706 - BACOVA_03491 0.63 +0.4 248,706 - BACOVA_03491 0.63 -1.0 248,706 - BACOVA_03491 0.63 +0.7 248,706 - BACOVA_03491 0.63 +0.6 248,732 + BACOVA_03491 0.65 +0.8 248,733 - BACOVA_03491 0.65 -0.3 248,733 - BACOVA_03491 0.65 +0.2 248,737 + BACOVA_03491 0.65 +0.8 248,738 - BACOVA_03491 0.65 -0.2 248,738 - BACOVA_03491 0.65 -0.7 248,745 - BACOVA_03491 0.65 +1.0 248,786 - BACOVA_03491 0.68 +0.8 248,837 + BACOVA_03491 0.71 +0.5 248,837 + BACOVA_03491 0.71 +0.4 248,839 + BACOVA_03491 0.71 +0.7 248,839 + BACOVA_03491 0.71 -2.8 248,840 - BACOVA_03491 0.71 -0.4 248,840 - BACOVA_03491 0.71 +0.2 248,895 - BACOVA_03491 0.74 +0.4 248,898 - BACOVA_03491 0.74 -0.6 248,916 + BACOVA_03491 0.75 -0.4 248,934 - BACOVA_03491 0.76 -0.8 248,934 - BACOVA_03491 0.76 +0.4 249,059 - BACOVA_03491 0.83 +0.5 249,059 - BACOVA_03491 0.83 -0.1 249,117 - BACOVA_03491 0.87 +0.5 249,117 - BACOVA_03491 0.87 +0.0 249,120 + BACOVA_03491 0.87 -2.2 249,153 - BACOVA_03491 0.89 +0.8 249,165 + BACOVA_03491 0.90 -1.6 249,165 + BACOVA_03491 0.90 +0.1 249,165 + BACOVA_03491 0.90 -0.3 249,165 + BACOVA_03491 0.90 -1.5 249,166 - BACOVA_03491 0.90 +0.9 249,166 - BACOVA_03491 0.90 -1.4 249,166 - BACOVA_03491 0.90 +0.7 249,166 - BACOVA_03491 0.90 +0.5 249,167 + BACOVA_03491 0.90 +0.3 249,168 - BACOVA_03491 0.90 +0.2 249,169 + BACOVA_03491 0.90 -0.2 249,239 + +0.2 249,240 - +0.2 249,241 + +0.5 249,254 + -0.8 249,255 - -0.1 249,283 + -0.4 249,297 + -1.3 249,298 - +0.7 249,298 - -0.7 249,303 + +0.1 249,305 + -1.2 249,305 + -1.4 249,306 - -2.3 249,307 + +0.6 249,307 + -0.8 249,307 + -1.0 249,307 + +0.2 249,404 - +0.1 249,407 - -0.9 249,408 + -0.8 249,409 - -0.2 249,409 - -0.3 249,448 + +0.9 249,448 + +0.7 249,448 + -0.4 249,452 - +0.2 249,456 + +1.8 249,456 + -0.1 249,462 + +0.2 249,482 + -0.5 249,499 - -1.1 249,500 + +0.2 249,501 - +0.5 249,501 - +0.7 249,501 - -1.5 249,523 + -2.3 249,536 - +0.4 249,556 + -1.0 249,568 + -1.1 249,593 - -1.7 249,599 - -0.3 249,601 - -0.8 249,603 + -0.5 249,604 - -0.5 249,606 + +0.8 249,619 + -0.7 249,620 - -2.1 249,627 + -2.1 249,637 - +0.5 249,637 - -0.5 249,656 + +1.5 249,657 - -0.5 249,659 - +0.8 249,732 + BACOVA_03492 0.16 +0.9 249,733 - BACOVA_03492 0.16 -0.3 249,733 - BACOVA_03492 0.16 -1.9 249,733 - BACOVA_03492 0.16 -0.9 249,735 - BACOVA_03492 0.16 +1.0 249,739 + BACOVA_03492 0.17 +0.4 249,749 + BACOVA_03492 0.18 -0.1 249,750 - BACOVA_03492 0.18 -0.6 249,752 + BACOVA_03492 0.18 +0.9 249,758 + BACOVA_03492 0.19 +0.5 249,759 - BACOVA_03492 0.19 -0.6 249,767 + BACOVA_03492 0.19 -0.4 249,767 + BACOVA_03492 0.19 +0.9 249,803 - BACOVA_03492 0.23 +0.5 249,820 + BACOVA_03492 0.25 +1.8 249,837 + BACOVA_03492 0.26 -1.1 249,846 - BACOVA_03492 0.27 -0.1 249,940 - BACOVA_03492 0.36 -1.7 249,965 - BACOVA_03492 0.38 -1.1 249,987 + BACOVA_03492 0.40 +1.5 250,016 + BACOVA_03492 0.43 -0.3 250,016 + BACOVA_03492 0.43 +0.7 250,016 + BACOVA_03492 0.43 +0.4 250,021 + BACOVA_03492 0.44 -0.5 250,148 + BACOVA_03492 0.56 +0.6 250,184 + BACOVA_03492 0.59 +0.6 250,184 + BACOVA_03492 0.59 -0.7 250,184 + BACOVA_03492 0.59 +0.4 250,184 + BACOVA_03492 0.59 +0.2 250,184 + BACOVA_03492 0.59 +0.4 250,185 - BACOVA_03492 0.59 +0.7 250,187 - BACOVA_03492 0.60 +0.3 250,187 - BACOVA_03492 0.60 +0.8 250,208 + BACOVA_03492 0.62 -0.1 250,208 + BACOVA_03492 0.62 -2.0 250,231 + BACOVA_03492 0.64 +0.6 250,276 + BACOVA_03492 0.68 +0.3 250,277 - BACOVA_03492 0.68 -1.1 250,282 + BACOVA_03492 0.69 -0.2 250,288 + BACOVA_03492 0.69 -1.7 250,288 + BACOVA_03492 0.69 +0.3 250,297 + BACOVA_03492 0.70 +1.2 250,303 - BACOVA_03492 0.71 +0.5 250,330 + BACOVA_03492 0.73 -0.4 250,330 + BACOVA_03492 0.73 +0.7
Or see this region's nucleotide sequence