Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02682 and BACOVA_02683 overlap by 4 nucleotides BACOVA_02683 and BACOVA_02684 are separated by 68 nucleotides BACOVA_02684 and BACOVA_02685 are separated by 30 nucleotides
BACOVA_02682: BACOVA_02682 - hypothetical protein, at 87,010 to 88,584
_02682
BACOVA_02683: BACOVA_02683 - hypothetical protein, at 88,581 to 89,588
_02683
BACOVA_02684: BACOVA_02684 - hypothetical protein, at 89,657 to 90,238
_02684
BACOVA_02685: BACOVA_02685 - hypothetical protein, at 90,269 to 92,146
_02685
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.603 kb on + strand, within BACOVA_02682 at 87.603 kb on + strand, within BACOVA_02682 at 87.603 kb on + strand, within BACOVA_02682 at 87.604 kb on - strand, within BACOVA_02682 at 87.654 kb on - strand, within BACOVA_02682 at 87.654 kb on - strand, within BACOVA_02682 at 87.657 kb on + strand, within BACOVA_02682 at 87.657 kb on + strand, within BACOVA_02682 at 87.658 kb on - strand, within BACOVA_02682 at 87.658 kb on - strand, within BACOVA_02682 at 87.658 kb on - strand, within BACOVA_02682 at 87.663 kb on + strand, within BACOVA_02682 at 87.678 kb on + strand, within BACOVA_02682 at 87.678 kb on + strand, within BACOVA_02682 at 87.679 kb on - strand, within BACOVA_02682 at 87.693 kb on - strand, within BACOVA_02682 at 87.695 kb on + strand, within BACOVA_02682 at 87.696 kb on - strand, within BACOVA_02682 at 87.701 kb on - strand, within BACOVA_02682 at 87.715 kb on - strand, within BACOVA_02682 at 87.727 kb on - strand, within BACOVA_02682 at 87.731 kb on + strand, within BACOVA_02682 at 87.731 kb on + strand, within BACOVA_02682 at 87.732 kb on - strand, within BACOVA_02682 at 87.732 kb on - strand, within BACOVA_02682 at 87.757 kb on + strand, within BACOVA_02682 at 87.790 kb on - strand, within BACOVA_02682 at 87.795 kb on + strand, within BACOVA_02682 at 87.795 kb on + strand, within BACOVA_02682 at 87.796 kb on - strand, within BACOVA_02682 at 87.796 kb on - strand, within BACOVA_02682 at 87.796 kb on - strand, within BACOVA_02682 at 87.828 kb on + strand, within BACOVA_02682 at 87.828 kb on + strand, within BACOVA_02682 at 87.852 kb on + strand, within BACOVA_02682 at 87.853 kb on - strand, within BACOVA_02682 at 87.862 kb on + strand, within BACOVA_02682 at 87.863 kb on - strand, within BACOVA_02682 at 87.863 kb on - strand, within BACOVA_02682 at 87.870 kb on + strand, within BACOVA_02682 at 87.902 kb on + strand, within BACOVA_02682 at 87.959 kb on + strand, within BACOVA_02682 at 87.960 kb on - strand, within BACOVA_02682 at 87.996 kb on + strand, within BACOVA_02682 at 87.997 kb on - strand, within BACOVA_02682 at 88.018 kb on + strand, within BACOVA_02682 at 88.019 kb on - strand, within BACOVA_02682 at 88.019 kb on - strand, within BACOVA_02682 at 88.062 kb on + strand, within BACOVA_02682 at 88.068 kb on - strand, within BACOVA_02682 at 88.081 kb on + strand, within BACOVA_02682 at 88.174 kb on + strand, within BACOVA_02682 at 88.286 kb on - strand, within BACOVA_02682 at 88.343 kb on - strand, within BACOVA_02682 at 88.366 kb on + strand, within BACOVA_02682 at 88.366 kb on + strand, within BACOVA_02682 at 88.367 kb on - strand, within BACOVA_02682 at 88.389 kb on - strand, within BACOVA_02682 at 88.503 kb on + strand at 88.507 kb on + strand at 88.508 kb on - strand at 88.554 kb on + strand at 88.554 kb on + strand at 88.554 kb on + strand at 88.554 kb on + strand at 88.555 kb on - strand at 88.555 kb on - strand at 88.555 kb on - strand at 88.561 kb on + strand at 88.564 kb on + strand at 88.591 kb on - strand at 88.595 kb on + strand at 88.634 kb on + strand at 88.634 kb on + strand at 88.635 kb on - strand at 88.638 kb on - strand at 88.644 kb on + strand at 88.645 kb on - strand at 88.656 kb on - strand at 88.727 kb on + strand, within BACOVA_02683 at 88.727 kb on + strand, within BACOVA_02683 at 88.728 kb on - strand, within BACOVA_02683 at 88.755 kb on + strand, within BACOVA_02683 at 88.774 kb on - strand, within BACOVA_02683 at 88.802 kb on + strand, within BACOVA_02683 at 88.802 kb on + strand, within BACOVA_02683 at 88.802 kb on + strand, within BACOVA_02683 at 88.803 kb on - strand, within BACOVA_02683 at 88.803 kb on - strand, within BACOVA_02683 at 88.803 kb on - strand, within BACOVA_02683 at 88.803 kb on - strand, within BACOVA_02683 at 88.803 kb on - strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.804 kb on + strand, within BACOVA_02683 at 88.805 kb on - strand, within BACOVA_02683 at 88.805 kb on - strand, within BACOVA_02683 at 88.877 kb on - strand, within BACOVA_02683 at 88.877 kb on - strand, within BACOVA_02683 at 88.921 kb on + strand, within BACOVA_02683 at 89.010 kb on + strand, within BACOVA_02683 at 89.099 kb on + strand, within BACOVA_02683 at 89.147 kb on + strand, within BACOVA_02683 at 89.148 kb on - strand, within BACOVA_02683 at 89.153 kb on + strand, within BACOVA_02683 at 89.153 kb on + strand, within BACOVA_02683 at 89.154 kb on - strand, within BACOVA_02683 at 89.239 kb on + strand, within BACOVA_02683 at 89.240 kb on - strand, within BACOVA_02683 at 89.243 kb on + strand, within BACOVA_02683 at 89.295 kb on + strand, within BACOVA_02683 at 89.314 kb on + strand, within BACOVA_02683 at 89.320 kb on + strand, within BACOVA_02683 at 89.380 kb on - strand, within BACOVA_02683 at 89.382 kb on - strand, within BACOVA_02683 at 89.382 kb on - strand, within BACOVA_02683 at 89.382 kb on - strand, within BACOVA_02683 at 89.388 kb on + strand, within BACOVA_02683 at 89.458 kb on + strand, within BACOVA_02683 at 89.470 kb on + strand, within BACOVA_02683 at 89.477 kb on + strand, within BACOVA_02683 at 89.478 kb on - strand, within BACOVA_02683 at 89.537 kb on + strand at 89.543 kb on + strand at 89.555 kb on + strand at 89.556 kb on - strand at 89.556 kb on - strand at 89.558 kb on - strand at 89.562 kb on + strand at 89.562 kb on + strand at 89.562 kb on + strand at 89.563 kb on - strand at 89.563 kb on - strand at 89.563 kb on - strand at 89.563 kb on - strand at 89.564 kb on + strand at 89.601 kb on + strand at 89.613 kb on + strand at 89.617 kb on - strand at 89.628 kb on + strand at 89.629 kb on - strand at 89.645 kb on + strand at 89.713 kb on - strand at 89.758 kb on + strand, within BACOVA_02684 at 89.758 kb on + strand, within BACOVA_02684 at 89.799 kb on + strand, within BACOVA_02684 at 89.799 kb on + strand, within BACOVA_02684 at 89.800 kb on - strand, within BACOVA_02684 at 89.800 kb on - strand, within BACOVA_02684 at 89.800 kb on - strand, within BACOVA_02684 at 89.801 kb on + strand, within BACOVA_02684 at 89.802 kb on - strand, within BACOVA_02684 at 89.809 kb on - strand, within BACOVA_02684 at 89.809 kb on - strand, within BACOVA_02684 at 89.855 kb on - strand, within BACOVA_02684 at 89.882 kb on - strand, within BACOVA_02684 at 89.934 kb on + strand, within BACOVA_02684 at 89.935 kb on - strand, within BACOVA_02684 at 89.946 kb on + strand, within BACOVA_02684 at 89.947 kb on - strand, within BACOVA_02684 at 89.947 kb on - strand, within BACOVA_02684 at 89.986 kb on + strand, within BACOVA_02684 at 90.037 kb on + strand, within BACOVA_02684 at 90.037 kb on + strand, within BACOVA_02684 at 90.038 kb on - strand, within BACOVA_02684 at 90.067 kb on + strand, within BACOVA_02684 at 90.253 kb on - strand at 90.259 kb on - strand at 90.259 kb on - strand at 90.263 kb on + strand at 90.263 kb on + strand at 90.299 kb on - strand at 90.343 kb on + strand at 90.347 kb on + strand at 90.348 kb on - strand at 90.348 kb on - strand at 90.464 kb on + strand, within BACOVA_02685 at 90.488 kb on + strand, within BACOVA_02685 at 90.517 kb on + strand, within BACOVA_02685 at 90.529 kb on + strand, within BACOVA_02685
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 87,603 + BACOVA_02682 0.38 -2.0 87,603 + BACOVA_02682 0.38 -0.2 87,603 + BACOVA_02682 0.38 +0.3 87,604 - BACOVA_02682 0.38 -0.8 87,654 - BACOVA_02682 0.41 -1.0 87,654 - BACOVA_02682 0.41 -1.5 87,657 + BACOVA_02682 0.41 +0.4 87,657 + BACOVA_02682 0.41 +0.2 87,658 - BACOVA_02682 0.41 +0.8 87,658 - BACOVA_02682 0.41 -1.3 87,658 - BACOVA_02682 0.41 -1.0 87,663 + BACOVA_02682 0.41 +1.8 87,678 + BACOVA_02682 0.42 +0.6 87,678 + BACOVA_02682 0.42 -0.2 87,679 - BACOVA_02682 0.42 -0.9 87,693 - BACOVA_02682 0.43 +0.8 87,695 + BACOVA_02682 0.43 +0.3 87,696 - BACOVA_02682 0.44 +0.1 87,701 - BACOVA_02682 0.44 +0.2 87,715 - BACOVA_02682 0.45 +0.6 87,727 - BACOVA_02682 0.46 -0.4 87,731 + BACOVA_02682 0.46 +0.4 87,731 + BACOVA_02682 0.46 +0.1 87,732 - BACOVA_02682 0.46 -1.2 87,732 - BACOVA_02682 0.46 -0.1 87,757 + BACOVA_02682 0.47 -1.9 87,790 - BACOVA_02682 0.50 -2.0 87,795 + BACOVA_02682 0.50 +0.5 87,795 + BACOVA_02682 0.50 -0.2 87,796 - BACOVA_02682 0.50 +0.1 87,796 - BACOVA_02682 0.50 -0.2 87,796 - BACOVA_02682 0.50 +0.8 87,828 + BACOVA_02682 0.52 +0.8 87,828 + BACOVA_02682 0.52 -0.8 87,852 + BACOVA_02682 0.53 +0.4 87,853 - BACOVA_02682 0.54 -1.0 87,862 + BACOVA_02682 0.54 +0.2 87,863 - BACOVA_02682 0.54 -1.0 87,863 - BACOVA_02682 0.54 -0.5 87,870 + BACOVA_02682 0.55 -0.1 87,902 + BACOVA_02682 0.57 -0.4 87,959 + BACOVA_02682 0.60 +0.4 87,960 - BACOVA_02682 0.60 -1.3 87,996 + BACOVA_02682 0.63 -0.7 87,997 - BACOVA_02682 0.63 -2.8 88,018 + BACOVA_02682 0.64 -0.2 88,019 - BACOVA_02682 0.64 -0.3 88,019 - BACOVA_02682 0.64 +0.9 88,062 + BACOVA_02682 0.67 +0.4 88,068 - BACOVA_02682 0.67 +0.1 88,081 + BACOVA_02682 0.68 +0.2 88,174 + BACOVA_02682 0.74 -0.8 88,286 - BACOVA_02682 0.81 +0.3 88,343 - BACOVA_02682 0.85 +0.6 88,366 + BACOVA_02682 0.86 -0.1 88,366 + BACOVA_02682 0.86 +0.4 88,367 - BACOVA_02682 0.86 +0.6 88,389 - BACOVA_02682 0.88 -0.6 88,503 + +1.2 88,507 + +0.5 88,508 - -0.6 88,554 + -1.3 88,554 + -0.9 88,554 + +0.9 88,554 + -0.7 88,555 - -0.1 88,555 - -0.7 88,555 - -1.1 88,561 + -0.8 88,564 + +0.3 88,591 - -0.1 88,595 + +0.7 88,634 + +0.0 88,634 + +0.5 88,635 - +0.4 88,638 - +0.1 88,644 + +0.1 88,645 - +0.1 88,656 - -1.7 88,727 + BACOVA_02683 0.14 -0.8 88,727 + BACOVA_02683 0.14 +1.3 88,728 - BACOVA_02683 0.15 +0.9 88,755 + BACOVA_02683 0.17 +1.6 88,774 - BACOVA_02683 0.19 -0.9 88,802 + BACOVA_02683 0.22 -0.7 88,802 + BACOVA_02683 0.22 +0.5 88,802 + BACOVA_02683 0.22 +0.3 88,803 - BACOVA_02683 0.22 -0.0 88,803 - BACOVA_02683 0.22 -0.3 88,803 - BACOVA_02683 0.22 +0.4 88,803 - BACOVA_02683 0.22 +1.0 88,803 - BACOVA_02683 0.22 +0.1 88,804 + BACOVA_02683 0.22 -0.7 88,804 + BACOVA_02683 0.22 -0.5 88,804 + BACOVA_02683 0.22 +0.1 88,804 + BACOVA_02683 0.22 -0.6 88,804 + BACOVA_02683 0.22 -0.5 88,804 + BACOVA_02683 0.22 +1.3 88,805 - BACOVA_02683 0.22 -1.8 88,805 - BACOVA_02683 0.22 -0.6 88,877 - BACOVA_02683 0.29 +1.8 88,877 - BACOVA_02683 0.29 -0.5 88,921 + BACOVA_02683 0.34 -0.8 89,010 + BACOVA_02683 0.43 +1.4 89,099 + BACOVA_02683 0.51 -0.4 89,147 + BACOVA_02683 0.56 +0.9 89,148 - BACOVA_02683 0.56 +0.2 89,153 + BACOVA_02683 0.57 -2.6 89,153 + BACOVA_02683 0.57 -1.0 89,154 - BACOVA_02683 0.57 +0.7 89,239 + BACOVA_02683 0.65 -0.5 89,240 - BACOVA_02683 0.65 +0.3 89,243 + BACOVA_02683 0.66 +0.6 89,295 + BACOVA_02683 0.71 +0.5 89,314 + BACOVA_02683 0.73 +0.8 89,320 + BACOVA_02683 0.73 -0.9 89,380 - BACOVA_02683 0.79 -0.2 89,382 - BACOVA_02683 0.79 +0.2 89,382 - BACOVA_02683 0.79 -1.5 89,382 - BACOVA_02683 0.79 -1.5 89,388 + BACOVA_02683 0.80 +0.7 89,458 + BACOVA_02683 0.87 +0.6 89,470 + BACOVA_02683 0.88 -0.8 89,477 + BACOVA_02683 0.89 -0.6 89,478 - BACOVA_02683 0.89 -0.2 89,537 + -1.9 89,543 + -0.3 89,555 + -0.9 89,556 - -1.7 89,556 - +0.0 89,558 - +0.1 89,562 + -1.5 89,562 + +0.3 89,562 + +0.5 89,563 - -0.8 89,563 - -0.1 89,563 - +0.6 89,563 - +0.4 89,564 + -1.7 89,601 + -0.2 89,613 + +0.3 89,617 - +0.0 89,628 + +0.2 89,629 - -0.3 89,645 + +0.4 89,713 - -0.5 89,758 + BACOVA_02684 0.17 -1.8 89,758 + BACOVA_02684 0.17 -0.9 89,799 + BACOVA_02684 0.24 -1.8 89,799 + BACOVA_02684 0.24 -1.1 89,800 - BACOVA_02684 0.25 +0.6 89,800 - BACOVA_02684 0.25 -0.6 89,800 - BACOVA_02684 0.25 -1.2 89,801 + BACOVA_02684 0.25 -0.7 89,802 - BACOVA_02684 0.25 +0.3 89,809 - BACOVA_02684 0.26 -0.3 89,809 - BACOVA_02684 0.26 -0.8 89,855 - BACOVA_02684 0.34 -0.9 89,882 - BACOVA_02684 0.39 +0.6 89,934 + BACOVA_02684 0.48 +0.8 89,935 - BACOVA_02684 0.48 -1.6 89,946 + BACOVA_02684 0.50 +0.2 89,947 - BACOVA_02684 0.50 -0.8 89,947 - BACOVA_02684 0.50 +0.4 89,986 + BACOVA_02684 0.57 +0.4 90,037 + BACOVA_02684 0.65 -2.5 90,037 + BACOVA_02684 0.65 -0.6 90,038 - BACOVA_02684 0.65 -0.0 90,067 + BACOVA_02684 0.70 -1.9 90,253 - -0.2 90,259 - -1.6 90,259 - -1.7 90,263 + -0.9 90,263 + +0.7 90,299 - -0.3 90,343 + -1.4 90,347 + +1.6 90,348 - -1.6 90,348 - -1.2 90,464 + BACOVA_02685 0.10 -0.5 90,488 + BACOVA_02685 0.12 -1.6 90,517 + BACOVA_02685 0.13 +0.6 90,529 + BACOVA_02685 0.14 +0.3
Or see this region's nucleotide sequence