Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02660

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02659 and BACOVA_02660 are separated by 200 nucleotidesBACOVA_02660 and BACOVA_02661 are separated by 110 nucleotides BACOVA_02659: BACOVA_02659 - glycosyl hydrolase family 3 N-terminal domain protein, at 57,967 to 60,327 _02659 BACOVA_02660: BACOVA_02660 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 60,528 to 60,848 _02660 BACOVA_02661: BACOVA_02661 - hypothetical protein, at 60,959 to 62,554 _02661 Position (kb) 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.532 kb on + strand, within BACOVA_02659at 59.532 kb on + strand, within BACOVA_02659at 59.561 kb on - strand, within BACOVA_02659at 59.592 kb on + strand, within BACOVA_02659at 59.686 kb on - strand, within BACOVA_02659at 59.686 kb on - strand, within BACOVA_02659at 59.694 kb on + strand, within BACOVA_02659at 59.695 kb on - strand, within BACOVA_02659at 59.696 kb on + strand, within BACOVA_02659at 59.697 kb on - strand, within BACOVA_02659at 59.743 kb on + strand, within BACOVA_02659at 59.743 kb on + strand, within BACOVA_02659at 59.763 kb on + strand, within BACOVA_02659at 59.763 kb on + strand, within BACOVA_02659at 59.823 kb on + strand, within BACOVA_02659at 59.842 kb on + strand, within BACOVA_02659at 59.842 kb on + strand, within BACOVA_02659at 59.842 kb on + strand, within BACOVA_02659at 59.887 kb on + strand, within BACOVA_02659at 59.888 kb on - strand, within BACOVA_02659at 59.893 kb on + strand, within BACOVA_02659at 59.894 kb on - strand, within BACOVA_02659at 59.894 kb on - strand, within BACOVA_02659at 59.941 kb on + strand, within BACOVA_02659at 59.956 kb on + strand, within BACOVA_02659at 59.957 kb on - strand, within BACOVA_02659at 59.972 kb on + strand, within BACOVA_02659at 59.977 kb on - strand, within BACOVA_02659at 60.008 kb on + strand, within BACOVA_02659at 60.008 kb on + strand, within BACOVA_02659at 60.023 kb on + strand, within BACOVA_02659at 60.080 kb on + strand, within BACOVA_02659at 60.081 kb on - strand, within BACOVA_02659at 60.268 kb on - strandat 60.273 kb on - strandat 60.312 kb on + strandat 60.347 kb on + strandat 60.349 kb on + strandat 60.350 kb on - strandat 60.352 kb on - strandat 60.352 kb on - strandat 60.352 kb on - strandat 60.352 kb on - strandat 60.448 kb on + strandat 60.460 kb on - strandat 60.474 kb on + strandat 60.475 kb on - strandat 60.475 kb on - strandat 60.488 kb on + strandat 60.491 kb on - strandat 60.491 kb on - strandat 60.503 kb on + strandat 60.520 kb on + strandat 60.520 kb on + strandat 60.527 kb on - strandat 60.546 kb on - strandat 60.546 kb on - strandat 60.599 kb on - strand, within BACOVA_02660at 60.605 kb on + strand, within BACOVA_02660at 60.613 kb on + strand, within BACOVA_02660at 60.613 kb on + strand, within BACOVA_02660at 60.614 kb on - strand, within BACOVA_02660at 60.614 kb on - strand, within BACOVA_02660at 60.688 kb on + strand, within BACOVA_02660at 60.690 kb on + strand, within BACOVA_02660at 60.690 kb on + strand, within BACOVA_02660at 60.690 kb on + strand, within BACOVA_02660at 60.690 kb on + strand, within BACOVA_02660at 60.690 kb on + strand, within BACOVA_02660at 60.695 kb on + strand, within BACOVA_02660at 60.696 kb on - strand, within BACOVA_02660at 60.696 kb on - strand, within BACOVA_02660at 60.699 kb on + strand, within BACOVA_02660at 60.699 kb on + strand, within BACOVA_02660at 60.700 kb on - strand, within BACOVA_02660at 60.700 kb on - strand, within BACOVA_02660at 60.701 kb on + strand, within BACOVA_02660at 60.702 kb on - strand, within BACOVA_02660at 60.702 kb on - strand, within BACOVA_02660at 60.702 kb on - strand, within BACOVA_02660at 60.820 kb on + strandat 60.830 kb on + strandat 60.840 kb on - strandat 60.865 kb on + strandat 60.865 kb on + strandat 60.885 kb on + strandat 60.885 kb on + strandat 60.893 kb on + strandat 60.894 kb on - strandat 60.896 kb on + strandat 60.896 kb on + strandat 60.918 kb on - strandat 60.942 kb on + strandat 60.961 kb on - strandat 60.982 kb on + strandat 60.983 kb on - strandat 60.983 kb on - strandat 60.983 kb on - strandat 61.069 kb on - strandat 61.092 kb on - strandat 61.092 kb on - strandat 61.109 kb on - strandat 61.139 kb on - strand, within BACOVA_02661at 61.139 kb on - strand, within BACOVA_02661at 61.145 kb on + strand, within BACOVA_02661at 61.146 kb on - strand, within BACOVA_02661at 61.155 kb on + strand, within BACOVA_02661at 61.174 kb on + strand, within BACOVA_02661at 61.175 kb on - strand, within BACOVA_02661at 61.176 kb on + strand, within BACOVA_02661at 61.177 kb on - strand, within BACOVA_02661at 61.288 kb on + strand, within BACOVA_02661at 61.290 kb on + strand, within BACOVA_02661at 61.290 kb on + strand, within BACOVA_02661at 61.294 kb on + strand, within BACOVA_02661at 61.299 kb on - strand, within BACOVA_02661at 61.354 kb on + strand, within BACOVA_02661at 61.381 kb on + strand, within BACOVA_02661at 61.384 kb on - strand, within BACOVA_02661at 61.396 kb on + strand, within BACOVA_02661at 61.397 kb on - strand, within BACOVA_02661at 61.438 kb on + strand, within BACOVA_02661at 61.453 kb on + strand, within BACOVA_02661at 61.453 kb on + strand, within BACOVA_02661at 61.453 kb on + strand, within BACOVA_02661at 61.454 kb on - strand, within BACOVA_02661at 61.464 kb on + strand, within BACOVA_02661at 61.464 kb on + strand, within BACOVA_02661at 61.484 kb on - strand, within BACOVA_02661at 61.567 kb on + strand, within BACOVA_02661at 61.571 kb on + strand, within BACOVA_02661at 61.605 kb on - strand, within BACOVA_02661at 61.605 kb on - strand, within BACOVA_02661at 61.614 kb on - strand, within BACOVA_02661at 61.633 kb on - strand, within BACOVA_02661at 61.633 kb on - strand, within BACOVA_02661at 61.636 kb on + strand, within BACOVA_02661at 61.637 kb on - strand, within BACOVA_02661at 61.637 kb on - strand, within BACOVA_02661at 61.680 kb on + strand, within BACOVA_02661at 61.681 kb on - strand, within BACOVA_02661at 61.684 kb on + strand, within BACOVA_02661at 61.684 kb on + strand, within BACOVA_02661at 61.685 kb on - strand, within BACOVA_02661at 61.759 kb on + strand, within BACOVA_02661at 61.790 kb on - strand, within BACOVA_02661at 61.799 kb on - strand, within BACOVA_02661

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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59,532 + BACOVA_02659 0.66 +0.8
59,532 + BACOVA_02659 0.66 -0.5
59,561 - BACOVA_02659 0.68 -1.2
59,592 + BACOVA_02659 0.69 +0.5
59,686 - BACOVA_02659 0.73 +0.7
59,686 - BACOVA_02659 0.73 -0.0
59,694 + BACOVA_02659 0.73 -1.7
59,695 - BACOVA_02659 0.73 -0.1
59,696 + BACOVA_02659 0.73 -0.4
59,697 - BACOVA_02659 0.73 -1.0
59,743 + BACOVA_02659 0.75 -0.9
59,743 + BACOVA_02659 0.75 -1.5
59,763 + BACOVA_02659 0.76 +0.3
59,763 + BACOVA_02659 0.76 -0.3
59,823 + BACOVA_02659 0.79 +0.2
59,842 + BACOVA_02659 0.79 -0.7
59,842 + BACOVA_02659 0.79 -0.4
59,842 + BACOVA_02659 0.79 -1.0
59,887 + BACOVA_02659 0.81 -0.1
59,888 - BACOVA_02659 0.81 +0.2
59,893 + BACOVA_02659 0.82 -1.1
59,894 - BACOVA_02659 0.82 +0.3
59,894 - BACOVA_02659 0.82 -0.8
59,941 + BACOVA_02659 0.84 +0.5
59,956 + BACOVA_02659 0.84 -0.8
59,957 - BACOVA_02659 0.84 +0.2
59,972 + BACOVA_02659 0.85 -0.7
59,977 - BACOVA_02659 0.85 -0.6
60,008 + BACOVA_02659 0.86 -0.5
60,008 + BACOVA_02659 0.86 +0.0
60,023 + BACOVA_02659 0.87 -1.2
60,080 + BACOVA_02659 0.89 -1.6
60,081 - BACOVA_02659 0.90 +0.7
60,268 - -0.8
60,273 - -0.3
60,312 + +1.1
60,347 + -0.3
60,349 + -0.6
60,350 - +0.4
60,352 - +0.4
60,352 - +1.0
60,352 - -0.8
60,352 - +0.3
60,448 + -0.7
60,460 - -0.2
60,474 + +0.6
60,475 - +0.7
60,475 - -0.3
60,488 + -1.2
60,491 - +0.5
60,491 - +0.7
60,503 + +0.5
60,520 + +0.4
60,520 + +0.6
60,527 - +0.4
60,546 - -0.7
60,546 - +0.8
60,599 - BACOVA_02660 0.22 -1.2
60,605 + BACOVA_02660 0.24 +0.8
60,613 + BACOVA_02660 0.26 +0.3
60,613 + BACOVA_02660 0.26 +0.9
60,614 - BACOVA_02660 0.27 +0.1
60,614 - BACOVA_02660 0.27 -0.4
60,688 + BACOVA_02660 0.50 +0.2
60,690 + BACOVA_02660 0.50 +0.9
60,690 + BACOVA_02660 0.50 +0.2
60,690 + BACOVA_02660 0.50 -0.8
60,690 + BACOVA_02660 0.50 -0.3
60,690 + BACOVA_02660 0.50 +0.7
60,695 + BACOVA_02660 0.52 +0.5
60,696 - BACOVA_02660 0.52 +0.9
60,696 - BACOVA_02660 0.52 +0.1
60,699 + BACOVA_02660 0.53 +0.5
60,699 + BACOVA_02660 0.53 +0.6
60,700 - BACOVA_02660 0.54 +0.2
60,700 - BACOVA_02660 0.54 +0.3
60,701 + BACOVA_02660 0.54 +0.6
60,702 - BACOVA_02660 0.54 -0.3
60,702 - BACOVA_02660 0.54 -0.8
60,702 - BACOVA_02660 0.54 -0.9
60,820 + -0.6
60,830 + -0.2
60,840 - -0.1
60,865 + -1.7
60,865 + +0.1
60,885 + -0.4
60,885 + -0.4
60,893 + -0.6
60,894 - -0.6
60,896 + -2.4
60,896 + -0.5
60,918 - -0.1
60,942 + -0.4
60,961 - +0.1
60,982 + +1.8
60,983 - +0.1
60,983 - -1.7
60,983 - +0.8
61,069 - +0.3
61,092 - -0.4
61,092 - -0.7
61,109 - -0.7
61,139 - BACOVA_02661 0.11 +0.8
61,139 - BACOVA_02661 0.11 -0.9
61,145 + BACOVA_02661 0.12 +0.7
61,146 - BACOVA_02661 0.12 +0.8
61,155 + BACOVA_02661 0.12 -0.8
61,174 + BACOVA_02661 0.13 -0.6
61,175 - BACOVA_02661 0.14 -3.0
61,176 + BACOVA_02661 0.14 +0.6
61,177 - BACOVA_02661 0.14 +0.5
61,288 + BACOVA_02661 0.21 +1.0
61,290 + BACOVA_02661 0.21 +0.1
61,290 + BACOVA_02661 0.21 +0.2
61,294 + BACOVA_02661 0.21 -1.1
61,299 - BACOVA_02661 0.21 -0.4
61,354 + BACOVA_02661 0.25 +0.2
61,381 + BACOVA_02661 0.26 -0.8
61,384 - BACOVA_02661 0.27 +0.5
61,396 + BACOVA_02661 0.27 +0.2
61,397 - BACOVA_02661 0.27 -3.1
61,438 + BACOVA_02661 0.30 -1.7
61,453 + BACOVA_02661 0.31 -1.0
61,453 + BACOVA_02661 0.31 +0.7
61,453 + BACOVA_02661 0.31 +0.3
61,454 - BACOVA_02661 0.31 -0.8
61,464 + BACOVA_02661 0.32 -0.2
61,464 + BACOVA_02661 0.32 +1.0
61,484 - BACOVA_02661 0.33 +0.5
61,567 + BACOVA_02661 0.38 -0.6
61,571 + BACOVA_02661 0.38 -1.0
61,605 - BACOVA_02661 0.40 +0.8
61,605 - BACOVA_02661 0.40 +0.2
61,614 - BACOVA_02661 0.41 +0.1
61,633 - BACOVA_02661 0.42 +0.6
61,633 - BACOVA_02661 0.42 +0.9
61,636 + BACOVA_02661 0.42 -0.0
61,637 - BACOVA_02661 0.42 +1.0
61,637 - BACOVA_02661 0.42 -1.1
61,680 + BACOVA_02661 0.45 -1.2
61,681 - BACOVA_02661 0.45 -1.4
61,684 + BACOVA_02661 0.45 -1.1
61,684 + BACOVA_02661 0.45 -0.9
61,685 - BACOVA_02661 0.45 +1.1
61,759 + BACOVA_02661 0.50 +0.3
61,790 - BACOVA_02661 0.52 +0.0
61,799 - BACOVA_02661 0.53 -1.2

Or see this region's nucleotide sequence