Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02593 and BACOVA_02594 are separated by 83 nucleotides BACOVA_02594 and BACOVA_02595 are separated by 180 nucleotides
BACOVA_02593: BACOVA_02593 - hypothetical protein, at 363,548 to 364,669
_02593
BACOVA_02594: BACOVA_02594 - hypothetical protein, at 364,753 to 365,295
_02594
BACOVA_02595: BACOVA_02595 - hypothetical protein, at 365,476 to 367,032
_02595
Position (kb) 364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 363.882 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.970 kb on + strand, within BACOVA_02593 at 363.999 kb on - strand, within BACOVA_02593 at 364.038 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.114 kb on + strand, within BACOVA_02593 at 364.151 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.169 kb on + strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.170 kb on - strand, within BACOVA_02593 at 364.171 kb on + strand, within BACOVA_02593 at 364.200 kb on - strand, within BACOVA_02593 at 364.292 kb on - strand, within BACOVA_02593 at 364.304 kb on + strand, within BACOVA_02593 at 364.305 kb on - strand, within BACOVA_02593 at 364.427 kb on + strand, within BACOVA_02593 at 364.428 kb on - strand, within BACOVA_02593 at 364.459 kb on + strand, within BACOVA_02593 at 364.460 kb on - strand, within BACOVA_02593 at 364.465 kb on + strand, within BACOVA_02593 at 364.532 kb on + strand, within BACOVA_02593 at 364.533 kb on - strand, within BACOVA_02593 at 364.534 kb on + strand, within BACOVA_02593 at 364.535 kb on - strand, within BACOVA_02593 at 364.583 kb on + strand at 364.675 kb on + strand at 364.678 kb on - strand at 364.679 kb on + strand at 364.682 kb on - strand at 364.682 kb on - strand at 364.686 kb on - strand at 364.694 kb on - strand at 364.948 kb on + strand, within BACOVA_02594 at 364.948 kb on + strand, within BACOVA_02594 at 365.077 kb on + strand, within BACOVA_02594 at 365.125 kb on + strand, within BACOVA_02594 at 365.130 kb on + strand, within BACOVA_02594 at 365.131 kb on - strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.134 kb on + strand, within BACOVA_02594 at 365.135 kb on - strand, within BACOVA_02594 at 365.140 kb on - strand, within BACOVA_02594 at 365.154 kb on - strand, within BACOVA_02594 at 365.157 kb on + strand, within BACOVA_02594 at 365.190 kb on + strand, within BACOVA_02594 at 365.257 kb on + strand at 365.258 kb on - strand at 365.309 kb on + strand at 365.317 kb on - strand at 365.364 kb on + strand at 365.364 kb on + strand at 365.368 kb on + strand at 365.369 kb on - strand at 365.473 kb on + strand at 365.475 kb on + strand at 365.475 kb on + strand at 365.566 kb on + strand at 365.868 kb on + strand, within BACOVA_02595 at 366.280 kb on - strand, within BACOVA_02595
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 363,882 + BACOVA_02593 0.30 -1.3 363,970 + BACOVA_02593 0.38 -2.6 363,970 + BACOVA_02593 0.38 -2.8 363,999 - BACOVA_02593 0.40 -2.0 364,038 + BACOVA_02593 0.44 -0.2 364,114 + BACOVA_02593 0.50 -1.3 364,114 + BACOVA_02593 0.50 -1.8 364,151 + BACOVA_02593 0.54 -0.7 364,169 + BACOVA_02593 0.55 -1.7 364,169 + BACOVA_02593 0.55 -1.9 364,169 + BACOVA_02593 0.55 -2.0 364,170 - BACOVA_02593 0.55 -1.6 364,170 - BACOVA_02593 0.55 -2.2 364,171 + BACOVA_02593 0.56 +0.0 364,200 - BACOVA_02593 0.58 -1.5 364,292 - BACOVA_02593 0.66 -1.9 364,304 + BACOVA_02593 0.67 -1.2 364,305 - BACOVA_02593 0.67 -1.0 364,427 + BACOVA_02593 0.78 -3.6 364,428 - BACOVA_02593 0.78 -0.7 364,459 + BACOVA_02593 0.81 -1.0 364,460 - BACOVA_02593 0.81 -1.2 364,465 + BACOVA_02593 0.82 -1.6 364,532 + BACOVA_02593 0.88 +0.0 364,533 - BACOVA_02593 0.88 -1.0 364,534 + BACOVA_02593 0.88 -1.2 364,535 - BACOVA_02593 0.88 -1.0 364,583 + -1.8 364,675 + -2.3 364,678 - -0.8 364,679 + -0.8 364,682 - -2.2 364,682 - -1.2 364,686 - -0.2 364,694 - -1.1 364,948 + BACOVA_02594 0.36 -1.3 364,948 + BACOVA_02594 0.36 -0.5 365,077 + BACOVA_02594 0.60 -1.8 365,125 + BACOVA_02594 0.69 -1.8 365,130 + BACOVA_02594 0.69 -2.4 365,131 - BACOVA_02594 0.70 +0.8 365,134 + BACOVA_02594 0.70 -2.3 365,134 + BACOVA_02594 0.70 -0.8 365,134 + BACOVA_02594 0.70 -1.6 365,135 - BACOVA_02594 0.70 +0.6 365,140 - BACOVA_02594 0.71 -1.5 365,154 - BACOVA_02594 0.74 -0.2 365,157 + BACOVA_02594 0.74 +0.8 365,190 + BACOVA_02594 0.80 -0.9 365,257 + -2.7 365,258 - -0.7 365,309 + -1.2 365,317 - +0.4 365,364 + -1.6 365,364 + +0.3 365,368 + -0.8 365,369 - -0.8 365,473 + +0.1 365,475 + -3.0 365,475 + -0.3 365,566 + +0.7 365,868 + BACOVA_02595 0.25 +0.6 366,280 - BACOVA_02595 0.52 +0.2
Or see this region's nucleotide sequence