Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02049 and BACOVA_02050 are separated by 41 nucleotides BACOVA_02050 and BACOVA_02051 are separated by 83 nucleotides
BACOVA_02049: BACOVA_02049 - sugar-binding domain protein, at 355,199 to 356,317
_02049
BACOVA_02050: BACOVA_02050 - ribokinase, at 356,359 to 357,273
_02050
BACOVA_02051: BACOVA_02051 - TonB-linked outer membrane protein, SusC/RagA family, at 357,357 to 360,227
_02051
Position (kb) 356
357
358 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 355.367 kb on + strand, within BACOVA_02049 at 355.368 kb on - strand, within BACOVA_02049 at 355.372 kb on - strand, within BACOVA_02049 at 355.381 kb on - strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.387 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.432 kb on + strand, within BACOVA_02049 at 355.433 kb on - strand, within BACOVA_02049 at 355.442 kb on + strand, within BACOVA_02049 at 355.472 kb on - strand, within BACOVA_02049 at 355.479 kb on - strand, within BACOVA_02049 at 355.487 kb on + strand, within BACOVA_02049 at 355.504 kb on + strand, within BACOVA_02049 at 355.534 kb on + strand, within BACOVA_02049 at 355.536 kb on + strand, within BACOVA_02049 at 355.633 kb on + strand, within BACOVA_02049 at 355.634 kb on - strand, within BACOVA_02049 at 355.642 kb on + strand, within BACOVA_02049 at 355.664 kb on - strand, within BACOVA_02049 at 355.676 kb on - strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.691 kb on + strand, within BACOVA_02049 at 355.698 kb on - strand, within BACOVA_02049 at 355.714 kb on - strand, within BACOVA_02049 at 355.725 kb on + strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.754 kb on - strand, within BACOVA_02049 at 355.795 kb on + strand, within BACOVA_02049 at 355.796 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.801 kb on + strand, within BACOVA_02049 at 355.857 kb on - strand, within BACOVA_02049 at 355.862 kb on - strand, within BACOVA_02049 at 355.882 kb on + strand, within BACOVA_02049 at 355.883 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.935 kb on + strand, within BACOVA_02049 at 355.936 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.941 kb on + strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.993 kb on + strand, within BACOVA_02049 at 355.997 kb on + strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.019 kb on - strand, within BACOVA_02049 at 356.020 kb on + strand, within BACOVA_02049 at 356.021 kb on - strand, within BACOVA_02049 at 356.023 kb on + strand, within BACOVA_02049 at 356.024 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.108 kb on - strand, within BACOVA_02049 at 356.126 kb on - strand, within BACOVA_02049 at 356.164 kb on + strand, within BACOVA_02049 at 356.193 kb on - strand, within BACOVA_02049 at 356.343 kb on - strand at 356.343 kb on - strand at 356.347 kb on - strand at 356.347 kb on - strand at 356.356 kb on + strand at 356.356 kb on + strand at 356.357 kb on - strand at 356.382 kb on - strand at 356.391 kb on + strand at 356.398 kb on - strand at 356.494 kb on - strand, within BACOVA_02050 at 356.504 kb on + strand, within BACOVA_02050 at 356.540 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.611 kb on - strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.619 kb on - strand, within BACOVA_02050 at 356.625 kb on + strand, within BACOVA_02050 at 356.649 kb on - strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.775 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.842 kb on - strand, within BACOVA_02050 at 356.849 kb on + strand, within BACOVA_02050 at 356.850 kb on - strand, within BACOVA_02050 at 356.852 kb on + strand, within BACOVA_02050 at 356.917 kb on - strand, within BACOVA_02050 at 356.996 kb on - strand, within BACOVA_02050 at 356.997 kb on + strand, within BACOVA_02050 at 357.015 kb on - strand, within BACOVA_02050 at 357.030 kb on + strand, within BACOVA_02050 at 357.031 kb on - strand, within BACOVA_02050 at 357.075 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.130 kb on - strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.189 kb on + strand at 357.190 kb on - strand at 357.191 kb on + strand at 357.202 kb on - strand at 357.202 kb on - strand at 357.243 kb on - strand at 357.246 kb on + strand at 357.247 kb on - strand at 357.247 kb on - strand at 357.249 kb on - strand at 357.266 kb on + strand at 357.267 kb on - strand at 357.272 kb on - strand at 357.281 kb on + strand at 357.282 kb on - strand at 357.282 kb on - strand at 357.332 kb on + strand at 357.332 kb on + strand at 357.341 kb on - strand at 357.341 kb on - strand at 357.371 kb on + strand at 357.372 kb on - strand at 357.395 kb on + strand at 357.395 kb on + strand at 357.467 kb on + strand at 357.467 kb on + strand at 357.468 kb on - strand at 357.468 kb on - strand at 357.468 kb on - strand at 357.517 kb on + strand at 357.518 kb on - strand at 357.518 kb on - strand at 357.524 kb on + strand at 357.527 kb on - strand at 357.527 kb on - strand at 357.527 kb on - strand at 357.531 kb on + strand at 357.531 kb on + strand at 357.531 kb on + strand at 357.532 kb on - strand at 357.532 kb on - strand at 357.532 kb on - strand at 357.536 kb on - strand at 357.540 kb on + strand at 357.583 kb on + strand at 357.583 kb on + strand at 357.586 kb on + strand at 357.625 kb on + strand at 357.723 kb on - strand, within BACOVA_02051 at 357.754 kb on + strand, within BACOVA_02051 at 357.761 kb on + strand, within BACOVA_02051 at 357.795 kb on + strand, within BACOVA_02051 at 357.802 kb on + strand, within BACOVA_02051 at 357.805 kb on + strand, within BACOVA_02051 at 357.847 kb on + strand, within BACOVA_02051 at 357.851 kb on + strand, within BACOVA_02051 at 357.888 kb on - strand, within BACOVA_02051 at 357.944 kb on + strand, within BACOVA_02051 at 357.944 kb on + strand, within BACOVA_02051 at 357.945 kb on - strand, within BACOVA_02051 at 357.949 kb on - strand, within BACOVA_02051 at 357.989 kb on + strand, within BACOVA_02051 at 358.024 kb on - strand, within BACOVA_02051 at 358.086 kb on + strand, within BACOVA_02051 at 358.097 kb on + strand, within BACOVA_02051 at 358.098 kb on - strand, within BACOVA_02051 at 358.175 kb on + strand, within BACOVA_02051 at 358.203 kb on - strand, within BACOVA_02051
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 355,367 + BACOVA_02049 0.15 -0.7 355,368 - BACOVA_02049 0.15 -1.6 355,372 - BACOVA_02049 0.15 -1.9 355,381 - BACOVA_02049 0.16 -1.3 355,382 + BACOVA_02049 0.16 -0.9 355,382 + BACOVA_02049 0.16 -2.4 355,387 + BACOVA_02049 0.17 -3.1 355,411 + BACOVA_02049 0.19 -2.0 355,411 + BACOVA_02049 0.19 -0.6 355,411 + BACOVA_02049 0.19 -0.3 355,411 + BACOVA_02049 0.19 -2.2 355,412 - BACOVA_02049 0.19 -1.8 355,412 - BACOVA_02049 0.19 -2.2 355,432 + BACOVA_02049 0.21 -1.7 355,433 - BACOVA_02049 0.21 -2.0 355,442 + BACOVA_02049 0.22 -1.9 355,472 - BACOVA_02049 0.24 -1.2 355,479 - BACOVA_02049 0.25 -1.9 355,487 + BACOVA_02049 0.26 -0.9 355,504 + BACOVA_02049 0.27 -0.8 355,534 + BACOVA_02049 0.30 -1.5 355,536 + BACOVA_02049 0.30 -2.2 355,633 + BACOVA_02049 0.39 -0.9 355,634 - BACOVA_02049 0.39 -1.6 355,642 + BACOVA_02049 0.40 -1.1 355,664 - BACOVA_02049 0.42 -0.3 355,676 - BACOVA_02049 0.43 -2.8 355,678 + BACOVA_02049 0.43 -0.4 355,678 + BACOVA_02049 0.43 -2.4 355,691 + BACOVA_02049 0.44 +0.0 355,698 - BACOVA_02049 0.45 -1.6 355,714 - BACOVA_02049 0.46 -1.4 355,725 + BACOVA_02049 0.47 -1.7 355,726 - BACOVA_02049 0.47 -1.4 355,726 - BACOVA_02049 0.47 -1.6 355,726 - BACOVA_02049 0.47 -1.8 355,739 + BACOVA_02049 0.48 +0.2 355,739 + BACOVA_02049 0.48 -0.9 355,754 - BACOVA_02049 0.50 -1.3 355,795 + BACOVA_02049 0.53 -1.2 355,796 - BACOVA_02049 0.53 -2.2 355,799 - BACOVA_02049 0.54 -0.8 355,799 - BACOVA_02049 0.54 -3.0 355,801 + BACOVA_02049 0.54 -1.6 355,857 - BACOVA_02049 0.59 +0.6 355,862 - BACOVA_02049 0.59 -0.7 355,882 + BACOVA_02049 0.61 -2.8 355,883 - BACOVA_02049 0.61 -3.8 355,934 - BACOVA_02049 0.66 -0.9 355,934 - BACOVA_02049 0.66 -1.9 355,935 + BACOVA_02049 0.66 -0.8 355,936 - BACOVA_02049 0.66 -1.9 355,940 - BACOVA_02049 0.66 -1.1 355,940 - BACOVA_02049 0.66 -1.9 355,941 + BACOVA_02049 0.66 -0.9 355,942 - BACOVA_02049 0.66 -2.6 355,942 - BACOVA_02049 0.66 -1.9 355,973 + BACOVA_02049 0.69 -0.9 355,973 + BACOVA_02049 0.69 -1.4 355,973 + BACOVA_02049 0.69 -1.5 355,973 + BACOVA_02049 0.69 -0.4 355,974 - BACOVA_02049 0.69 -1.7 355,974 - BACOVA_02049 0.69 -2.1 355,974 - BACOVA_02049 0.69 -0.0 355,976 - BACOVA_02049 0.69 -1.2 355,976 - BACOVA_02049 0.69 -1.6 355,993 + BACOVA_02049 0.71 -2.7 355,997 + BACOVA_02049 0.71 -1.8 355,998 - BACOVA_02049 0.71 -1.3 355,998 - BACOVA_02049 0.71 -1.1 356,018 + BACOVA_02049 0.73 -1.6 356,018 + BACOVA_02049 0.73 -2.4 356,019 - BACOVA_02049 0.73 -1.7 356,020 + BACOVA_02049 0.73 -1.6 356,021 - BACOVA_02049 0.73 -0.8 356,023 + BACOVA_02049 0.74 -2.0 356,024 - BACOVA_02049 0.74 -3.2 356,026 - BACOVA_02049 0.74 -1.6 356,026 - BACOVA_02049 0.74 -1.3 356,026 - BACOVA_02049 0.74 -1.7 356,108 - BACOVA_02049 0.81 -2.9 356,126 - BACOVA_02049 0.83 -3.2 356,164 + BACOVA_02049 0.86 -1.3 356,193 - BACOVA_02049 0.89 -2.7 356,343 - +0.5 356,343 - -0.6 356,347 - -0.3 356,347 - -1.9 356,356 + -1.2 356,356 + -0.3 356,357 - +0.2 356,382 - +0.2 356,391 + -1.4 356,398 - +0.6 356,494 - BACOVA_02050 0.15 -0.4 356,504 + BACOVA_02050 0.16 +0.1 356,540 + BACOVA_02050 0.20 -1.3 356,544 + BACOVA_02050 0.20 +0.3 356,544 + BACOVA_02050 0.20 +0.1 356,544 + BACOVA_02050 0.20 -0.1 356,610 + BACOVA_02050 0.27 +0.3 356,610 + BACOVA_02050 0.27 -1.4 356,611 - BACOVA_02050 0.28 +0.0 356,614 + BACOVA_02050 0.28 +0.2 356,614 + BACOVA_02050 0.28 -0.6 356,619 - BACOVA_02050 0.28 +0.6 356,625 + BACOVA_02050 0.29 -1.1 356,649 - BACOVA_02050 0.32 +1.1 356,721 + BACOVA_02050 0.40 -0.2 356,721 + BACOVA_02050 0.40 -0.4 356,721 + BACOVA_02050 0.40 -0.9 356,775 + BACOVA_02050 0.45 +0.4 356,809 + BACOVA_02050 0.49 +0.5 356,809 + BACOVA_02050 0.49 -0.6 356,810 - BACOVA_02050 0.49 -0.9 356,810 - BACOVA_02050 0.49 +0.7 356,842 - BACOVA_02050 0.53 -1.2 356,849 + BACOVA_02050 0.54 +0.3 356,850 - BACOVA_02050 0.54 -1.1 356,852 + BACOVA_02050 0.54 -0.7 356,917 - BACOVA_02050 0.61 -0.7 356,996 - BACOVA_02050 0.70 +0.8 356,997 + BACOVA_02050 0.70 -1.9 357,015 - BACOVA_02050 0.72 +0.5 357,030 + BACOVA_02050 0.73 -0.9 357,031 - BACOVA_02050 0.73 +1.0 357,075 + BACOVA_02050 0.78 +0.6 357,098 + BACOVA_02050 0.81 -2.8 357,098 + BACOVA_02050 0.81 -2.9 357,129 + BACOVA_02050 0.84 -0.6 357,129 + BACOVA_02050 0.84 -1.7 357,130 - BACOVA_02050 0.84 +1.0 357,152 + BACOVA_02050 0.87 -1.6 357,152 + BACOVA_02050 0.87 -0.2 357,189 + -1.2 357,190 - +0.7 357,191 + -1.3 357,202 - +1.4 357,202 - +0.0 357,243 - +0.3 357,246 + -2.2 357,247 - +1.0 357,247 - +0.5 357,249 - +0.4 357,266 + -2.4 357,267 - +0.7 357,272 - +0.7 357,281 + +0.7 357,282 - -0.7 357,282 - +0.3 357,332 + -1.1 357,332 + -0.9 357,341 - +0.2 357,341 - +0.5 357,371 + +0.5 357,372 - -0.2 357,395 + +0.4 357,395 + +0.4 357,467 + +1.1 357,467 + -0.1 357,468 - -2.2 357,468 - -0.8 357,468 - -0.0 357,517 + -0.6 357,518 - +1.0 357,518 - +0.5 357,524 + -0.3 357,527 - +0.5 357,527 - +0.6 357,527 - +0.4 357,531 + -0.6 357,531 + -1.4 357,531 + +0.1 357,532 - -0.1 357,532 - +2.1 357,532 - +0.8 357,536 - +0.7 357,540 + +1.4 357,583 + -0.7 357,583 + -0.1 357,586 + -2.7 357,625 + -0.3 357,723 - BACOVA_02051 0.13 +0.0 357,754 + BACOVA_02051 0.14 -0.7 357,761 + BACOVA_02051 0.14 +0.6 357,795 + BACOVA_02051 0.15 +1.3 357,802 + BACOVA_02051 0.15 +0.7 357,805 + BACOVA_02051 0.16 -1.0 357,847 + BACOVA_02051 0.17 -0.2 357,851 + BACOVA_02051 0.17 +0.7 357,888 - BACOVA_02051 0.18 +0.8 357,944 + BACOVA_02051 0.20 +1.1 357,944 + BACOVA_02051 0.20 -0.1 357,945 - BACOVA_02051 0.20 +0.1 357,949 - BACOVA_02051 0.21 +1.1 357,989 + BACOVA_02051 0.22 +0.7 358,024 - BACOVA_02051 0.23 +1.3 358,086 + BACOVA_02051 0.25 -1.1 358,097 + BACOVA_02051 0.26 -0.1 358,098 - BACOVA_02051 0.26 +0.3 358,175 + BACOVA_02051 0.28 -0.9 358,203 - BACOVA_02051 0.29 +0.7
Or see this region's nucleotide sequence