Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02045 and BACOVA_02046 are separated by 137 nucleotides BACOVA_02046 and BACOVA_02047 are separated by 510 nucleotides BACOVA_02047 and BACOVA_02048 overlap by 68 nucleotides BACOVA_02048 and BACOVA_02049 are separated by 58 nucleotides BACOVA_02049 and BACOVA_02050 are separated by 41 nucleotides
BACOVA_02045: BACOVA_02045 - TonB-linked outer membrane protein, SusC/RagA family, at 350,851 to 354,216
_02045
BACOVA_02046: BACOVA_02046 - hypothetical protein, at 354,354 to 354,488
_02046
BACOVA_02047: BACOVA_02047 - hypothetical protein, at 354,999 to 355,127
_02047
BACOVA_02048: BACOVA_02048 - hypothetical protein, at 355,060 to 355,140
_02048
BACOVA_02049: BACOVA_02049 - sugar-binding domain protein, at 355,199 to 356,317
_02049
BACOVA_02050: BACOVA_02050 - ribokinase, at 356,359 to 357,273
_02050
Position (kb) 355
356
357 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 354.217 kb on + strand at 354.218 kb on - strand at 354.228 kb on + strand at 354.228 kb on + strand at 354.228 kb on + strand at 354.229 kb on - strand at 354.229 kb on - strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.292 kb on + strand at 354.293 kb on - strand at 354.304 kb on + strand at 354.307 kb on + strand at 354.307 kb on + strand at 354.311 kb on + strand at 354.314 kb on + strand at 354.335 kb on + strand at 354.339 kb on - strand at 354.352 kb on + strand at 354.375 kb on - strand, within BACOVA_02046 at 354.404 kb on - strand, within BACOVA_02046 at 354.474 kb on + strand, within BACOVA_02046 at 354.474 kb on + strand, within BACOVA_02046 at 354.486 kb on + strand at 354.486 kb on + strand at 354.499 kb on - strand at 354.499 kb on - strand at 354.541 kb on + strand at 354.542 kb on - strand at 354.542 kb on - strand at 354.646 kb on - strand at 354.676 kb on + strand at 354.676 kb on + strand at 354.689 kb on + strand at 354.689 kb on + strand at 354.698 kb on + strand at 354.713 kb on + strand at 354.715 kb on + strand at 354.720 kb on - strand at 354.726 kb on + strand at 354.752 kb on - strand at 354.752 kb on - strand at 354.756 kb on - strand at 354.777 kb on + strand at 354.777 kb on + strand at 354.778 kb on - strand at 354.788 kb on - strand at 354.800 kb on - strand at 354.844 kb on + strand at 354.845 kb on - strand at 354.866 kb on + strand at 354.867 kb on - strand at 354.875 kb on - strand at 354.875 kb on - strand at 354.888 kb on + strand at 354.901 kb on - strand at 354.911 kb on - strand at 354.911 kb on - strand at 355.003 kb on + strand at 355.003 kb on + strand at 355.008 kb on - strand at 355.009 kb on + strand at 355.009 kb on + strand at 355.010 kb on - strand at 355.018 kb on - strand, within BACOVA_02047 at 355.020 kb on - strand, within BACOVA_02047 at 355.020 kb on - strand, within BACOVA_02047 at 355.049 kb on + strand, within BACOVA_02047 at 355.126 kb on - strand at 355.135 kb on + strand at 355.138 kb on + strand at 355.139 kb on - strand at 355.185 kb on + strand at 355.215 kb on - strand at 355.239 kb on - strand at 355.241 kb on - strand at 355.247 kb on - strand at 355.319 kb on - strand, within BACOVA_02049 at 355.356 kb on - strand, within BACOVA_02049 at 355.367 kb on + strand, within BACOVA_02049 at 355.368 kb on - strand, within BACOVA_02049 at 355.372 kb on - strand, within BACOVA_02049 at 355.381 kb on - strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.387 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.432 kb on + strand, within BACOVA_02049 at 355.433 kb on - strand, within BACOVA_02049 at 355.442 kb on + strand, within BACOVA_02049 at 355.472 kb on - strand, within BACOVA_02049 at 355.479 kb on - strand, within BACOVA_02049 at 355.487 kb on + strand, within BACOVA_02049 at 355.504 kb on + strand, within BACOVA_02049 at 355.534 kb on + strand, within BACOVA_02049 at 355.536 kb on + strand, within BACOVA_02049 at 355.633 kb on + strand, within BACOVA_02049 at 355.634 kb on - strand, within BACOVA_02049 at 355.642 kb on + strand, within BACOVA_02049 at 355.664 kb on - strand, within BACOVA_02049 at 355.676 kb on - strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.691 kb on + strand, within BACOVA_02049 at 355.698 kb on - strand, within BACOVA_02049 at 355.714 kb on - strand, within BACOVA_02049 at 355.725 kb on + strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.754 kb on - strand, within BACOVA_02049 at 355.795 kb on + strand, within BACOVA_02049 at 355.796 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.801 kb on + strand, within BACOVA_02049 at 355.857 kb on - strand, within BACOVA_02049 at 355.862 kb on - strand, within BACOVA_02049 at 355.882 kb on + strand, within BACOVA_02049 at 355.883 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.935 kb on + strand, within BACOVA_02049 at 355.936 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.941 kb on + strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.993 kb on + strand, within BACOVA_02049 at 355.997 kb on + strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.019 kb on - strand, within BACOVA_02049 at 356.020 kb on + strand, within BACOVA_02049 at 356.021 kb on - strand, within BACOVA_02049 at 356.023 kb on + strand, within BACOVA_02049 at 356.024 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.108 kb on - strand, within BACOVA_02049 at 356.126 kb on - strand, within BACOVA_02049 at 356.164 kb on + strand, within BACOVA_02049 at 356.193 kb on - strand, within BACOVA_02049 at 356.343 kb on - strand at 356.343 kb on - strand at 356.347 kb on - strand at 356.347 kb on - strand at 356.356 kb on + strand at 356.356 kb on + strand at 356.357 kb on - strand at 356.382 kb on - strand at 356.391 kb on + strand at 356.398 kb on - strand at 356.494 kb on - strand, within BACOVA_02050 at 356.504 kb on + strand, within BACOVA_02050 at 356.540 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.611 kb on - strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.619 kb on - strand, within BACOVA_02050 at 356.625 kb on + strand, within BACOVA_02050 at 356.649 kb on - strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.775 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.842 kb on - strand, within BACOVA_02050 at 356.849 kb on + strand, within BACOVA_02050 at 356.850 kb on - strand, within BACOVA_02050 at 356.852 kb on + strand, within BACOVA_02050 at 356.917 kb on - strand, within BACOVA_02050 at 356.996 kb on - strand, within BACOVA_02050 at 356.997 kb on + strand, within BACOVA_02050 at 357.015 kb on - strand, within BACOVA_02050 at 357.030 kb on + strand, within BACOVA_02050 at 357.031 kb on - strand, within BACOVA_02050 at 357.075 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.130 kb on - strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.189 kb on + strand at 357.190 kb on - strand at 357.191 kb on + strand at 357.202 kb on - strand at 357.202 kb on - strand at 357.243 kb on - strand at 357.246 kb on + strand at 357.247 kb on - strand at 357.247 kb on - strand at 357.249 kb on - strand at 357.266 kb on + strand at 357.267 kb on - strand at 357.272 kb on - strand at 357.281 kb on + strand at 357.282 kb on - strand at 357.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 354,217 + -0.1 354,218 - +0.8 354,228 + +0.1 354,228 + -0.6 354,228 + +0.6 354,229 - +1.2 354,229 - -0.4 354,273 + -0.4 354,273 + +0.9 354,292 + -3.1 354,293 - -1.2 354,304 + +1.8 354,307 + -0.7 354,307 + -0.1 354,311 + -0.7 354,314 + +0.4 354,335 + +0.0 354,339 - +0.1 354,352 + -0.3 354,375 - BACOVA_02046 0.16 +1.6 354,404 - BACOVA_02046 0.37 +0.4 354,474 + BACOVA_02046 0.89 +0.4 354,474 + BACOVA_02046 0.89 -0.5 354,486 + +0.9 354,486 + +0.8 354,499 - +0.3 354,499 - -0.5 354,541 + +0.4 354,542 - -0.1 354,542 - +0.6 354,646 - +0.2 354,676 + -0.2 354,676 + +0.1 354,689 + +0.1 354,689 + +0.2 354,698 + +1.2 354,713 + +0.1 354,715 + -0.4 354,720 - +1.1 354,726 + -0.9 354,752 - +2.9 354,752 - +0.7 354,756 - +0.0 354,777 + -0.6 354,777 + -1.5 354,778 - -0.1 354,788 - +1.0 354,800 - -1.1 354,844 + -2.2 354,845 - +0.5 354,866 + +0.5 354,867 - -0.7 354,875 - -1.7 354,875 - +0.1 354,888 + +0.7 354,901 - +2.1 354,911 - -0.1 354,911 - +0.8 355,003 + +0.5 355,003 + +0.3 355,008 - -0.4 355,009 + +0.2 355,009 + -0.6 355,010 - +1.1 355,018 - BACOVA_02047 0.15 -0.0 355,020 - BACOVA_02047 0.16 -0.3 355,020 - BACOVA_02047 0.16 +1.2 355,049 + BACOVA_02047 0.39 +2.2 355,126 - -0.8 355,135 + -0.4 355,138 + +0.1 355,139 - -1.4 355,185 + -0.6 355,215 - -0.8 355,239 - -3.9 355,241 - -1.2 355,247 - -0.7 355,319 - BACOVA_02049 0.11 -0.4 355,356 - BACOVA_02049 0.14 -0.3 355,367 + BACOVA_02049 0.15 -0.7 355,368 - BACOVA_02049 0.15 -1.6 355,372 - BACOVA_02049 0.15 -1.9 355,381 - BACOVA_02049 0.16 -1.3 355,382 + BACOVA_02049 0.16 -0.9 355,382 + BACOVA_02049 0.16 -2.4 355,387 + BACOVA_02049 0.17 -3.1 355,411 + BACOVA_02049 0.19 -2.0 355,411 + BACOVA_02049 0.19 -0.6 355,411 + BACOVA_02049 0.19 -0.3 355,411 + BACOVA_02049 0.19 -2.2 355,412 - BACOVA_02049 0.19 -1.8 355,412 - BACOVA_02049 0.19 -2.2 355,432 + BACOVA_02049 0.21 -1.7 355,433 - BACOVA_02049 0.21 -2.0 355,442 + BACOVA_02049 0.22 -1.9 355,472 - BACOVA_02049 0.24 -1.2 355,479 - BACOVA_02049 0.25 -1.9 355,487 + BACOVA_02049 0.26 -0.9 355,504 + BACOVA_02049 0.27 -0.8 355,534 + BACOVA_02049 0.30 -1.5 355,536 + BACOVA_02049 0.30 -2.2 355,633 + BACOVA_02049 0.39 -0.9 355,634 - BACOVA_02049 0.39 -1.6 355,642 + BACOVA_02049 0.40 -1.1 355,664 - BACOVA_02049 0.42 -0.3 355,676 - BACOVA_02049 0.43 -2.8 355,678 + BACOVA_02049 0.43 -0.4 355,678 + BACOVA_02049 0.43 -2.4 355,691 + BACOVA_02049 0.44 +0.0 355,698 - BACOVA_02049 0.45 -1.6 355,714 - BACOVA_02049 0.46 -1.4 355,725 + BACOVA_02049 0.47 -1.7 355,726 - BACOVA_02049 0.47 -1.4 355,726 - BACOVA_02049 0.47 -1.6 355,726 - BACOVA_02049 0.47 -1.8 355,739 + BACOVA_02049 0.48 +0.2 355,739 + BACOVA_02049 0.48 -0.9 355,754 - BACOVA_02049 0.50 -1.3 355,795 + BACOVA_02049 0.53 -1.2 355,796 - BACOVA_02049 0.53 -2.2 355,799 - BACOVA_02049 0.54 -0.8 355,799 - BACOVA_02049 0.54 -3.0 355,801 + BACOVA_02049 0.54 -1.6 355,857 - BACOVA_02049 0.59 +0.6 355,862 - BACOVA_02049 0.59 -0.7 355,882 + BACOVA_02049 0.61 -2.8 355,883 - BACOVA_02049 0.61 -3.8 355,934 - BACOVA_02049 0.66 -0.9 355,934 - BACOVA_02049 0.66 -1.9 355,935 + BACOVA_02049 0.66 -0.8 355,936 - BACOVA_02049 0.66 -1.9 355,940 - BACOVA_02049 0.66 -1.1 355,940 - BACOVA_02049 0.66 -1.9 355,941 + BACOVA_02049 0.66 -0.9 355,942 - BACOVA_02049 0.66 -2.6 355,942 - BACOVA_02049 0.66 -1.9 355,973 + BACOVA_02049 0.69 -0.9 355,973 + BACOVA_02049 0.69 -1.4 355,973 + BACOVA_02049 0.69 -1.5 355,973 + BACOVA_02049 0.69 -0.4 355,974 - BACOVA_02049 0.69 -1.7 355,974 - BACOVA_02049 0.69 -2.1 355,974 - BACOVA_02049 0.69 -0.0 355,976 - BACOVA_02049 0.69 -1.2 355,976 - BACOVA_02049 0.69 -1.6 355,993 + BACOVA_02049 0.71 -2.7 355,997 + BACOVA_02049 0.71 -1.8 355,998 - BACOVA_02049 0.71 -1.3 355,998 - BACOVA_02049 0.71 -1.1 356,018 + BACOVA_02049 0.73 -1.6 356,018 + BACOVA_02049 0.73 -2.4 356,019 - BACOVA_02049 0.73 -1.7 356,020 + BACOVA_02049 0.73 -1.6 356,021 - BACOVA_02049 0.73 -0.8 356,023 + BACOVA_02049 0.74 -2.0 356,024 - BACOVA_02049 0.74 -3.2 356,026 - BACOVA_02049 0.74 -1.6 356,026 - BACOVA_02049 0.74 -1.3 356,026 - BACOVA_02049 0.74 -1.7 356,108 - BACOVA_02049 0.81 -2.9 356,126 - BACOVA_02049 0.83 -3.2 356,164 + BACOVA_02049 0.86 -1.3 356,193 - BACOVA_02049 0.89 -2.7 356,343 - +0.5 356,343 - -0.6 356,347 - -0.3 356,347 - -1.9 356,356 + -1.2 356,356 + -0.3 356,357 - +0.2 356,382 - +0.2 356,391 + -1.4 356,398 - +0.6 356,494 - BACOVA_02050 0.15 -0.4 356,504 + BACOVA_02050 0.16 +0.1 356,540 + BACOVA_02050 0.20 -1.3 356,544 + BACOVA_02050 0.20 +0.3 356,544 + BACOVA_02050 0.20 +0.1 356,544 + BACOVA_02050 0.20 -0.1 356,610 + BACOVA_02050 0.27 +0.3 356,610 + BACOVA_02050 0.27 -1.4 356,611 - BACOVA_02050 0.28 +0.0 356,614 + BACOVA_02050 0.28 +0.2 356,614 + BACOVA_02050 0.28 -0.6 356,619 - BACOVA_02050 0.28 +0.6 356,625 + BACOVA_02050 0.29 -1.1 356,649 - BACOVA_02050 0.32 +1.1 356,721 + BACOVA_02050 0.40 -0.2 356,721 + BACOVA_02050 0.40 -0.4 356,721 + BACOVA_02050 0.40 -0.9 356,775 + BACOVA_02050 0.45 +0.4 356,809 + BACOVA_02050 0.49 +0.5 356,809 + BACOVA_02050 0.49 -0.6 356,810 - BACOVA_02050 0.49 -0.9 356,810 - BACOVA_02050 0.49 +0.7 356,842 - BACOVA_02050 0.53 -1.2 356,849 + BACOVA_02050 0.54 +0.3 356,850 - BACOVA_02050 0.54 -1.1 356,852 + BACOVA_02050 0.54 -0.7 356,917 - BACOVA_02050 0.61 -0.7 356,996 - BACOVA_02050 0.70 +0.8 356,997 + BACOVA_02050 0.70 -1.9 357,015 - BACOVA_02050 0.72 +0.5 357,030 + BACOVA_02050 0.73 -0.9 357,031 - BACOVA_02050 0.73 +1.0 357,075 + BACOVA_02050 0.78 +0.6 357,098 + BACOVA_02050 0.81 -2.8 357,098 + BACOVA_02050 0.81 -2.9 357,129 + BACOVA_02050 0.84 -0.6 357,129 + BACOVA_02050 0.84 -1.7 357,130 - BACOVA_02050 0.84 +1.0 357,152 + BACOVA_02050 0.87 -1.6 357,152 + BACOVA_02050 0.87 -0.2 357,189 + -1.2 357,190 - +0.7 357,191 + -1.3 357,202 - +1.4 357,202 - +0.0 357,243 - +0.3 357,246 + -2.2 357,247 - +1.0 357,247 - +0.5 357,249 - +0.4 357,266 + -2.4 357,267 - +0.7 357,272 - +0.7 357,281 + +0.7 357,282 - -0.7 357,282 - +0.3
Or see this region's nucleotide sequence