Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02048

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02045 and BACOVA_02046 are separated by 137 nucleotidesBACOVA_02046 and BACOVA_02047 are separated by 510 nucleotidesBACOVA_02047 and BACOVA_02048 overlap by 68 nucleotidesBACOVA_02048 and BACOVA_02049 are separated by 58 nucleotides BACOVA_02045: BACOVA_02045 - TonB-linked outer membrane protein, SusC/RagA family, at 350,851 to 354,216 _02045 BACOVA_02046: BACOVA_02046 - hypothetical protein, at 354,354 to 354,488 _02046 BACOVA_02047: BACOVA_02047 - hypothetical protein, at 354,999 to 355,127 _02047 BACOVA_02048: BACOVA_02048 - hypothetical protein, at 355,060 to 355,140 _02048 BACOVA_02049: BACOVA_02049 - sugar-binding domain protein, at 355,199 to 356,317 _02049 Position (kb) 355 356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 354.092 kb on + strandat 354.093 kb on - strandat 354.093 kb on - strandat 354.097 kb on + strandat 354.098 kb on - strandat 354.159 kb on + strandat 354.189 kb on - strandat 354.217 kb on + strandat 354.218 kb on - strandat 354.228 kb on + strandat 354.228 kb on + strandat 354.228 kb on + strandat 354.229 kb on - strandat 354.229 kb on - strandat 354.273 kb on + strandat 354.273 kb on + strandat 354.292 kb on + strandat 354.293 kb on - strandat 354.304 kb on + strandat 354.307 kb on + strandat 354.307 kb on + strandat 354.311 kb on + strandat 354.314 kb on + strandat 354.335 kb on + strandat 354.339 kb on - strandat 354.352 kb on + strandat 354.375 kb on - strand, within BACOVA_02046at 354.404 kb on - strand, within BACOVA_02046at 354.474 kb on + strand, within BACOVA_02046at 354.474 kb on + strand, within BACOVA_02046at 354.486 kb on + strandat 354.486 kb on + strandat 354.499 kb on - strandat 354.499 kb on - strandat 354.541 kb on + strandat 354.542 kb on - strandat 354.542 kb on - strandat 354.646 kb on - strandat 354.676 kb on + strandat 354.676 kb on + strandat 354.689 kb on + strandat 354.689 kb on + strandat 354.698 kb on + strandat 354.713 kb on + strandat 354.715 kb on + strandat 354.720 kb on - strandat 354.726 kb on + strandat 354.752 kb on - strandat 354.752 kb on - strandat 354.756 kb on - strandat 354.777 kb on + strandat 354.777 kb on + strandat 354.778 kb on - strandat 354.788 kb on - strandat 354.800 kb on - strandat 354.844 kb on + strandat 354.845 kb on - strandat 354.866 kb on + strandat 354.867 kb on - strandat 354.875 kb on - strandat 354.875 kb on - strandat 354.888 kb on + strandat 354.901 kb on - strandat 354.911 kb on - strandat 354.911 kb on - strandat 355.003 kb on + strandat 355.003 kb on + strandat 355.008 kb on - strandat 355.009 kb on + strandat 355.009 kb on + strandat 355.010 kb on - strandat 355.018 kb on - strand, within BACOVA_02047at 355.020 kb on - strand, within BACOVA_02047at 355.020 kb on - strand, within BACOVA_02047at 355.049 kb on + strand, within BACOVA_02047at 355.126 kb on - strandat 355.135 kb on + strandat 355.138 kb on + strandat 355.139 kb on - strandat 355.185 kb on + strandat 355.215 kb on - strandat 355.239 kb on - strandat 355.241 kb on - strandat 355.247 kb on - strandat 355.319 kb on - strand, within BACOVA_02049at 355.356 kb on - strand, within BACOVA_02049at 355.367 kb on + strand, within BACOVA_02049at 355.368 kb on - strand, within BACOVA_02049at 355.372 kb on - strand, within BACOVA_02049at 355.381 kb on - strand, within BACOVA_02049at 355.382 kb on + strand, within BACOVA_02049at 355.382 kb on + strand, within BACOVA_02049at 355.387 kb on + strand, within BACOVA_02049at 355.411 kb on + strand, within BACOVA_02049at 355.411 kb on + strand, within BACOVA_02049at 355.411 kb on + strand, within BACOVA_02049at 355.411 kb on + strand, within BACOVA_02049at 355.412 kb on - strand, within BACOVA_02049at 355.412 kb on - strand, within BACOVA_02049at 355.432 kb on + strand, within BACOVA_02049at 355.433 kb on - strand, within BACOVA_02049at 355.442 kb on + strand, within BACOVA_02049at 355.472 kb on - strand, within BACOVA_02049at 355.479 kb on - strand, within BACOVA_02049at 355.487 kb on + strand, within BACOVA_02049at 355.504 kb on + strand, within BACOVA_02049at 355.534 kb on + strand, within BACOVA_02049at 355.536 kb on + strand, within BACOVA_02049at 355.633 kb on + strand, within BACOVA_02049at 355.634 kb on - strand, within BACOVA_02049at 355.642 kb on + strand, within BACOVA_02049at 355.664 kb on - strand, within BACOVA_02049at 355.676 kb on - strand, within BACOVA_02049at 355.678 kb on + strand, within BACOVA_02049at 355.678 kb on + strand, within BACOVA_02049at 355.691 kb on + strand, within BACOVA_02049at 355.698 kb on - strand, within BACOVA_02049at 355.714 kb on - strand, within BACOVA_02049at 355.725 kb on + strand, within BACOVA_02049at 355.726 kb on - strand, within BACOVA_02049at 355.726 kb on - strand, within BACOVA_02049at 355.726 kb on - strand, within BACOVA_02049at 355.739 kb on + strand, within BACOVA_02049at 355.739 kb on + strand, within BACOVA_02049at 355.754 kb on - strand, within BACOVA_02049at 355.795 kb on + strand, within BACOVA_02049at 355.796 kb on - strand, within BACOVA_02049at 355.799 kb on - strand, within BACOVA_02049at 355.799 kb on - strand, within BACOVA_02049at 355.801 kb on + strand, within BACOVA_02049at 355.857 kb on - strand, within BACOVA_02049at 355.862 kb on - strand, within BACOVA_02049at 355.882 kb on + strand, within BACOVA_02049at 355.883 kb on - strand, within BACOVA_02049at 355.934 kb on - strand, within BACOVA_02049at 355.934 kb on - strand, within BACOVA_02049at 355.935 kb on + strand, within BACOVA_02049at 355.936 kb on - strand, within BACOVA_02049at 355.940 kb on - strand, within BACOVA_02049at 355.940 kb on - strand, within BACOVA_02049at 355.941 kb on + strand, within BACOVA_02049at 355.942 kb on - strand, within BACOVA_02049at 355.942 kb on - strand, within BACOVA_02049at 355.973 kb on + strand, within BACOVA_02049at 355.973 kb on + strand, within BACOVA_02049at 355.973 kb on + strand, within BACOVA_02049at 355.973 kb on + strand, within BACOVA_02049at 355.974 kb on - strand, within BACOVA_02049at 355.974 kb on - strand, within BACOVA_02049at 355.974 kb on - strand, within BACOVA_02049at 355.976 kb on - strand, within BACOVA_02049at 355.976 kb on - strand, within BACOVA_02049at 355.993 kb on + strand, within BACOVA_02049at 355.997 kb on + strand, within BACOVA_02049at 355.998 kb on - strand, within BACOVA_02049at 355.998 kb on - strand, within BACOVA_02049at 356.018 kb on + strand, within BACOVA_02049at 356.018 kb on + strand, within BACOVA_02049at 356.019 kb on - strand, within BACOVA_02049at 356.020 kb on + strand, within BACOVA_02049at 356.021 kb on - strand, within BACOVA_02049at 356.023 kb on + strand, within BACOVA_02049at 356.024 kb on - strand, within BACOVA_02049at 356.026 kb on - strand, within BACOVA_02049at 356.026 kb on - strand, within BACOVA_02049at 356.026 kb on - strand, within BACOVA_02049at 356.108 kb on - strand, within BACOVA_02049at 356.126 kb on - strand, within BACOVA_02049

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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354,092 + +0.1
354,093 - +0.6
354,093 - +0.3
354,097 + +0.3
354,098 - -0.4
354,159 + +1.1
354,189 - +1.6
354,217 + -0.1
354,218 - +0.8
354,228 + +0.1
354,228 + -0.6
354,228 + +0.6
354,229 - +1.2
354,229 - -0.4
354,273 + -0.4
354,273 + +0.9
354,292 + -3.1
354,293 - -1.2
354,304 + +1.8
354,307 + -0.7
354,307 + -0.1
354,311 + -0.7
354,314 + +0.4
354,335 + +0.0
354,339 - +0.1
354,352 + -0.3
354,375 - BACOVA_02046 0.16 +1.6
354,404 - BACOVA_02046 0.37 +0.4
354,474 + BACOVA_02046 0.89 +0.4
354,474 + BACOVA_02046 0.89 -0.5
354,486 + +0.9
354,486 + +0.8
354,499 - +0.3
354,499 - -0.5
354,541 + +0.4
354,542 - -0.1
354,542 - +0.6
354,646 - +0.2
354,676 + -0.2
354,676 + +0.1
354,689 + +0.1
354,689 + +0.2
354,698 + +1.2
354,713 + +0.1
354,715 + -0.4
354,720 - +1.1
354,726 + -0.9
354,752 - +2.9
354,752 - +0.7
354,756 - +0.0
354,777 + -0.6
354,777 + -1.5
354,778 - -0.1
354,788 - +1.0
354,800 - -1.1
354,844 + -2.2
354,845 - +0.5
354,866 + +0.5
354,867 - -0.7
354,875 - -1.7
354,875 - +0.1
354,888 + +0.7
354,901 - +2.1
354,911 - -0.1
354,911 - +0.8
355,003 + +0.5
355,003 + +0.3
355,008 - -0.4
355,009 + +0.2
355,009 + -0.6
355,010 - +1.1
355,018 - BACOVA_02047 0.15 -0.0
355,020 - BACOVA_02047 0.16 -0.3
355,020 - BACOVA_02047 0.16 +1.2
355,049 + BACOVA_02047 0.39 +2.2
355,126 - -0.8
355,135 + -0.4
355,138 + +0.1
355,139 - -1.4
355,185 + -0.6
355,215 - -0.8
355,239 - -3.9
355,241 - -1.2
355,247 - -0.7
355,319 - BACOVA_02049 0.11 -0.4
355,356 - BACOVA_02049 0.14 -0.3
355,367 + BACOVA_02049 0.15 -0.7
355,368 - BACOVA_02049 0.15 -1.6
355,372 - BACOVA_02049 0.15 -1.9
355,381 - BACOVA_02049 0.16 -1.3
355,382 + BACOVA_02049 0.16 -0.9
355,382 + BACOVA_02049 0.16 -2.4
355,387 + BACOVA_02049 0.17 -3.1
355,411 + BACOVA_02049 0.19 -2.0
355,411 + BACOVA_02049 0.19 -0.6
355,411 + BACOVA_02049 0.19 -0.3
355,411 + BACOVA_02049 0.19 -2.2
355,412 - BACOVA_02049 0.19 -1.8
355,412 - BACOVA_02049 0.19 -2.2
355,432 + BACOVA_02049 0.21 -1.7
355,433 - BACOVA_02049 0.21 -2.0
355,442 + BACOVA_02049 0.22 -1.9
355,472 - BACOVA_02049 0.24 -1.2
355,479 - BACOVA_02049 0.25 -1.9
355,487 + BACOVA_02049 0.26 -0.9
355,504 + BACOVA_02049 0.27 -0.8
355,534 + BACOVA_02049 0.30 -1.5
355,536 + BACOVA_02049 0.30 -2.2
355,633 + BACOVA_02049 0.39 -0.9
355,634 - BACOVA_02049 0.39 -1.6
355,642 + BACOVA_02049 0.40 -1.1
355,664 - BACOVA_02049 0.42 -0.3
355,676 - BACOVA_02049 0.43 -2.8
355,678 + BACOVA_02049 0.43 -0.4
355,678 + BACOVA_02049 0.43 -2.4
355,691 + BACOVA_02049 0.44 +0.0
355,698 - BACOVA_02049 0.45 -1.6
355,714 - BACOVA_02049 0.46 -1.4
355,725 + BACOVA_02049 0.47 -1.7
355,726 - BACOVA_02049 0.47 -1.4
355,726 - BACOVA_02049 0.47 -1.6
355,726 - BACOVA_02049 0.47 -1.8
355,739 + BACOVA_02049 0.48 +0.2
355,739 + BACOVA_02049 0.48 -0.9
355,754 - BACOVA_02049 0.50 -1.3
355,795 + BACOVA_02049 0.53 -1.2
355,796 - BACOVA_02049 0.53 -2.2
355,799 - BACOVA_02049 0.54 -0.8
355,799 - BACOVA_02049 0.54 -3.0
355,801 + BACOVA_02049 0.54 -1.6
355,857 - BACOVA_02049 0.59 +0.6
355,862 - BACOVA_02049 0.59 -0.7
355,882 + BACOVA_02049 0.61 -2.8
355,883 - BACOVA_02049 0.61 -3.8
355,934 - BACOVA_02049 0.66 -0.9
355,934 - BACOVA_02049 0.66 -1.9
355,935 + BACOVA_02049 0.66 -0.8
355,936 - BACOVA_02049 0.66 -1.9
355,940 - BACOVA_02049 0.66 -1.1
355,940 - BACOVA_02049 0.66 -1.9
355,941 + BACOVA_02049 0.66 -0.9
355,942 - BACOVA_02049 0.66 -2.6
355,942 - BACOVA_02049 0.66 -1.9
355,973 + BACOVA_02049 0.69 -0.9
355,973 + BACOVA_02049 0.69 -1.4
355,973 + BACOVA_02049 0.69 -1.5
355,973 + BACOVA_02049 0.69 -0.4
355,974 - BACOVA_02049 0.69 -1.7
355,974 - BACOVA_02049 0.69 -2.1
355,974 - BACOVA_02049 0.69 -0.0
355,976 - BACOVA_02049 0.69 -1.2
355,976 - BACOVA_02049 0.69 -1.6
355,993 + BACOVA_02049 0.71 -2.7
355,997 + BACOVA_02049 0.71 -1.8
355,998 - BACOVA_02049 0.71 -1.3
355,998 - BACOVA_02049 0.71 -1.1
356,018 + BACOVA_02049 0.73 -1.6
356,018 + BACOVA_02049 0.73 -2.4
356,019 - BACOVA_02049 0.73 -1.7
356,020 + BACOVA_02049 0.73 -1.6
356,021 - BACOVA_02049 0.73 -0.8
356,023 + BACOVA_02049 0.74 -2.0
356,024 - BACOVA_02049 0.74 -3.2
356,026 - BACOVA_02049 0.74 -1.6
356,026 - BACOVA_02049 0.74 -1.3
356,026 - BACOVA_02049 0.74 -1.7
356,108 - BACOVA_02049 0.81 -2.9
356,126 - BACOVA_02049 0.83 -3.2

Or see this region's nucleotide sequence