Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01044 and BACOVA_01045 are separated by 51 nucleotides BACOVA_01045 and BACOVA_01046 are separated by 10 nucleotides BACOVA_01046 and BACOVA_01047 are separated by 28 nucleotides BACOVA_01047 and BACOVA_01048 are separated by 85 nucleotides BACOVA_01048 and BACOVA_01049 are separated by 97 nucleotides BACOVA_01049 and BACOVA_01050 are separated by 17 nucleotides
BACOVA_01044: BACOVA_01044 - putative translation elongation factor Tu, at 255,517 to 256,701
_01044
BACOVA_01045: BACOVA_01045 - tRNA-Thr, at 256,753 to 256,824
_01045
BACOVA_01046: BACOVA_01046 - tRNA-Gly, at 256,835 to 256,907
_01046
BACOVA_01047: BACOVA_01047 - tRNA-Tyr, at 256,936 to 257,018
_01047
BACOVA_01048: BACOVA_01048 - tRNA-Thr, at 257,104 to 257,177
_01048
BACOVA_01049: BACOVA_01049 - hypothetical protein, at 257,275 to 257,574
_01049
BACOVA_01050: BACOVA_01050 - site-specific recombinase, phage integrase family/ribosomal subunit interface protein, at 257,592 to 258,473
_01050
Position (kb) 257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.741 kb on - strand at 256.741 kb on - strand at 256.750 kb on - strand at 256.819 kb on - strand at 257.236 kb on - strand at 257.300 kb on + strand at 257.300 kb on + strand at 257.301 kb on - strand at 257.304 kb on + strand at 257.317 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.359 kb on - strand, within BACOVA_01049 at 257.379 kb on - strand, within BACOVA_01049 at 257.402 kb on - strand, within BACOVA_01049 at 257.443 kb on + strand, within BACOVA_01049 at 257.453 kb on - strand, within BACOVA_01049 at 257.464 kb on + strand, within BACOVA_01049 at 257.475 kb on + strand, within BACOVA_01049 at 257.575 kb on - strand at 257.578 kb on + strand at 257.616 kb on - strand at 257.616 kb on - strand at 257.745 kb on - strand, within BACOVA_01050 at 257.814 kb on - strand, within BACOVA_01050
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 256,741 - -2.0 256,741 - -0.1 256,750 - -1.3 256,819 - -1.0 257,236 - -0.9 257,300 + -0.6 257,300 + -2.0 257,301 - +0.3 257,304 + -0.6 257,317 + BACOVA_01049 0.14 -1.7 257,358 + BACOVA_01049 0.28 -0.6 257,358 + BACOVA_01049 0.28 +0.8 257,359 - BACOVA_01049 0.28 -2.1 257,379 - BACOVA_01049 0.35 +0.6 257,402 - BACOVA_01049 0.42 +0.1 257,443 + BACOVA_01049 0.56 -0.9 257,453 - BACOVA_01049 0.59 -1.9 257,464 + BACOVA_01049 0.63 -1.2 257,475 + BACOVA_01049 0.67 +0.2 257,575 - -0.9 257,578 + +0.0 257,616 - +0.9 257,616 - -1.3 257,745 - BACOVA_01050 0.17 -3.6 257,814 - BACOVA_01050 0.25 -0.6
Or see this region's nucleotide sequence