Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00908

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00907 and BACOVA_00908 are separated by 214 nucleotidesBACOVA_00908 and BACOVA_00909 are separated by 152 nucleotides BACOVA_00907: BACOVA_00907 - glycosyl hydrolase family 76, at 40,063 to 41,226 _00907 BACOVA_00908: BACOVA_00908 - hypothetical protein, at 41,441 to 43,057 _00908 BACOVA_00909: BACOVA_00909 - kinase, PfkB family, at 43,210 to 44,130 _00909 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 40.467 kb on + strand, within BACOVA_00907at 40.469 kb on + strand, within BACOVA_00907at 40.522 kb on + strand, within BACOVA_00907at 40.565 kb on + strand, within BACOVA_00907at 40.568 kb on - strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.615 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.656 kb on + strand, within BACOVA_00907at 40.722 kb on + strand, within BACOVA_00907at 40.723 kb on - strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.795 kb on - strand, within BACOVA_00907at 40.804 kb on + strand, within BACOVA_00907at 40.807 kb on + strand, within BACOVA_00907at 40.819 kb on - strand, within BACOVA_00907at 40.860 kb on - strand, within BACOVA_00907at 40.918 kb on + strand, within BACOVA_00907at 40.942 kb on - strand, within BACOVA_00907at 40.987 kb on + strand, within BACOVA_00907at 41.013 kb on - strand, within BACOVA_00907at 41.019 kb on - strand, within BACOVA_00907at 41.020 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.057 kb on + strand, within BACOVA_00907at 41.067 kb on + strand, within BACOVA_00907at 41.101 kb on + strand, within BACOVA_00907at 41.123 kb on + strandat 41.124 kb on - strandat 41.170 kb on - strandat 41.209 kb on - strandat 41.212 kb on + strandat 41.213 kb on - strandat 41.249 kb on + strandat 41.257 kb on + strandat 41.260 kb on + strandat 41.284 kb on + strandat 41.308 kb on + strandat 41.309 kb on - strandat 41.347 kb on - strandat 41.431 kb on + strandat 41.442 kb on + strandat 41.533 kb on + strandat 41.533 kb on + strandat 41.535 kb on + strandat 41.536 kb on - strandat 41.553 kb on + strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.559 kb on - strandat 41.618 kb on + strand, within BACOVA_00908at 41.630 kb on + strand, within BACOVA_00908at 41.734 kb on - strand, within BACOVA_00908at 41.802 kb on - strand, within BACOVA_00908at 41.840 kb on - strand, within BACOVA_00908at 41.861 kb on - strand, within BACOVA_00908at 41.862 kb on + strand, within BACOVA_00908at 41.862 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.872 kb on - strand, within BACOVA_00908at 41.872 kb on - strand, within BACOVA_00908at 41.882 kb on - strand, within BACOVA_00908at 41.884 kb on - strand, within BACOVA_00908at 41.896 kb on - strand, within BACOVA_00908at 41.911 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.977 kb on + strand, within BACOVA_00908at 42.029 kb on + strand, within BACOVA_00908at 42.050 kb on + strand, within BACOVA_00908at 42.113 kb on - strand, within BACOVA_00908at 42.116 kb on + strand, within BACOVA_00908at 42.117 kb on - strand, within BACOVA_00908at 42.126 kb on + strand, within BACOVA_00908at 42.127 kb on - strand, within BACOVA_00908at 42.127 kb on - strand, within BACOVA_00908at 42.130 kb on + strand, within BACOVA_00908at 42.130 kb on + strand, within BACOVA_00908at 42.131 kb on - strand, within BACOVA_00908at 42.164 kb on - strand, within BACOVA_00908at 42.167 kb on + strand, within BACOVA_00908at 42.167 kb on + strand, within BACOVA_00908at 42.168 kb on - strand, within BACOVA_00908at 42.199 kb on - strand, within BACOVA_00908at 42.202 kb on + strand, within BACOVA_00908at 42.203 kb on - strand, within BACOVA_00908at 42.236 kb on + strand, within BACOVA_00908at 42.237 kb on - strand, within BACOVA_00908at 42.245 kb on + strand, within BACOVA_00908at 42.248 kb on + strand, within BACOVA_00908at 42.248 kb on + strand, within BACOVA_00908at 42.271 kb on + strand, within BACOVA_00908at 42.281 kb on + strand, within BACOVA_00908at 42.282 kb on - strand, within BACOVA_00908at 42.284 kb on + strand, within BACOVA_00908at 42.284 kb on + strand, within BACOVA_00908at 42.285 kb on - strand, within BACOVA_00908at 42.302 kb on + strand, within BACOVA_00908at 42.316 kb on + strand, within BACOVA_00908at 42.317 kb on - strand, within BACOVA_00908at 42.322 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.367 kb on - strand, within BACOVA_00908at 42.367 kb on - strand, within BACOVA_00908at 42.370 kb on + strand, within BACOVA_00908at 42.372 kb on - strand, within BACOVA_00908at 42.393 kb on + strand, within BACOVA_00908at 42.400 kb on + strand, within BACOVA_00908at 42.400 kb on + strand, within BACOVA_00908at 42.401 kb on - strand, within BACOVA_00908at 42.403 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.433 kb on + strand, within BACOVA_00908at 42.451 kb on + strand, within BACOVA_00908at 42.477 kb on - strand, within BACOVA_00908at 42.488 kb on + strand, within BACOVA_00908at 42.534 kb on - strand, within BACOVA_00908at 42.543 kb on - strand, within BACOVA_00908at 42.543 kb on - strand, within BACOVA_00908at 42.600 kb on + strand, within BACOVA_00908at 42.647 kb on + strand, within BACOVA_00908at 42.647 kb on + strand, within BACOVA_00908at 42.648 kb on - strand, within BACOVA_00908at 42.673 kb on + strand, within BACOVA_00908at 42.760 kb on + strand, within BACOVA_00908at 42.761 kb on - strand, within BACOVA_00908at 42.795 kb on + strand, within BACOVA_00908at 42.800 kb on + strand, within BACOVA_00908at 42.890 kb on + strand, within BACOVA_00908at 42.891 kb on - strand, within BACOVA_00908at 42.908 kb on + strandat 42.909 kb on - strandat 42.932 kb on - strandat 42.933 kb on + strandat 42.933 kb on + strandat 42.971 kb on + strandat 43.007 kb on + strandat 43.021 kb on + strandat 43.028 kb on + strandat 43.029 kb on - strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.035 kb on - strandat 43.041 kb on - strandat 43.059 kb on + strandat 43.062 kb on + strandat 43.063 kb on - strandat 43.066 kb on + strandat 43.066 kb on + strandat 43.067 kb on - strandat 43.102 kb on - strandat 43.121 kb on + strandat 43.135 kb on + strandat 43.181 kb on + strandat 43.182 kb on - strandat 43.182 kb on - strandat 43.185 kb on + strandat 43.185 kb on + strandat 43.186 kb on - strandat 43.186 kb on - strandat 43.187 kb on + strandat 43.199 kb on + strandat 43.298 kb on - strandat 43.330 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.353 kb on - strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.407 kb on + strand, within BACOVA_00909at 43.408 kb on - strand, within BACOVA_00909at 43.444 kb on - strand, within BACOVA_00909at 43.455 kb on + strand, within BACOVA_00909at 43.468 kb on + strand, within BACOVA_00909at 43.521 kb on + strand, within BACOVA_00909at 43.530 kb on - strand, within BACOVA_00909at 43.540 kb on + strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.555 kb on - strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.679 kb on + strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.711 kb on + strand, within BACOVA_00909at 43.712 kb on - strand, within BACOVA_00909at 43.757 kb on + strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.836 kb on - strand, within BACOVA_00909at 43.844 kb on + strand, within BACOVA_00909at 43.883 kb on - strand, within BACOVA_00909at 43.907 kb on - strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.913 kb on - strand, within BACOVA_00909at 43.929 kb on + strand, within BACOVA_00909at 43.960 kb on - strand, within BACOVA_00909at 44.006 kb on - strand, within BACOVA_00909at 44.032 kb on - strand, within BACOVA_00909at 44.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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40,467 + BACOVA_00907 0.35 +0.1
40,469 + BACOVA_00907 0.35 -1.0
40,522 + BACOVA_00907 0.39 +0.0
40,565 + BACOVA_00907 0.43 -0.6
40,568 - BACOVA_00907 0.43 +0.4
40,585 + BACOVA_00907 0.45 -0.7
40,585 + BACOVA_00907 0.45 -1.6
40,615 + BACOVA_00907 0.47 -1.1
40,647 + BACOVA_00907 0.50 +0.8
40,647 + BACOVA_00907 0.50 -1.7
40,656 + BACOVA_00907 0.51 -0.7
40,722 + BACOVA_00907 0.57 +1.6
40,723 - BACOVA_00907 0.57 +0.3
40,760 + BACOVA_00907 0.60 +0.8
40,760 + BACOVA_00907 0.60 +0.5
40,795 - BACOVA_00907 0.63 +0.7
40,804 + BACOVA_00907 0.64 +0.7
40,807 + BACOVA_00907 0.64 -0.1
40,819 - BACOVA_00907 0.65 -0.8
40,860 - BACOVA_00907 0.68 +0.6
40,918 + BACOVA_00907 0.73 +0.2
40,942 - BACOVA_00907 0.76 -1.2
40,987 + BACOVA_00907 0.79 -0.9
41,013 - BACOVA_00907 0.82 +0.2
41,019 - BACOVA_00907 0.82 -0.5
41,020 + BACOVA_00907 0.82 -0.5
41,053 + BACOVA_00907 0.85 +0.1
41,053 + BACOVA_00907 0.85 +0.3
41,053 + BACOVA_00907 0.85 +0.8
41,057 + BACOVA_00907 0.85 -1.5
41,067 + BACOVA_00907 0.86 +1.5
41,101 + BACOVA_00907 0.89 -0.7
41,123 + +0.3
41,124 - +0.6
41,170 - +1.3
41,209 - +0.5
41,212 + +0.6
41,213 - -1.0
41,249 + +1.0
41,257 + -0.1
41,260 + +0.5
41,284 + +0.7
41,308 + -1.2
41,309 - -0.6
41,347 - -0.7
41,431 + +0.3
41,442 + -1.6
41,533 + -0.7
41,533 + +1.0
41,535 + -4.1
41,536 - +0.6
41,553 + -1.1
41,554 - -1.4
41,554 - +0.8
41,554 - +0.1
41,554 - -0.2
41,554 - -1.0
41,559 - -0.3
41,618 + BACOVA_00908 0.11 +0.2
41,630 + BACOVA_00908 0.12 -1.2
41,734 - BACOVA_00908 0.18 +0.3
41,802 - BACOVA_00908 0.22 +1.1
41,840 - BACOVA_00908 0.25 -0.6
41,861 - BACOVA_00908 0.26 +0.9
41,862 + BACOVA_00908 0.26 -1.0
41,862 + BACOVA_00908 0.26 -0.1
41,871 + BACOVA_00908 0.27 +0.9
41,871 + BACOVA_00908 0.27 +0.7
41,871 + BACOVA_00908 0.27 +0.2
41,872 - BACOVA_00908 0.27 +0.2
41,872 - BACOVA_00908 0.27 +0.3
41,882 - BACOVA_00908 0.27 +0.3
41,884 - BACOVA_00908 0.27 -0.9
41,896 - BACOVA_00908 0.28 +0.0
41,911 + BACOVA_00908 0.29 +1.1
41,917 + BACOVA_00908 0.29 -1.0
41,917 + BACOVA_00908 0.29 -1.5
41,917 + BACOVA_00908 0.29 +0.1
41,977 + BACOVA_00908 0.33 +0.3
42,029 + BACOVA_00908 0.36 +0.8
42,050 + BACOVA_00908 0.38 -0.1
42,113 - BACOVA_00908 0.42 -1.2
42,116 + BACOVA_00908 0.42 +0.2
42,117 - BACOVA_00908 0.42 +0.7
42,126 + BACOVA_00908 0.42 -0.7
42,127 - BACOVA_00908 0.42 -0.5
42,127 - BACOVA_00908 0.42 -0.5
42,130 + BACOVA_00908 0.43 -2.8
42,130 + BACOVA_00908 0.43 +1.1
42,131 - BACOVA_00908 0.43 -0.0
42,164 - BACOVA_00908 0.45 +0.0
42,167 + BACOVA_00908 0.45 +0.5
42,167 + BACOVA_00908 0.45 -0.2
42,168 - BACOVA_00908 0.45 -0.0
42,199 - BACOVA_00908 0.47 +0.4
42,202 + BACOVA_00908 0.47 -0.4
42,203 - BACOVA_00908 0.47 -1.2
42,236 + BACOVA_00908 0.49 -0.3
42,237 - BACOVA_00908 0.49 -0.4
42,245 + BACOVA_00908 0.50 +0.7
42,248 + BACOVA_00908 0.50 -0.6
42,248 + BACOVA_00908 0.50 -0.8
42,271 + BACOVA_00908 0.51 -0.3
42,281 + BACOVA_00908 0.52 +0.3
42,282 - BACOVA_00908 0.52 -1.9
42,284 + BACOVA_00908 0.52 +0.1
42,284 + BACOVA_00908 0.52 -1.6
42,285 - BACOVA_00908 0.52 +0.6
42,302 + BACOVA_00908 0.53 +0.4
42,316 + BACOVA_00908 0.54 +1.0
42,317 - BACOVA_00908 0.54 +0.2
42,322 + BACOVA_00908 0.54 +0.5
42,366 + BACOVA_00908 0.57 +0.6
42,366 + BACOVA_00908 0.57 +0.6
42,366 + BACOVA_00908 0.57 +0.2
42,367 - BACOVA_00908 0.57 -1.1
42,367 - BACOVA_00908 0.57 +0.5
42,370 + BACOVA_00908 0.57 -0.7
42,372 - BACOVA_00908 0.58 +1.4
42,393 + BACOVA_00908 0.59 +1.1
42,400 + BACOVA_00908 0.59 -1.1
42,400 + BACOVA_00908 0.59 +0.2
42,401 - BACOVA_00908 0.59 -0.8
42,403 - BACOVA_00908 0.59 +0.3
42,428 - BACOVA_00908 0.61 +0.4
42,428 - BACOVA_00908 0.61 -0.1
42,428 - BACOVA_00908 0.61 -1.0
42,428 - BACOVA_00908 0.61 -0.8
42,433 + BACOVA_00908 0.61 +2.5
42,451 + BACOVA_00908 0.62 -0.7
42,477 - BACOVA_00908 0.64 -1.9
42,488 + BACOVA_00908 0.65 -0.2
42,534 - BACOVA_00908 0.68 +0.9
42,543 - BACOVA_00908 0.68 -0.7
42,543 - BACOVA_00908 0.68 -1.2
42,600 + BACOVA_00908 0.72 -1.1
42,647 + BACOVA_00908 0.75 +0.1
42,647 + BACOVA_00908 0.75 +0.1
42,648 - BACOVA_00908 0.75 -1.0
42,673 + BACOVA_00908 0.76 -1.4
42,760 + BACOVA_00908 0.82 -0.0
42,761 - BACOVA_00908 0.82 -0.6
42,795 + BACOVA_00908 0.84 +0.1
42,800 + BACOVA_00908 0.84 +0.3
42,890 + BACOVA_00908 0.90 -0.2
42,891 - BACOVA_00908 0.90 -0.2
42,908 + +0.2
42,909 - -0.8
42,932 - -1.0
42,933 + -0.5
42,933 + +0.9
42,971 + +0.3
43,007 + +0.8
43,021 + -0.3
43,028 + -0.7
43,029 - -0.3
43,034 + +0.2
43,034 + -1.7
43,035 - -1.0
43,041 - -0.8
43,059 + -0.7
43,062 + -0.5
43,063 - -0.3
43,066 + +2.0
43,066 + +0.2
43,067 - -0.0
43,102 - +1.3
43,121 + +1.2
43,135 + -1.3
43,181 + -1.6
43,182 - +0.5
43,182 - -1.0
43,185 + -0.5
43,185 + +0.3
43,186 - -0.1
43,186 - +0.7
43,187 + -2.4
43,199 + +1.6
43,298 - -0.9
43,330 + BACOVA_00909 0.13 -0.4
43,352 + BACOVA_00909 0.15 -0.3
43,352 + BACOVA_00909 0.15 +0.8
43,353 - BACOVA_00909 0.16 +0.2
43,404 + BACOVA_00909 0.21 +0.1
43,404 + BACOVA_00909 0.21 +0.0
43,407 + BACOVA_00909 0.21 +0.6
43,408 - BACOVA_00909 0.21 -0.2
43,444 - BACOVA_00909 0.25 -0.0
43,455 + BACOVA_00909 0.27 -0.8
43,468 + BACOVA_00909 0.28 -0.2
43,521 + BACOVA_00909 0.34 +0.8
43,530 - BACOVA_00909 0.35 -0.3
43,540 + BACOVA_00909 0.36 +0.0
43,541 - BACOVA_00909 0.36 -1.6
43,541 - BACOVA_00909 0.36 +1.5
43,541 - BACOVA_00909 0.36 +0.7
43,555 - BACOVA_00909 0.37 -0.5
43,556 + BACOVA_00909 0.38 +0.8
43,556 + BACOVA_00909 0.38 +0.8
43,557 - BACOVA_00909 0.38 +0.0
43,557 - BACOVA_00909 0.38 -0.5
43,560 + BACOVA_00909 0.38 -0.8
43,560 + BACOVA_00909 0.38 +0.0
43,560 + BACOVA_00909 0.38 -0.3
43,561 - BACOVA_00909 0.38 +0.3
43,561 - BACOVA_00909 0.38 +1.8
43,561 - BACOVA_00909 0.38 +0.8
43,562 + BACOVA_00909 0.38 +1.2
43,562 + BACOVA_00909 0.38 +0.2
43,562 + BACOVA_00909 0.38 -0.3
43,679 + BACOVA_00909 0.51 -1.5
43,680 - BACOVA_00909 0.51 -0.6
43,680 - BACOVA_00909 0.51 +0.5
43,680 - BACOVA_00909 0.51 -1.0
43,711 + BACOVA_00909 0.54 -1.2
43,712 - BACOVA_00909 0.55 -0.5
43,757 + BACOVA_00909 0.59 -0.7
43,758 - BACOVA_00909 0.60 +0.2
43,758 - BACOVA_00909 0.60 -0.6
43,836 - BACOVA_00909 0.68 -1.5
43,844 + BACOVA_00909 0.69 -0.3
43,883 - BACOVA_00909 0.73 -0.6
43,907 - BACOVA_00909 0.76 -0.1
43,912 + BACOVA_00909 0.76 +0.6
43,912 + BACOVA_00909 0.76 -0.4
43,912 + BACOVA_00909 0.76 +0.6
43,913 - BACOVA_00909 0.76 +1.4
43,929 + BACOVA_00909 0.78 +0.8
43,960 - BACOVA_00909 0.81 -1.2
44,006 - BACOVA_00909 0.86 +0.8
44,032 - BACOVA_00909 0.89 +0.4
44,041 + -0.3

Or see this region's nucleotide sequence