Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00907

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00906 and BACOVA_00907 are separated by 35 nucleotidesBACOVA_00907 and BACOVA_00908 are separated by 214 nucleotides BACOVA_00906: BACOVA_00906 - hypothetical protein, at 38,561 to 40,027 _00906 BACOVA_00907: BACOVA_00907 - glycosyl hydrolase family 76, at 40,063 to 41,226 _00907 BACOVA_00908: BACOVA_00908 - hypothetical protein, at 41,441 to 43,057 _00908 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 39.069 kb on - strand, within BACOVA_00906at 39.088 kb on + strand, within BACOVA_00906at 39.089 kb on - strand, within BACOVA_00906at 39.172 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.234 kb on - strand, within BACOVA_00906at 39.276 kb on - strand, within BACOVA_00906at 39.280 kb on + strand, within BACOVA_00906at 39.323 kb on + strand, within BACOVA_00906at 39.334 kb on + strand, within BACOVA_00906at 39.335 kb on - strand, within BACOVA_00906at 39.335 kb on - strand, within BACOVA_00906at 39.456 kb on - strand, within BACOVA_00906at 39.572 kb on + strand, within BACOVA_00906at 39.631 kb on + strand, within BACOVA_00906at 39.644 kb on + strand, within BACOVA_00906at 39.645 kb on - strand, within BACOVA_00906at 39.648 kb on + strand, within BACOVA_00906at 39.649 kb on - strand, within BACOVA_00906at 39.649 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.706 kb on - strand, within BACOVA_00906at 39.737 kb on - strand, within BACOVA_00906at 39.805 kb on + strand, within BACOVA_00906at 39.806 kb on - strand, within BACOVA_00906at 39.808 kb on + strand, within BACOVA_00906at 39.809 kb on - strand, within BACOVA_00906at 39.809 kb on - strand, within BACOVA_00906at 39.812 kb on + strand, within BACOVA_00906at 39.813 kb on - strand, within BACOVA_00906at 39.892 kb on + strandat 39.893 kb on - strandat 39.893 kb on - strandat 39.893 kb on - strandat 39.894 kb on + strandat 39.981 kb on - strandat 39.984 kb on - strandat 39.984 kb on - strandat 39.984 kb on - strandat 40.005 kb on - strandat 40.027 kb on + strandat 40.027 kb on + strandat 40.043 kb on - strandat 40.054 kb on + strandat 40.094 kb on + strandat 40.205 kb on + strand, within BACOVA_00907at 40.252 kb on + strand, within BACOVA_00907at 40.253 kb on - strand, within BACOVA_00907at 40.260 kb on - strand, within BACOVA_00907at 40.279 kb on - strand, within BACOVA_00907at 40.279 kb on - strand, within BACOVA_00907at 40.318 kb on + strand, within BACOVA_00907at 40.386 kb on + strand, within BACOVA_00907at 40.387 kb on - strand, within BACOVA_00907at 40.406 kb on + strand, within BACOVA_00907at 40.435 kb on + strand, within BACOVA_00907at 40.467 kb on + strand, within BACOVA_00907at 40.469 kb on + strand, within BACOVA_00907at 40.522 kb on + strand, within BACOVA_00907at 40.565 kb on + strand, within BACOVA_00907at 40.568 kb on - strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.615 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.656 kb on + strand, within BACOVA_00907at 40.722 kb on + strand, within BACOVA_00907at 40.723 kb on - strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.795 kb on - strand, within BACOVA_00907at 40.804 kb on + strand, within BACOVA_00907at 40.807 kb on + strand, within BACOVA_00907at 40.819 kb on - strand, within BACOVA_00907at 40.860 kb on - strand, within BACOVA_00907at 40.918 kb on + strand, within BACOVA_00907at 40.942 kb on - strand, within BACOVA_00907at 40.987 kb on + strand, within BACOVA_00907at 41.013 kb on - strand, within BACOVA_00907at 41.019 kb on - strand, within BACOVA_00907at 41.020 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.053 kb on + strand, within BACOVA_00907at 41.057 kb on + strand, within BACOVA_00907at 41.067 kb on + strand, within BACOVA_00907at 41.101 kb on + strand, within BACOVA_00907at 41.123 kb on + strandat 41.124 kb on - strandat 41.170 kb on - strandat 41.209 kb on - strandat 41.212 kb on + strandat 41.213 kb on - strandat 41.249 kb on + strandat 41.257 kb on + strandat 41.260 kb on + strandat 41.284 kb on + strandat 41.308 kb on + strandat 41.309 kb on - strandat 41.347 kb on - strandat 41.431 kb on + strandat 41.442 kb on + strandat 41.533 kb on + strandat 41.533 kb on + strandat 41.535 kb on + strandat 41.536 kb on - strandat 41.553 kb on + strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.554 kb on - strandat 41.559 kb on - strandat 41.618 kb on + strand, within BACOVA_00908at 41.630 kb on + strand, within BACOVA_00908at 41.734 kb on - strand, within BACOVA_00908at 41.802 kb on - strand, within BACOVA_00908at 41.840 kb on - strand, within BACOVA_00908at 41.861 kb on - strand, within BACOVA_00908at 41.862 kb on + strand, within BACOVA_00908at 41.862 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.871 kb on + strand, within BACOVA_00908at 41.872 kb on - strand, within BACOVA_00908at 41.872 kb on - strand, within BACOVA_00908at 41.882 kb on - strand, within BACOVA_00908at 41.884 kb on - strand, within BACOVA_00908at 41.896 kb on - strand, within BACOVA_00908at 41.911 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.917 kb on + strand, within BACOVA_00908at 41.977 kb on + strand, within BACOVA_00908at 42.029 kb on + strand, within BACOVA_00908at 42.050 kb on + strand, within BACOVA_00908at 42.113 kb on - strand, within BACOVA_00908at 42.116 kb on + strand, within BACOVA_00908at 42.117 kb on - strand, within BACOVA_00908at 42.126 kb on + strand, within BACOVA_00908at 42.127 kb on - strand, within BACOVA_00908at 42.127 kb on - strand, within BACOVA_00908at 42.130 kb on + strand, within BACOVA_00908at 42.130 kb on + strand, within BACOVA_00908at 42.131 kb on - strand, within BACOVA_00908at 42.164 kb on - strand, within BACOVA_00908at 42.167 kb on + strand, within BACOVA_00908at 42.167 kb on + strand, within BACOVA_00908at 42.168 kb on - strand, within BACOVA_00908at 42.199 kb on - strand, within BACOVA_00908at 42.202 kb on + strand, within BACOVA_00908at 42.203 kb on - strand, within BACOVA_00908

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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39,069 - BACOVA_00906 0.35 -0.1
39,088 + BACOVA_00906 0.36 +0.1
39,089 - BACOVA_00906 0.36 +1.1
39,172 + BACOVA_00906 0.42 -1.6
39,199 + BACOVA_00906 0.43 -1.8
39,199 + BACOVA_00906 0.43 -0.2
39,234 - BACOVA_00906 0.46 -0.0
39,276 - BACOVA_00906 0.49 -2.7
39,280 + BACOVA_00906 0.49 -0.7
39,323 + BACOVA_00906 0.52 -1.1
39,334 + BACOVA_00906 0.53 -2.0
39,335 - BACOVA_00906 0.53 +0.3
39,335 - BACOVA_00906 0.53 -0.8
39,456 - BACOVA_00906 0.61 -0.6
39,572 + BACOVA_00906 0.69 -0.0
39,631 + BACOVA_00906 0.73 -1.0
39,644 + BACOVA_00906 0.74 +0.1
39,645 - BACOVA_00906 0.74 +0.6
39,648 + BACOVA_00906 0.74 +0.1
39,649 - BACOVA_00906 0.74 +0.4
39,649 - BACOVA_00906 0.74 -0.3
39,678 - BACOVA_00906 0.76 +1.2
39,678 - BACOVA_00906 0.76 -0.2
39,678 - BACOVA_00906 0.76 +0.4
39,706 - BACOVA_00906 0.78 -0.5
39,737 - BACOVA_00906 0.80 -2.2
39,805 + BACOVA_00906 0.85 -0.5
39,806 - BACOVA_00906 0.85 -0.9
39,808 + BACOVA_00906 0.85 +0.9
39,809 - BACOVA_00906 0.85 +0.1
39,809 - BACOVA_00906 0.85 +0.4
39,812 + BACOVA_00906 0.85 +0.5
39,813 - BACOVA_00906 0.85 -0.3
39,892 + -1.2
39,893 - +0.3
39,893 - -0.1
39,893 - +1.0
39,894 + +0.5
39,981 - +0.5
39,984 - +1.0
39,984 - -2.3
39,984 - +0.4
40,005 - -0.4
40,027 + +0.8
40,027 + -0.7
40,043 - -0.7
40,054 + +0.0
40,094 + -0.0
40,205 + BACOVA_00907 0.12 +1.1
40,252 + BACOVA_00907 0.16 -0.5
40,253 - BACOVA_00907 0.16 +0.2
40,260 - BACOVA_00907 0.17 -0.5
40,279 - BACOVA_00907 0.19 -1.4
40,279 - BACOVA_00907 0.19 +0.1
40,318 + BACOVA_00907 0.22 -0.3
40,386 + BACOVA_00907 0.28 +0.6
40,387 - BACOVA_00907 0.28 -0.6
40,406 + BACOVA_00907 0.29 -0.4
40,435 + BACOVA_00907 0.32 +0.2
40,467 + BACOVA_00907 0.35 +0.1
40,469 + BACOVA_00907 0.35 -1.0
40,522 + BACOVA_00907 0.39 +0.0
40,565 + BACOVA_00907 0.43 -0.6
40,568 - BACOVA_00907 0.43 +0.4
40,585 + BACOVA_00907 0.45 -0.7
40,585 + BACOVA_00907 0.45 -1.6
40,615 + BACOVA_00907 0.47 -1.1
40,647 + BACOVA_00907 0.50 +0.8
40,647 + BACOVA_00907 0.50 -1.7
40,656 + BACOVA_00907 0.51 -0.7
40,722 + BACOVA_00907 0.57 +1.6
40,723 - BACOVA_00907 0.57 +0.3
40,760 + BACOVA_00907 0.60 +0.8
40,760 + BACOVA_00907 0.60 +0.5
40,795 - BACOVA_00907 0.63 +0.7
40,804 + BACOVA_00907 0.64 +0.7
40,807 + BACOVA_00907 0.64 -0.1
40,819 - BACOVA_00907 0.65 -0.8
40,860 - BACOVA_00907 0.68 +0.6
40,918 + BACOVA_00907 0.73 +0.2
40,942 - BACOVA_00907 0.76 -1.2
40,987 + BACOVA_00907 0.79 -0.9
41,013 - BACOVA_00907 0.82 +0.2
41,019 - BACOVA_00907 0.82 -0.5
41,020 + BACOVA_00907 0.82 -0.5
41,053 + BACOVA_00907 0.85 +0.1
41,053 + BACOVA_00907 0.85 +0.3
41,053 + BACOVA_00907 0.85 +0.8
41,057 + BACOVA_00907 0.85 -1.5
41,067 + BACOVA_00907 0.86 +1.5
41,101 + BACOVA_00907 0.89 -0.7
41,123 + +0.3
41,124 - +0.6
41,170 - +1.3
41,209 - +0.5
41,212 + +0.6
41,213 - -1.0
41,249 + +1.0
41,257 + -0.1
41,260 + +0.5
41,284 + +0.7
41,308 + -1.2
41,309 - -0.6
41,347 - -0.7
41,431 + +0.3
41,442 + -1.6
41,533 + -0.7
41,533 + +1.0
41,535 + -4.1
41,536 - +0.6
41,553 + -1.1
41,554 - -1.4
41,554 - +0.8
41,554 - +0.1
41,554 - -0.2
41,554 - -1.0
41,559 - -0.3
41,618 + BACOVA_00908 0.11 +0.2
41,630 + BACOVA_00908 0.12 -1.2
41,734 - BACOVA_00908 0.18 +0.3
41,802 - BACOVA_00908 0.22 +1.1
41,840 - BACOVA_00908 0.25 -0.6
41,861 - BACOVA_00908 0.26 +0.9
41,862 + BACOVA_00908 0.26 -1.0
41,862 + BACOVA_00908 0.26 -0.1
41,871 + BACOVA_00908 0.27 +0.9
41,871 + BACOVA_00908 0.27 +0.7
41,871 + BACOVA_00908 0.27 +0.2
41,872 - BACOVA_00908 0.27 +0.2
41,872 - BACOVA_00908 0.27 +0.3
41,882 - BACOVA_00908 0.27 +0.3
41,884 - BACOVA_00908 0.27 -0.9
41,896 - BACOVA_00908 0.28 +0.0
41,911 + BACOVA_00908 0.29 +1.1
41,917 + BACOVA_00908 0.29 -1.0
41,917 + BACOVA_00908 0.29 -1.5
41,917 + BACOVA_00908 0.29 +0.1
41,977 + BACOVA_00908 0.33 +0.3
42,029 + BACOVA_00908 0.36 +0.8
42,050 + BACOVA_00908 0.38 -0.1
42,113 - BACOVA_00908 0.42 -1.2
42,116 + BACOVA_00908 0.42 +0.2
42,117 - BACOVA_00908 0.42 +0.7
42,126 + BACOVA_00908 0.42 -0.7
42,127 - BACOVA_00908 0.42 -0.5
42,127 - BACOVA_00908 0.42 -0.5
42,130 + BACOVA_00908 0.43 -2.8
42,130 + BACOVA_00908 0.43 +1.1
42,131 - BACOVA_00908 0.43 -0.0
42,164 - BACOVA_00908 0.45 +0.0
42,167 + BACOVA_00908 0.45 +0.5
42,167 + BACOVA_00908 0.45 -0.2
42,168 - BACOVA_00908 0.45 -0.0
42,199 - BACOVA_00908 0.47 +0.4
42,202 + BACOVA_00908 0.47 -0.4
42,203 - BACOVA_00908 0.47 -1.2

Or see this region's nucleotide sequence