Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00906

Experiment: GAM 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00905 and BACOVA_00906 are separated by 243 nucleotidesBACOVA_00906 and BACOVA_00907 are separated by 35 nucleotides BACOVA_00905: BACOVA_00905 - tyrosine phosphatase family, at 37,328 to 38,317 _00905 BACOVA_00906: BACOVA_00906 - hypothetical protein, at 38,561 to 40,027 _00906 BACOVA_00907: BACOVA_00907 - glycosyl hydrolase family 76, at 40,063 to 41,226 _00907 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 37.566 kb on + strand, within BACOVA_00905at 37.576 kb on + strand, within BACOVA_00905at 37.614 kb on - strand, within BACOVA_00905at 37.651 kb on + strand, within BACOVA_00905at 37.651 kb on + strand, within BACOVA_00905at 37.652 kb on - strand, within BACOVA_00905at 37.722 kb on + strand, within BACOVA_00905at 37.723 kb on - strand, within BACOVA_00905at 37.728 kb on - strand, within BACOVA_00905at 37.734 kb on - strand, within BACOVA_00905at 37.754 kb on + strand, within BACOVA_00905at 37.754 kb on + strand, within BACOVA_00905at 37.764 kb on + strand, within BACOVA_00905at 37.769 kb on - strand, within BACOVA_00905at 37.781 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.840 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.844 kb on + strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.845 kb on - strand, within BACOVA_00905at 37.878 kb on + strand, within BACOVA_00905at 37.904 kb on + strand, within BACOVA_00905at 37.904 kb on + strand, within BACOVA_00905at 37.905 kb on - strand, within BACOVA_00905at 37.905 kb on - strand, within BACOVA_00905at 37.910 kb on + strand, within BACOVA_00905at 37.910 kb on + strand, within BACOVA_00905at 37.911 kb on - strand, within BACOVA_00905at 37.936 kb on + strand, within BACOVA_00905at 37.937 kb on - strand, within BACOVA_00905at 37.986 kb on + strand, within BACOVA_00905at 37.986 kb on + strand, within BACOVA_00905at 37.989 kb on - strand, within BACOVA_00905at 38.032 kb on - strand, within BACOVA_00905at 38.071 kb on + strand, within BACOVA_00905at 38.072 kb on - strand, within BACOVA_00905at 38.072 kb on - strand, within BACOVA_00905at 38.108 kb on - strand, within BACOVA_00905at 38.110 kb on + strand, within BACOVA_00905at 38.114 kb on + strand, within BACOVA_00905at 38.124 kb on + strand, within BACOVA_00905at 38.124 kb on + strand, within BACOVA_00905at 38.125 kb on - strand, within BACOVA_00905at 38.128 kb on - strand, within BACOVA_00905at 38.131 kb on - strand, within BACOVA_00905at 38.154 kb on - strand, within BACOVA_00905at 38.167 kb on + strand, within BACOVA_00905at 38.168 kb on - strand, within BACOVA_00905at 38.212 kb on + strand, within BACOVA_00905at 38.235 kb on + strandat 38.256 kb on - strandat 38.281 kb on + strandat 38.285 kb on - strandat 38.294 kb on + strandat 38.295 kb on - strandat 38.321 kb on + strandat 38.322 kb on - strandat 38.323 kb on + strandat 38.323 kb on + strandat 38.324 kb on - strandat 38.324 kb on - strandat 38.324 kb on - strandat 38.357 kb on + strandat 38.378 kb on + strandat 38.390 kb on - strandat 38.391 kb on + strandat 38.395 kb on + strandat 38.451 kb on + strandat 38.466 kb on - strandat 38.466 kb on - strandat 38.486 kb on - strandat 38.547 kb on - strandat 38.560 kb on - strandat 38.562 kb on + strandat 38.563 kb on - strandat 38.630 kb on - strandat 38.630 kb on - strandat 38.696 kb on - strandat 38.724 kb on - strand, within BACOVA_00906at 38.733 kb on - strand, within BACOVA_00906at 38.767 kb on + strand, within BACOVA_00906at 38.767 kb on + strand, within BACOVA_00906at 38.785 kb on + strand, within BACOVA_00906at 38.785 kb on + strand, within BACOVA_00906at 38.799 kb on - strand, within BACOVA_00906at 38.859 kb on + strand, within BACOVA_00906at 38.905 kb on + strand, within BACOVA_00906at 38.917 kb on + strand, within BACOVA_00906at 38.918 kb on - strand, within BACOVA_00906at 38.918 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.922 kb on - strand, within BACOVA_00906at 38.935 kb on - strand, within BACOVA_00906at 38.957 kb on + strand, within BACOVA_00906at 39.010 kb on + strand, within BACOVA_00906at 39.025 kb on - strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.028 kb on + strand, within BACOVA_00906at 39.029 kb on - strand, within BACOVA_00906at 39.029 kb on - strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.039 kb on + strand, within BACOVA_00906at 39.069 kb on - strand, within BACOVA_00906at 39.088 kb on + strand, within BACOVA_00906at 39.089 kb on - strand, within BACOVA_00906at 39.172 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.199 kb on + strand, within BACOVA_00906at 39.234 kb on - strand, within BACOVA_00906at 39.276 kb on - strand, within BACOVA_00906at 39.280 kb on + strand, within BACOVA_00906at 39.323 kb on + strand, within BACOVA_00906at 39.334 kb on + strand, within BACOVA_00906at 39.335 kb on - strand, within BACOVA_00906at 39.335 kb on - strand, within BACOVA_00906at 39.456 kb on - strand, within BACOVA_00906at 39.572 kb on + strand, within BACOVA_00906at 39.631 kb on + strand, within BACOVA_00906at 39.644 kb on + strand, within BACOVA_00906at 39.645 kb on - strand, within BACOVA_00906at 39.648 kb on + strand, within BACOVA_00906at 39.649 kb on - strand, within BACOVA_00906at 39.649 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.678 kb on - strand, within BACOVA_00906at 39.706 kb on - strand, within BACOVA_00906at 39.737 kb on - strand, within BACOVA_00906at 39.805 kb on + strand, within BACOVA_00906at 39.806 kb on - strand, within BACOVA_00906at 39.808 kb on + strand, within BACOVA_00906at 39.809 kb on - strand, within BACOVA_00906at 39.809 kb on - strand, within BACOVA_00906at 39.812 kb on + strand, within BACOVA_00906at 39.813 kb on - strand, within BACOVA_00906at 39.892 kb on + strandat 39.893 kb on - strandat 39.893 kb on - strandat 39.893 kb on - strandat 39.894 kb on + strandat 39.981 kb on - strandat 39.984 kb on - strandat 39.984 kb on - strandat 39.984 kb on - strandat 40.005 kb on - strandat 40.027 kb on + strandat 40.027 kb on + strandat 40.043 kb on - strandat 40.054 kb on + strandat 40.094 kb on + strandat 40.205 kb on + strand, within BACOVA_00907at 40.252 kb on + strand, within BACOVA_00907at 40.253 kb on - strand, within BACOVA_00907at 40.260 kb on - strand, within BACOVA_00907at 40.279 kb on - strand, within BACOVA_00907at 40.279 kb on - strand, within BACOVA_00907at 40.318 kb on + strand, within BACOVA_00907at 40.386 kb on + strand, within BACOVA_00907at 40.387 kb on - strand, within BACOVA_00907at 40.406 kb on + strand, within BACOVA_00907at 40.435 kb on + strand, within BACOVA_00907at 40.467 kb on + strand, within BACOVA_00907at 40.469 kb on + strand, within BACOVA_00907at 40.522 kb on + strand, within BACOVA_00907at 40.565 kb on + strand, within BACOVA_00907at 40.568 kb on - strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.585 kb on + strand, within BACOVA_00907at 40.615 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.647 kb on + strand, within BACOVA_00907at 40.656 kb on + strand, within BACOVA_00907at 40.722 kb on + strand, within BACOVA_00907at 40.723 kb on - strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.760 kb on + strand, within BACOVA_00907at 40.795 kb on - strand, within BACOVA_00907at 40.804 kb on + strand, within BACOVA_00907at 40.807 kb on + strand, within BACOVA_00907at 40.819 kb on - strand, within BACOVA_00907at 40.860 kb on - strand, within BACOVA_00907at 40.918 kb on + strand, within BACOVA_00907at 40.942 kb on - strand, within BACOVA_00907at 40.987 kb on + strand, within BACOVA_00907at 41.013 kb on - strand, within BACOVA_00907at 41.019 kb on - strand, within BACOVA_00907at 41.020 kb on + strand, within BACOVA_00907

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
remove
37,566 + BACOVA_00905 0.24 +0.3
37,576 + BACOVA_00905 0.25 +2.1
37,614 - BACOVA_00905 0.29 +0.2
37,651 + BACOVA_00905 0.33 +0.2
37,651 + BACOVA_00905 0.33 +0.5
37,652 - BACOVA_00905 0.33 -0.9
37,722 + BACOVA_00905 0.40 -1.2
37,723 - BACOVA_00905 0.40 -2.0
37,728 - BACOVA_00905 0.40 +0.4
37,734 - BACOVA_00905 0.41 +0.2
37,754 + BACOVA_00905 0.43 +0.2
37,754 + BACOVA_00905 0.43 -0.8
37,764 + BACOVA_00905 0.44 -0.5
37,769 - BACOVA_00905 0.45 -0.6
37,781 + BACOVA_00905 0.46 -0.7
37,840 + BACOVA_00905 0.52 +0.5
37,840 + BACOVA_00905 0.52 -1.7
37,840 + BACOVA_00905 0.52 -1.7
37,844 + BACOVA_00905 0.52 -1.6
37,844 + BACOVA_00905 0.52 +1.4
37,844 + BACOVA_00905 0.52 -2.4
37,844 + BACOVA_00905 0.52 -0.7
37,844 + BACOVA_00905 0.52 -2.5
37,845 - BACOVA_00905 0.52 -0.9
37,845 - BACOVA_00905 0.52 -2.6
37,845 - BACOVA_00905 0.52 -0.7
37,845 - BACOVA_00905 0.52 +1.5
37,878 + BACOVA_00905 0.56 -0.0
37,904 + BACOVA_00905 0.58 -1.8
37,904 + BACOVA_00905 0.58 -1.3
37,905 - BACOVA_00905 0.58 -0.3
37,905 - BACOVA_00905 0.58 -0.1
37,910 + BACOVA_00905 0.59 +0.8
37,910 + BACOVA_00905 0.59 +0.6
37,911 - BACOVA_00905 0.59 +0.0
37,936 + BACOVA_00905 0.61 -0.5
37,937 - BACOVA_00905 0.62 -2.1
37,986 + BACOVA_00905 0.66 +0.6
37,986 + BACOVA_00905 0.66 -0.1
37,989 - BACOVA_00905 0.67 -0.9
38,032 - BACOVA_00905 0.71 +0.6
38,071 + BACOVA_00905 0.75 -1.1
38,072 - BACOVA_00905 0.75 -1.3
38,072 - BACOVA_00905 0.75 +0.3
38,108 - BACOVA_00905 0.79 -1.5
38,110 + BACOVA_00905 0.79 -0.9
38,114 + BACOVA_00905 0.79 -0.7
38,124 + BACOVA_00905 0.80 -0.0
38,124 + BACOVA_00905 0.80 +0.4
38,125 - BACOVA_00905 0.81 +0.2
38,128 - BACOVA_00905 0.81 +0.1
38,131 - BACOVA_00905 0.81 -1.4
38,154 - BACOVA_00905 0.83 +0.4
38,167 + BACOVA_00905 0.85 -1.6
38,168 - BACOVA_00905 0.85 -0.2
38,212 + BACOVA_00905 0.89 +0.8
38,235 + -2.0
38,256 - +0.5
38,281 + +1.0
38,285 - +0.5
38,294 + -0.5
38,295 - +0.0
38,321 + -0.7
38,322 - -0.1
38,323 + +0.6
38,323 + -0.9
38,324 - -1.7
38,324 - +0.6
38,324 - +0.1
38,357 + +0.4
38,378 + +0.0
38,390 - +0.3
38,391 + +0.1
38,395 + -0.4
38,451 + -0.2
38,466 - +1.1
38,466 - -0.2
38,486 - -0.7
38,547 - +0.2
38,560 - +0.8
38,562 + -0.8
38,563 - -0.9
38,630 - -1.6
38,630 - -1.3
38,696 - -0.6
38,724 - BACOVA_00906 0.11 -0.9
38,733 - BACOVA_00906 0.12 -1.2
38,767 + BACOVA_00906 0.14 +0.2
38,767 + BACOVA_00906 0.14 -0.9
38,785 + BACOVA_00906 0.15 +2.0
38,785 + BACOVA_00906 0.15 +0.8
38,799 - BACOVA_00906 0.16 +0.3
38,859 + BACOVA_00906 0.20 +0.8
38,905 + BACOVA_00906 0.23 -0.1
38,917 + BACOVA_00906 0.24 -0.7
38,918 - BACOVA_00906 0.24 +0.9
38,918 - BACOVA_00906 0.24 +0.6
38,922 - BACOVA_00906 0.25 +0.1
38,922 - BACOVA_00906 0.25 -1.6
38,922 - BACOVA_00906 0.25 +0.9
38,935 - BACOVA_00906 0.25 -0.0
38,957 + BACOVA_00906 0.27 +0.4
39,010 + BACOVA_00906 0.31 +0.7
39,025 - BACOVA_00906 0.32 -1.4
39,028 + BACOVA_00906 0.32 +1.0
39,028 + BACOVA_00906 0.32 -0.6
39,028 + BACOVA_00906 0.32 +1.2
39,029 - BACOVA_00906 0.32 -0.3
39,029 - BACOVA_00906 0.32 +1.6
39,039 + BACOVA_00906 0.33 -0.6
39,039 + BACOVA_00906 0.33 +0.4
39,039 + BACOVA_00906 0.33 +0.4
39,069 - BACOVA_00906 0.35 -0.1
39,088 + BACOVA_00906 0.36 +0.1
39,089 - BACOVA_00906 0.36 +1.1
39,172 + BACOVA_00906 0.42 -1.6
39,199 + BACOVA_00906 0.43 -1.8
39,199 + BACOVA_00906 0.43 -0.2
39,234 - BACOVA_00906 0.46 -0.0
39,276 - BACOVA_00906 0.49 -2.7
39,280 + BACOVA_00906 0.49 -0.7
39,323 + BACOVA_00906 0.52 -1.1
39,334 + BACOVA_00906 0.53 -2.0
39,335 - BACOVA_00906 0.53 +0.3
39,335 - BACOVA_00906 0.53 -0.8
39,456 - BACOVA_00906 0.61 -0.6
39,572 + BACOVA_00906 0.69 -0.0
39,631 + BACOVA_00906 0.73 -1.0
39,644 + BACOVA_00906 0.74 +0.1
39,645 - BACOVA_00906 0.74 +0.6
39,648 + BACOVA_00906 0.74 +0.1
39,649 - BACOVA_00906 0.74 +0.4
39,649 - BACOVA_00906 0.74 -0.3
39,678 - BACOVA_00906 0.76 +1.2
39,678 - BACOVA_00906 0.76 -0.2
39,678 - BACOVA_00906 0.76 +0.4
39,706 - BACOVA_00906 0.78 -0.5
39,737 - BACOVA_00906 0.80 -2.2
39,805 + BACOVA_00906 0.85 -0.5
39,806 - BACOVA_00906 0.85 -0.9
39,808 + BACOVA_00906 0.85 +0.9
39,809 - BACOVA_00906 0.85 +0.1
39,809 - BACOVA_00906 0.85 +0.4
39,812 + BACOVA_00906 0.85 +0.5
39,813 - BACOVA_00906 0.85 -0.3
39,892 + -1.2
39,893 - +0.3
39,893 - -0.1
39,893 - +1.0
39,894 + +0.5
39,981 - +0.5
39,984 - +1.0
39,984 - -2.3
39,984 - +0.4
40,005 - -0.4
40,027 + +0.8
40,027 + -0.7
40,043 - -0.7
40,054 + +0.0
40,094 + -0.0
40,205 + BACOVA_00907 0.12 +1.1
40,252 + BACOVA_00907 0.16 -0.5
40,253 - BACOVA_00907 0.16 +0.2
40,260 - BACOVA_00907 0.17 -0.5
40,279 - BACOVA_00907 0.19 -1.4
40,279 - BACOVA_00907 0.19 +0.1
40,318 + BACOVA_00907 0.22 -0.3
40,386 + BACOVA_00907 0.28 +0.6
40,387 - BACOVA_00907 0.28 -0.6
40,406 + BACOVA_00907 0.29 -0.4
40,435 + BACOVA_00907 0.32 +0.2
40,467 + BACOVA_00907 0.35 +0.1
40,469 + BACOVA_00907 0.35 -1.0
40,522 + BACOVA_00907 0.39 +0.0
40,565 + BACOVA_00907 0.43 -0.6
40,568 - BACOVA_00907 0.43 +0.4
40,585 + BACOVA_00907 0.45 -0.7
40,585 + BACOVA_00907 0.45 -1.6
40,615 + BACOVA_00907 0.47 -1.1
40,647 + BACOVA_00907 0.50 +0.8
40,647 + BACOVA_00907 0.50 -1.7
40,656 + BACOVA_00907 0.51 -0.7
40,722 + BACOVA_00907 0.57 +1.6
40,723 - BACOVA_00907 0.57 +0.3
40,760 + BACOVA_00907 0.60 +0.8
40,760 + BACOVA_00907 0.60 +0.5
40,795 - BACOVA_00907 0.63 +0.7
40,804 + BACOVA_00907 0.64 +0.7
40,807 + BACOVA_00907 0.64 -0.1
40,819 - BACOVA_00907 0.65 -0.8
40,860 - BACOVA_00907 0.68 +0.6
40,918 + BACOVA_00907 0.73 +0.2
40,942 - BACOVA_00907 0.76 -1.2
40,987 + BACOVA_00907 0.79 -0.9
41,013 - BACOVA_00907 0.82 +0.2
41,019 - BACOVA_00907 0.82 -0.5
41,020 + BACOVA_00907 0.82 -0.5

Or see this region's nucleotide sequence