Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00783 and BACOVA_00784 are separated by 97 nucleotides BACOVA_00784 and BACOVA_00785 are separated by 176 nucleotides BACOVA_00785 and BACOVA_00786 are separated by 30 nucleotides
BACOVA_00783: BACOVA_00783 - hypothetical protein, at 467,450 to 467,686
_00783
BACOVA_00784: BACOVA_00784 - Sigma-70 region 2, at 467,784 to 468,335
_00784
BACOVA_00785: BACOVA_00785 - hypothetical protein, at 468,512 to 471,631
_00785
BACOVA_00786: BACOVA_00786 - hypothetical protein, at 471,662 to 473,344
_00786
Position (kb) 468
469
470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 467.516 kb on + strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.563 kb on + strand, within BACOVA_00783 at 467.640 kb on - strand, within BACOVA_00783 at 467.652 kb on + strand, within BACOVA_00783 at 467.652 kb on + strand, within BACOVA_00783 at 467.701 kb on + strand at 467.701 kb on + strand at 467.702 kb on - strand at 467.702 kb on - strand at 467.723 kb on + strand at 467.727 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.752 kb on - strand at 467.752 kb on - strand at 467.752 kb on - strand at 467.755 kb on + strand at 467.846 kb on - strand, within BACOVA_00784 at 467.846 kb on - strand, within BACOVA_00784 at 467.852 kb on + strand, within BACOVA_00784 at 467.853 kb on - strand, within BACOVA_00784 at 467.859 kb on - strand, within BACOVA_00784 at 467.870 kb on + strand, within BACOVA_00784 at 467.892 kb on + strand, within BACOVA_00784 at 467.893 kb on - strand, within BACOVA_00784 at 467.895 kb on - strand, within BACOVA_00784 at 467.900 kb on - strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.907 kb on - strand, within BACOVA_00784 at 467.932 kb on - strand, within BACOVA_00784 at 467.992 kb on + strand, within BACOVA_00784 at 467.993 kb on - strand, within BACOVA_00784 at 468.003 kb on + strand, within BACOVA_00784 at 468.004 kb on - strand, within BACOVA_00784 at 468.011 kb on + strand, within BACOVA_00784 at 468.021 kb on + strand, within BACOVA_00784 at 468.027 kb on - strand, within BACOVA_00784 at 468.053 kb on + strand, within BACOVA_00784 at 468.055 kb on + strand, within BACOVA_00784 at 468.055 kb on + strand, within BACOVA_00784 at 468.056 kb on - strand, within BACOVA_00784 at 468.059 kb on + strand, within BACOVA_00784 at 468.059 kb on + strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.109 kb on + strand, within BACOVA_00784 at 468.135 kb on + strand, within BACOVA_00784 at 468.200 kb on + strand, within BACOVA_00784 at 468.251 kb on + strand, within BACOVA_00784 at 468.254 kb on - strand, within BACOVA_00784 at 468.320 kb on + strand at 468.335 kb on + strand at 468.335 kb on + strand at 468.335 kb on + strand at 468.336 kb on - strand at 468.436 kb on + strand at 468.488 kb on + strand at 468.514 kb on - strand at 468.515 kb on + strand at 468.521 kb on - strand at 468.535 kb on + strand at 468.635 kb on + strand at 468.636 kb on - strand at 468.638 kb on + strand at 468.740 kb on - strand at 468.787 kb on + strand at 468.788 kb on - strand at 468.916 kb on + strand, within BACOVA_00785 at 468.916 kb on + strand, within BACOVA_00785 at 468.917 kb on - strand, within BACOVA_00785 at 468.917 kb on - strand, within BACOVA_00785 at 468.918 kb on + strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.979 kb on + strand, within BACOVA_00785 at 469.019 kb on - strand, within BACOVA_00785 at 469.021 kb on - strand, within BACOVA_00785 at 469.030 kb on - strand, within BACOVA_00785 at 469.043 kb on - strand, within BACOVA_00785 at 469.046 kb on - strand, within BACOVA_00785 at 469.046 kb on - strand, within BACOVA_00785 at 469.109 kb on + strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.116 kb on - strand, within BACOVA_00785 at 469.176 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.297 kb on + strand, within BACOVA_00785 at 469.298 kb on - strand, within BACOVA_00785 at 469.305 kb on + strand, within BACOVA_00785 at 469.306 kb on - strand, within BACOVA_00785 at 469.381 kb on + strand, within BACOVA_00785 at 469.381 kb on + strand, within BACOVA_00785 at 469.382 kb on - strand, within BACOVA_00785 at 469.431 kb on - strand, within BACOVA_00785 at 469.503 kb on - strand, within BACOVA_00785 at 469.580 kb on - strand, within BACOVA_00785 at 469.599 kb on + strand, within BACOVA_00785 at 469.599 kb on + strand, within BACOVA_00785 at 469.613 kb on + strand, within BACOVA_00785 at 469.843 kb on + strand, within BACOVA_00785 at 469.924 kb on + strand, within BACOVA_00785 at 469.934 kb on - strand, within BACOVA_00785 at 469.972 kb on + strand, within BACOVA_00785 at 469.972 kb on + strand, within BACOVA_00785 at 469.987 kb on - strand, within BACOVA_00785 at 470.013 kb on - strand, within BACOVA_00785 at 470.065 kb on - strand, within BACOVA_00785 at 470.265 kb on + strand, within BACOVA_00785 at 470.265 kb on + strand, within BACOVA_00785 at 470.411 kb on - strand, within BACOVA_00785 at 470.415 kb on - strand, within BACOVA_00785 at 470.417 kb on + strand, within BACOVA_00785 at 470.452 kb on + strand, within BACOVA_00785 at 470.479 kb on - strand, within BACOVA_00785 at 470.570 kb on + strand, within BACOVA_00785 at 470.660 kb on - strand, within BACOVA_00785 at 470.688 kb on - strand, within BACOVA_00785 at 470.759 kb on - strand, within BACOVA_00785 at 470.759 kb on - strand, within BACOVA_00785 at 470.821 kb on + strand, within BACOVA_00785 at 470.863 kb on - strand, within BACOVA_00785 at 470.863 kb on - strand, within BACOVA_00785 at 470.886 kb on + strand, within BACOVA_00785 at 471.008 kb on - strand, within BACOVA_00785 at 471.199 kb on - strand, within BACOVA_00785 at 471.237 kb on - strand, within BACOVA_00785 at 471.287 kb on - strand, within BACOVA_00785 at 471.329 kb on + strand at 471.329 kb on + strand at 471.372 kb on - strand at 471.375 kb on + strand at 471.407 kb on - strand at 471.407 kb on - strand at 471.425 kb on + strand at 471.472 kb on + strand at 471.472 kb on + strand at 471.473 kb on - strand at 471.473 kb on - strand at 471.474 kb on + strand at 471.551 kb on + strand at 471.551 kb on + strand at 471.596 kb on + strand at 471.618 kb on - strand at 471.618 kb on - strand at 471.623 kb on + strand at 471.624 kb on - strand at 471.637 kb on + strand at 471.645 kb on - strand at 471.686 kb on - strand at 471.697 kb on - strand at 471.742 kb on + strand at 471.743 kb on - strand at 471.753 kb on + strand at 471.770 kb on - strand at 471.876 kb on - strand, within BACOVA_00786 at 471.889 kb on + strand, within BACOVA_00786 at 471.919 kb on + strand, within BACOVA_00786 at 471.942 kb on + strand, within BACOVA_00786 at 471.942 kb on + strand, within BACOVA_00786 at 471.973 kb on - strand, within BACOVA_00786 at 472.049 kb on + strand, within BACOVA_00786 at 472.072 kb on + strand, within BACOVA_00786 at 472.079 kb on + strand, within BACOVA_00786 at 472.080 kb on - strand, within BACOVA_00786 at 472.085 kb on - strand, within BACOVA_00786 at 472.085 kb on - strand, within BACOVA_00786 at 472.089 kb on - strand, within BACOVA_00786 at 472.099 kb on + strand, within BACOVA_00786 at 472.100 kb on - strand, within BACOVA_00786 at 472.102 kb on - strand, within BACOVA_00786 at 472.164 kb on - strand, within BACOVA_00786 at 472.164 kb on - strand, within BACOVA_00786 at 472.206 kb on - strand, within BACOVA_00786 at 472.222 kb on + strand, within BACOVA_00786 at 472.253 kb on - strand, within BACOVA_00786 at 472.255 kb on + strand, within BACOVA_00786 at 472.350 kb on - strand, within BACOVA_00786 at 472.390 kb on + strand, within BACOVA_00786 at 472.390 kb on + strand, within BACOVA_00786 at 472.391 kb on - strand, within BACOVA_00786 at 472.396 kb on - strand, within BACOVA_00786 at 472.534 kb on + strand, within BACOVA_00786 at 472.541 kb on - strand, within BACOVA_00786 at 472.576 kb on - strand, within BACOVA_00786 at 472.579 kb on + strand, within BACOVA_00786 at 472.615 kb on + strand, within BACOVA_00786 at 472.622 kb on + strand, within BACOVA_00786
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 467,516 + BACOVA_00783 0.28 +0.3 467,556 - BACOVA_00783 0.45 +0.8 467,556 - BACOVA_00783 0.45 +0.6 467,556 - BACOVA_00783 0.45 +0.6 467,563 + BACOVA_00783 0.48 +1.5 467,640 - BACOVA_00783 0.80 +1.8 467,652 + BACOVA_00783 0.85 +0.1 467,652 + BACOVA_00783 0.85 -1.9 467,701 + +0.4 467,701 + -0.8 467,702 - +0.7 467,702 - +0.6 467,723 + +0.9 467,727 + -2.3 467,751 + +0.0 467,751 + +0.8 467,751 + +0.1 467,751 + +1.3 467,752 - -0.1 467,752 - -2.4 467,752 - -2.4 467,755 + -1.0 467,846 - BACOVA_00784 0.11 -0.8 467,846 - BACOVA_00784 0.11 -3.2 467,852 + BACOVA_00784 0.12 +0.3 467,853 - BACOVA_00784 0.12 -0.6 467,859 - BACOVA_00784 0.14 +0.6 467,870 + BACOVA_00784 0.16 -1.0 467,892 + BACOVA_00784 0.20 -0.5 467,893 - BACOVA_00784 0.20 -0.8 467,895 - BACOVA_00784 0.20 +0.1 467,900 - BACOVA_00784 0.21 +0.2 467,901 + BACOVA_00784 0.21 -0.2 467,901 + BACOVA_00784 0.21 -0.9 467,901 + BACOVA_00784 0.21 +1.2 467,907 - BACOVA_00784 0.22 -1.6 467,932 - BACOVA_00784 0.27 -0.9 467,992 + BACOVA_00784 0.38 +0.5 467,993 - BACOVA_00784 0.38 +0.5 468,003 + BACOVA_00784 0.40 -1.0 468,004 - BACOVA_00784 0.40 +0.4 468,011 + BACOVA_00784 0.41 -1.8 468,021 + BACOVA_00784 0.43 +0.0 468,027 - BACOVA_00784 0.44 +0.7 468,053 + BACOVA_00784 0.49 -1.6 468,055 + BACOVA_00784 0.49 -0.1 468,055 + BACOVA_00784 0.49 +0.6 468,056 - BACOVA_00784 0.49 +0.4 468,059 + BACOVA_00784 0.50 +1.0 468,059 + BACOVA_00784 0.50 -1.4 468,060 - BACOVA_00784 0.50 -0.2 468,060 - BACOVA_00784 0.50 -1.0 468,060 - BACOVA_00784 0.50 -1.8 468,109 + BACOVA_00784 0.59 -1.9 468,135 + BACOVA_00784 0.64 +0.2 468,200 + BACOVA_00784 0.75 +0.1 468,251 + BACOVA_00784 0.85 +0.8 468,254 - BACOVA_00784 0.85 -2.0 468,320 + +0.8 468,335 + +0.9 468,335 + +0.5 468,335 + -0.5 468,336 - -1.5 468,436 + -2.3 468,488 + +0.4 468,514 - +0.3 468,515 + +1.2 468,521 - +0.5 468,535 + +0.9 468,635 + +1.0 468,636 - +1.3 468,638 + -1.4 468,740 - -1.4 468,787 + -0.4 468,788 - +0.9 468,916 + BACOVA_00785 0.13 -1.8 468,916 + BACOVA_00785 0.13 -0.5 468,917 - BACOVA_00785 0.13 -0.7 468,917 - BACOVA_00785 0.13 -0.8 468,918 + BACOVA_00785 0.13 -0.1 468,919 - BACOVA_00785 0.13 +1.1 468,919 - BACOVA_00785 0.13 -0.3 468,919 - BACOVA_00785 0.13 -1.0 468,979 + BACOVA_00785 0.15 -0.4 469,019 - BACOVA_00785 0.16 +0.8 469,021 - BACOVA_00785 0.16 +0.6 469,030 - BACOVA_00785 0.17 -1.7 469,043 - BACOVA_00785 0.17 +1.2 469,046 - BACOVA_00785 0.17 -3.0 469,046 - BACOVA_00785 0.17 +0.8 469,109 + BACOVA_00785 0.19 -1.0 469,110 - BACOVA_00785 0.19 -0.9 469,110 - BACOVA_00785 0.19 +0.8 469,110 - BACOVA_00785 0.19 +0.0 469,110 - BACOVA_00785 0.19 -1.5 469,116 - BACOVA_00785 0.19 -0.0 469,176 - BACOVA_00785 0.21 -0.1 469,264 - BACOVA_00785 0.24 +1.6 469,264 - BACOVA_00785 0.24 -0.2 469,264 - BACOVA_00785 0.24 -0.6 469,297 + BACOVA_00785 0.25 -0.8 469,298 - BACOVA_00785 0.25 -0.2 469,305 + BACOVA_00785 0.25 +0.6 469,306 - BACOVA_00785 0.25 +1.2 469,381 + BACOVA_00785 0.28 +3.8 469,381 + BACOVA_00785 0.28 -1.1 469,382 - BACOVA_00785 0.28 +0.7 469,431 - BACOVA_00785 0.29 -0.2 469,503 - BACOVA_00785 0.32 -0.3 469,580 - BACOVA_00785 0.34 -0.0 469,599 + BACOVA_00785 0.35 -0.1 469,599 + BACOVA_00785 0.35 -0.7 469,613 + BACOVA_00785 0.35 -0.5 469,843 + BACOVA_00785 0.43 -0.5 469,924 + BACOVA_00785 0.45 -0.8 469,934 - BACOVA_00785 0.46 -0.5 469,972 + BACOVA_00785 0.47 -0.3 469,972 + BACOVA_00785 0.47 +0.2 469,987 - BACOVA_00785 0.47 -2.6 470,013 - BACOVA_00785 0.48 -1.2 470,065 - BACOVA_00785 0.50 -2.3 470,265 + BACOVA_00785 0.56 +0.1 470,265 + BACOVA_00785 0.56 -1.0 470,411 - BACOVA_00785 0.61 -0.2 470,415 - BACOVA_00785 0.61 +1.1 470,417 + BACOVA_00785 0.61 +1.2 470,452 + BACOVA_00785 0.62 -0.0 470,479 - BACOVA_00785 0.63 +0.6 470,570 + BACOVA_00785 0.66 -0.4 470,660 - BACOVA_00785 0.69 +0.8 470,688 - BACOVA_00785 0.70 -1.4 470,759 - BACOVA_00785 0.72 -0.8 470,759 - BACOVA_00785 0.72 +0.3 470,821 + BACOVA_00785 0.74 -1.4 470,863 - BACOVA_00785 0.75 -0.5 470,863 - BACOVA_00785 0.75 +1.0 470,886 + BACOVA_00785 0.76 +1.1 471,008 - BACOVA_00785 0.80 -0.9 471,199 - BACOVA_00785 0.86 +0.4 471,237 - BACOVA_00785 0.87 +0.7 471,287 - BACOVA_00785 0.89 -1.6 471,329 + +0.4 471,329 + +0.6 471,372 - +1.3 471,375 + -0.8 471,407 - +0.2 471,407 - -0.1 471,425 + -1.9 471,472 + +0.9 471,472 + -0.9 471,473 - -0.8 471,473 - +0.2 471,474 + -0.6 471,551 + -1.4 471,551 + +0.7 471,596 + +0.4 471,618 - +0.9 471,618 - -1.9 471,623 + +0.8 471,624 - +0.2 471,637 + +1.0 471,645 - -1.2 471,686 - +0.4 471,697 - -0.5 471,742 + -1.6 471,743 - +1.1 471,753 + +1.4 471,770 - +0.5 471,876 - BACOVA_00786 0.13 +0.2 471,889 + BACOVA_00786 0.13 +0.8 471,919 + BACOVA_00786 0.15 +1.7 471,942 + BACOVA_00786 0.17 -1.2 471,942 + BACOVA_00786 0.17 -0.1 471,973 - BACOVA_00786 0.18 -2.3 472,049 + BACOVA_00786 0.23 +0.1 472,072 + BACOVA_00786 0.24 +0.4 472,079 + BACOVA_00786 0.25 -1.2 472,080 - BACOVA_00786 0.25 -1.2 472,085 - BACOVA_00786 0.25 -2.0 472,085 - BACOVA_00786 0.25 +0.1 472,089 - BACOVA_00786 0.25 -0.3 472,099 + BACOVA_00786 0.26 -0.8 472,100 - BACOVA_00786 0.26 -1.2 472,102 - BACOVA_00786 0.26 -0.4 472,164 - BACOVA_00786 0.30 +0.8 472,164 - BACOVA_00786 0.30 +0.0 472,206 - BACOVA_00786 0.32 -0.3 472,222 + BACOVA_00786 0.33 -0.2 472,253 - BACOVA_00786 0.35 -0.8 472,255 + BACOVA_00786 0.35 +1.5 472,350 - BACOVA_00786 0.41 +0.8 472,390 + BACOVA_00786 0.43 -1.7 472,390 + BACOVA_00786 0.43 -0.8 472,391 - BACOVA_00786 0.43 +1.6 472,396 - BACOVA_00786 0.44 +1.6 472,534 + BACOVA_00786 0.52 -0.0 472,541 - BACOVA_00786 0.52 -1.6 472,576 - BACOVA_00786 0.54 +1.6 472,579 + BACOVA_00786 0.54 +1.1 472,615 + BACOVA_00786 0.57 +0.4 472,622 + BACOVA_00786 0.57 +0.2
Or see this region's nucleotide sequence