Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00596

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00594 and BACOVA_00595 are separated by 83 nucleotidesBACOVA_00595 and BACOVA_00596 are separated by 137 nucleotidesBACOVA_00596 and BACOVA_00597 are separated by 198 nucleotides BACOVA_00594: BACOVA_00594 - hypothetical protein, at 30,815 to 31,294 _00594 BACOVA_00595: BACOVA_00595 - hypothetical protein, at 31,378 to 31,941 _00595 BACOVA_00596: BACOVA_00596 - redoxin family protein, at 32,079 to 32,579 _00596 BACOVA_00597: BACOVA_00597 - hypothetical protein, at 32,778 to 33,662 _00597 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.362 kb on - strandat 31.362 kb on - strandat 31.461 kb on + strand, within BACOVA_00595at 31.461 kb on + strand, within BACOVA_00595at 31.461 kb on + strand, within BACOVA_00595at 31.463 kb on + strand, within BACOVA_00595at 31.463 kb on + strand, within BACOVA_00595at 31.499 kb on - strand, within BACOVA_00595at 31.502 kb on - strand, within BACOVA_00595at 31.505 kb on - strand, within BACOVA_00595at 31.544 kb on + strand, within BACOVA_00595at 31.544 kb on + strand, within BACOVA_00595at 31.569 kb on - strand, within BACOVA_00595at 31.618 kb on - strand, within BACOVA_00595at 31.631 kb on - strand, within BACOVA_00595at 31.631 kb on - strand, within BACOVA_00595at 31.644 kb on + strand, within BACOVA_00595at 31.712 kb on - strand, within BACOVA_00595at 31.717 kb on - strand, within BACOVA_00595at 31.719 kb on - strand, within BACOVA_00595at 31.719 kb on - strand, within BACOVA_00595at 31.719 kb on - strand, within BACOVA_00595at 31.777 kb on - strand, within BACOVA_00595at 31.784 kb on - strand, within BACOVA_00595at 31.796 kb on - strand, within BACOVA_00595at 31.809 kb on + strand, within BACOVA_00595at 31.810 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.814 kb on - strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.823 kb on + strand, within BACOVA_00595at 31.858 kb on + strand, within BACOVA_00595at 31.866 kb on + strand, within BACOVA_00595at 31.868 kb on + strand, within BACOVA_00595at 31.868 kb on + strand, within BACOVA_00595at 31.967 kb on + strandat 31.967 kb on + strandat 31.967 kb on + strandat 31.968 kb on - strandat 32.002 kb on + strandat 32.024 kb on + strandat 32.025 kb on - strandat 32.025 kb on - strandat 32.037 kb on - strandat 32.047 kb on + strandat 32.132 kb on - strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.137 kb on + strand, within BACOVA_00596at 32.138 kb on - strand, within BACOVA_00596at 32.141 kb on + strand, within BACOVA_00596at 32.146 kb on + strand, within BACOVA_00596at 32.147 kb on - strand, within BACOVA_00596at 32.147 kb on - strand, within BACOVA_00596at 32.203 kb on + strand, within BACOVA_00596at 32.273 kb on + strand, within BACOVA_00596at 32.361 kb on - strand, within BACOVA_00596at 32.514 kb on - strand, within BACOVA_00596at 32.551 kb on - strandat 32.563 kb on + strandat 32.582 kb on + strandat 32.582 kb on + strandat 32.583 kb on - strandat 32.583 kb on - strandat 32.587 kb on + strandat 32.588 kb on - strandat 32.597 kb on + strandat 32.598 kb on - strandat 32.601 kb on + strandat 32.604 kb on + strandat 32.605 kb on - strandat 32.608 kb on + strandat 32.615 kb on + strandat 32.618 kb on + strandat 32.631 kb on + strandat 32.640 kb on - strandat 32.653 kb on - strandat 32.659 kb on + strandat 32.659 kb on + strandat 32.669 kb on - strandat 32.672 kb on + strandat 32.672 kb on + strandat 32.718 kb on - strandat 32.742 kb on + strandat 32.798 kb on - strandat 32.812 kb on + strandat 32.813 kb on - strandat 32.816 kb on + strandat 32.853 kb on - strandat 32.856 kb on - strandat 32.902 kb on + strand, within BACOVA_00597at 32.921 kb on + strand, within BACOVA_00597at 32.942 kb on + strand, within BACOVA_00597at 32.988 kb on - strand, within BACOVA_00597at 33.011 kb on + strand, within BACOVA_00597at 33.018 kb on - strand, within BACOVA_00597at 33.031 kb on - strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.042 kb on - strand, within BACOVA_00597at 33.099 kb on + strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.111 kb on - strand, within BACOVA_00597at 33.171 kb on + strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.248 kb on + strand, within BACOVA_00597at 33.249 kb on - strand, within BACOVA_00597at 33.253 kb on - strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.437 kb on - strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.455 kb on - strand, within BACOVA_00597at 33.487 kb on + strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.505 kb on + strand, within BACOVA_00597at 33.506 kb on - strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.522 kb on - strand, within BACOVA_00597at 33.548 kb on + strand, within BACOVA_00597at 33.552 kb on - strand, within BACOVA_00597at 33.565 kb on - strand, within BACOVA_00597

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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31,362 - -1.2
31,362 - -2.6
31,461 + BACOVA_00595 0.15 +0.1
31,461 + BACOVA_00595 0.15 +0.3
31,461 + BACOVA_00595 0.15 +1.0
31,463 + BACOVA_00595 0.15 +0.0
31,463 + BACOVA_00595 0.15 +0.4
31,499 - BACOVA_00595 0.21 -1.7
31,502 - BACOVA_00595 0.22 -0.3
31,505 - BACOVA_00595 0.23 -0.1
31,544 + BACOVA_00595 0.29 -0.1
31,544 + BACOVA_00595 0.29 -1.2
31,569 - BACOVA_00595 0.34 +0.6
31,618 - BACOVA_00595 0.43 +0.2
31,631 - BACOVA_00595 0.45 +1.4
31,631 - BACOVA_00595 0.45 +0.2
31,644 + BACOVA_00595 0.47 +0.8
31,712 - BACOVA_00595 0.59 -0.2
31,717 - BACOVA_00595 0.60 +0.0
31,719 - BACOVA_00595 0.60 -0.2
31,719 - BACOVA_00595 0.60 -1.2
31,719 - BACOVA_00595 0.60 -0.7
31,777 - BACOVA_00595 0.71 -0.9
31,784 - BACOVA_00595 0.72 -0.2
31,796 - BACOVA_00595 0.74 +0.3
31,809 + BACOVA_00595 0.76 -0.2
31,810 - BACOVA_00595 0.77 +0.8
31,814 - BACOVA_00595 0.77 -1.2
31,814 - BACOVA_00595 0.77 +0.5
31,814 - BACOVA_00595 0.77 -1.6
31,823 + BACOVA_00595 0.79 +0.3
31,823 + BACOVA_00595 0.79 -0.6
31,823 + BACOVA_00595 0.79 +0.4
31,858 + BACOVA_00595 0.85 +0.1
31,866 + BACOVA_00595 0.87 -1.2
31,868 + BACOVA_00595 0.87 -1.6
31,868 + BACOVA_00595 0.87 +0.5
31,967 + +0.5
31,967 + -0.3
31,967 + +0.6
31,968 - -0.8
32,002 + +0.5
32,024 + -0.0
32,025 - +0.4
32,025 - +0.6
32,037 - -1.2
32,047 + -0.4
32,132 - BACOVA_00596 0.11 -0.7
32,137 + BACOVA_00596 0.12 +1.0
32,137 + BACOVA_00596 0.12 +1.2
32,137 + BACOVA_00596 0.12 -1.1
32,138 - BACOVA_00596 0.12 +1.3
32,141 + BACOVA_00596 0.12 -1.1
32,146 + BACOVA_00596 0.13 +0.8
32,147 - BACOVA_00596 0.14 +2.0
32,147 - BACOVA_00596 0.14 +1.9
32,203 + BACOVA_00596 0.25 +0.2
32,273 + BACOVA_00596 0.39 +0.7
32,361 - BACOVA_00596 0.56 +1.8
32,514 - BACOVA_00596 0.87 +0.5
32,551 - +0.2
32,563 + +0.1
32,582 + -0.2
32,582 + +0.5
32,583 - +1.6
32,583 - -1.1
32,587 + +0.3
32,588 - -0.5
32,597 + -0.2
32,598 - +0.1
32,601 + -1.7
32,604 + +0.3
32,605 - -0.2
32,608 + -0.3
32,615 + +0.3
32,618 + +0.0
32,631 + -0.4
32,640 - -0.1
32,653 - +0.8
32,659 + +0.4
32,659 + +0.6
32,669 - +1.5
32,672 + +1.1
32,672 + -1.5
32,718 - +1.0
32,742 + -0.7
32,798 - +1.1
32,812 + +0.3
32,813 - -0.0
32,816 + -0.2
32,853 - -1.2
32,856 - -0.1
32,902 + BACOVA_00597 0.14 -1.2
32,921 + BACOVA_00597 0.16 +0.3
32,942 + BACOVA_00597 0.19 -2.8
32,988 - BACOVA_00597 0.24 -0.5
33,011 + BACOVA_00597 0.26 +0.4
33,018 - BACOVA_00597 0.27 -0.8
33,031 - BACOVA_00597 0.29 +0.2
33,041 + BACOVA_00597 0.30 -0.1
33,041 + BACOVA_00597 0.30 -1.3
33,042 - BACOVA_00597 0.30 -0.1
33,099 + BACOVA_00597 0.36 -1.2
33,100 - BACOVA_00597 0.36 -0.1
33,100 - BACOVA_00597 0.36 +0.9
33,111 - BACOVA_00597 0.38 -1.2
33,171 + BACOVA_00597 0.44 +0.5
33,189 - BACOVA_00597 0.46 -0.0
33,189 - BACOVA_00597 0.46 +1.5
33,200 + BACOVA_00597 0.48 -0.1
33,200 + BACOVA_00597 0.48 -0.4
33,248 + BACOVA_00597 0.53 -0.8
33,249 - BACOVA_00597 0.53 -1.1
33,253 - BACOVA_00597 0.54 +0.2
33,268 + BACOVA_00597 0.55 +0.0
33,268 + BACOVA_00597 0.55 +0.1
33,280 + BACOVA_00597 0.57 -0.1
33,280 + BACOVA_00597 0.57 -0.1
33,280 + BACOVA_00597 0.57 -1.1
33,281 - BACOVA_00597 0.57 -1.2
33,281 - BACOVA_00597 0.57 -1.2
33,437 - BACOVA_00597 0.74 -1.4
33,438 + BACOVA_00597 0.75 -0.5
33,438 + BACOVA_00597 0.75 +0.8
33,438 + BACOVA_00597 0.75 -1.2
33,439 - BACOVA_00597 0.75 +0.4
33,439 - BACOVA_00597 0.75 +0.2
33,455 - BACOVA_00597 0.76 -0.1
33,487 + BACOVA_00597 0.80 -0.4
33,488 - BACOVA_00597 0.80 +1.2
33,488 - BACOVA_00597 0.80 -1.2
33,488 - BACOVA_00597 0.80 +0.1
33,505 + BACOVA_00597 0.82 +1.0
33,506 - BACOVA_00597 0.82 +0.9
33,511 + BACOVA_00597 0.83 +0.0
33,511 + BACOVA_00597 0.83 -0.9
33,511 + BACOVA_00597 0.83 -0.5
33,511 + BACOVA_00597 0.83 +0.6
33,522 - BACOVA_00597 0.84 -0.2
33,548 + BACOVA_00597 0.87 -1.5
33,552 - BACOVA_00597 0.87 +0.2
33,565 - BACOVA_00597 0.89 -0.0

Or see this region's nucleotide sequence