Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00132

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00130 and BACOVA_00131 are separated by 33 nucleotidesBACOVA_00131 and BACOVA_00132 are separated by 154 nucleotidesBACOVA_00132 and BACOVA_00133 are separated by 248 nucleotidesBACOVA_00133 and BACOVA_00034 are separated by 432 nucleotides BACOVA_00130: BACOVA_00130 - hypothetical protein, at 176,065 to 176,670 _00130 BACOVA_00131: BACOVA_00131 - transporter, MotA/TolQ/ExbB proton channel family protein, at 176,704 to 177,501 _00131 BACOVA_00132: BACOVA_00132 - hypothetical protein, at 177,656 to 178,093 _00132 BACOVA_00133: BACOVA_00133 - 5S ribosomal RNA, at 178,342 to 178,452 _00133 BACOVA_00034: BACOVA_00034 - hypothetical protein, at 178,885 to 179,031 _00034 Position (kb) 177 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.681 kb on - strandat 176.706 kb on - strandat 176.712 kb on + strandat 176.789 kb on + strand, within BACOVA_00131at 176.789 kb on + strand, within BACOVA_00131at 176.790 kb on - strand, within BACOVA_00131at 176.795 kb on + strand, within BACOVA_00131at 176.796 kb on - strand, within BACOVA_00131at 176.926 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.974 kb on - strand, within BACOVA_00131at 176.977 kb on - strand, within BACOVA_00131at 177.006 kb on + strand, within BACOVA_00131at 177.070 kb on - strand, within BACOVA_00131at 177.102 kb on - strand, within BACOVA_00131at 177.105 kb on + strand, within BACOVA_00131at 177.106 kb on - strand, within BACOVA_00131at 177.122 kb on - strand, within BACOVA_00131at 177.125 kb on - strand, within BACOVA_00131at 177.211 kb on + strand, within BACOVA_00131at 177.219 kb on + strand, within BACOVA_00131at 177.307 kb on - strand, within BACOVA_00131at 177.309 kb on + strand, within BACOVA_00131at 177.310 kb on - strand, within BACOVA_00131at 177.314 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.332 kb on + strand, within BACOVA_00131at 177.336 kb on + strand, within BACOVA_00131at 177.382 kb on - strand, within BACOVA_00131at 177.400 kb on + strand, within BACOVA_00131at 177.417 kb on + strand, within BACOVA_00131at 177.421 kb on + strand, within BACOVA_00131at 177.422 kb on - strandat 177.427 kb on + strandat 177.434 kb on - strandat 177.448 kb on + strandat 177.473 kb on - strandat 177.518 kb on - strandat 177.535 kb on + strandat 177.535 kb on + strandat 177.539 kb on + strandat 177.539 kb on + strandat 177.575 kb on + strandat 177.591 kb on + strandat 177.617 kb on - strandat 177.623 kb on + strandat 177.623 kb on + strandat 177.658 kb on - strandat 177.661 kb on + strandat 177.661 kb on + strandat 177.662 kb on - strandat 177.662 kb on - strandat 177.675 kb on - strandat 177.687 kb on + strandat 177.687 kb on + strandat 177.704 kb on - strand, within BACOVA_00132at 177.704 kb on - strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.743 kb on - strand, within BACOVA_00132at 177.753 kb on - strand, within BACOVA_00132at 177.759 kb on - strand, within BACOVA_00132at 177.773 kb on + strand, within BACOVA_00132at 177.774 kb on - strand, within BACOVA_00132at 177.829 kb on + strand, within BACOVA_00132at 177.844 kb on + strand, within BACOVA_00132at 177.845 kb on - strand, within BACOVA_00132at 177.871 kb on + strand, within BACOVA_00132at 177.872 kb on - strand, within BACOVA_00132at 177.918 kb on + strand, within BACOVA_00132at 177.918 kb on + strand, within BACOVA_00132at 177.919 kb on - strand, within BACOVA_00132at 177.919 kb on - strand, within BACOVA_00132at 177.923 kb on - strand, within BACOVA_00132at 177.938 kb on + strand, within BACOVA_00132at 177.939 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.071 kb on - strandat 178.097 kb on - strandat 178.124 kb on - strandat 178.155 kb on - strandat 178.156 kb on + strandat 178.157 kb on - strandat 178.157 kb on - strandat 178.157 kb on - strandat 178.189 kb on - strandat 178.195 kb on + strandat 178.205 kb on - strandat 178.223 kb on - strandat 178.250 kb on - strandat 178.280 kb on + strandat 178.280 kb on + strandat 178.281 kb on - strandat 178.281 kb on - strandat 178.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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176,681 - +1.0
176,706 - +0.5
176,712 + +0.5
176,789 + BACOVA_00131 0.11 -0.0
176,789 + BACOVA_00131 0.11 +1.1
176,790 - BACOVA_00131 0.11 -0.0
176,795 + BACOVA_00131 0.11 +0.1
176,796 - BACOVA_00131 0.12 +1.3
176,926 - BACOVA_00131 0.28 +1.2
176,968 - BACOVA_00131 0.33 +0.8
176,968 - BACOVA_00131 0.33 +2.2
176,974 - BACOVA_00131 0.34 +1.1
176,977 - BACOVA_00131 0.34 +0.9
177,006 + BACOVA_00131 0.38 -0.3
177,070 - BACOVA_00131 0.46 -0.2
177,102 - BACOVA_00131 0.50 -0.2
177,105 + BACOVA_00131 0.50 -1.6
177,106 - BACOVA_00131 0.50 -0.6
177,122 - BACOVA_00131 0.52 +0.8
177,125 - BACOVA_00131 0.53 +1.1
177,211 + BACOVA_00131 0.64 -0.6
177,219 + BACOVA_00131 0.65 -0.3
177,307 - BACOVA_00131 0.76 +0.6
177,309 + BACOVA_00131 0.76 +0.6
177,310 - BACOVA_00131 0.76 -0.6
177,314 - BACOVA_00131 0.76 +0.4
177,322 - BACOVA_00131 0.77 -0.1
177,322 - BACOVA_00131 0.77 +0.7
177,332 + BACOVA_00131 0.79 -2.1
177,336 + BACOVA_00131 0.79 -1.0
177,382 - BACOVA_00131 0.85 +1.3
177,400 + BACOVA_00131 0.87 -0.9
177,417 + BACOVA_00131 0.89 -1.5
177,421 + BACOVA_00131 0.90 -0.7
177,422 - +0.6
177,427 + -0.6
177,434 - +0.8
177,448 + -0.2
177,473 - +0.5
177,518 - -0.3
177,535 + -0.7
177,535 + -0.1
177,539 + -0.8
177,539 + +0.3
177,575 + +0.8
177,591 + -0.8
177,617 - +0.8
177,623 + -2.8
177,623 + -0.7
177,658 - +0.8
177,661 + +0.4
177,661 + +0.9
177,662 - -0.0
177,662 - +0.4
177,675 - +1.0
177,687 + +0.2
177,687 + +0.1
177,704 - BACOVA_00132 0.11 -2.1
177,704 - BACOVA_00132 0.11 -0.7
177,711 + BACOVA_00132 0.13 +0.1
177,711 + BACOVA_00132 0.13 +0.4
177,711 + BACOVA_00132 0.13 +1.6
177,743 - BACOVA_00132 0.20 +0.3
177,753 - BACOVA_00132 0.22 -0.5
177,759 - BACOVA_00132 0.24 +0.5
177,773 + BACOVA_00132 0.27 -0.6
177,774 - BACOVA_00132 0.27 +0.7
177,829 + BACOVA_00132 0.39 -0.6
177,844 + BACOVA_00132 0.43 -0.7
177,845 - BACOVA_00132 0.43 +0.6
177,871 + BACOVA_00132 0.49 -1.3
177,872 - BACOVA_00132 0.49 -1.0
177,918 + BACOVA_00132 0.60 -0.8
177,918 + BACOVA_00132 0.60 -1.6
177,919 - BACOVA_00132 0.60 +0.5
177,919 - BACOVA_00132 0.60 +0.6
177,923 - BACOVA_00132 0.61 -0.8
177,938 + BACOVA_00132 0.64 -1.1
177,939 - BACOVA_00132 0.65 -0.6
178,047 - BACOVA_00132 0.89 +0.8
178,047 - BACOVA_00132 0.89 +0.2
178,047 - BACOVA_00132 0.89 -0.6
178,071 - -1.0
178,097 - -1.2
178,124 - -0.7
178,155 - +0.3
178,156 + -0.2
178,157 - -1.7
178,157 - -1.1
178,157 - -0.4
178,189 - +0.3
178,195 + -0.8
178,205 - -1.5
178,223 - +0.2
178,250 - +0.8
178,280 + -0.8
178,280 + -1.6
178,281 - -1.1
178,281 - +0.3
178,315 - -1.4

Or see this region's nucleotide sequence