Experiment: vio MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01756 and OHPLBJKB_01757 are separated by 235 nucleotides OHPLBJKB_01757 and OHPLBJKB_01758 are separated by 0 nucleotides
OHPLBJKB_01756: OHPLBJKB_01756 - Metal-binding protein ZinT, at 1,849,501 to 1,850,172
_01756
OHPLBJKB_01757: OHPLBJKB_01757 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 1,850,408 to 1,851,043
_01757
OHPLBJKB_01758: OHPLBJKB_01758 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 1,851,044 to 1,852,048
_01758
Position (kb)
1850
1851
1852 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1849.414 kb on - strand at 1849.414 kb on - strand at 1849.455 kb on + strand at 1849.469 kb on - strand at 1849.556 kb on + strand at 1849.556 kb on + strand at 1849.557 kb on - strand at 1849.840 kb on - strand, within OHPLBJKB_01756 at 1849.865 kb on + strand, within OHPLBJKB_01756 at 1850.054 kb on - strand, within OHPLBJKB_01756 at 1850.106 kb on + strand at 1850.116 kb on + strand at 1850.117 kb on - strand at 1850.117 kb on - strand at 1850.175 kb on + strand at 1850.175 kb on + strand at 1850.176 kb on - strand at 1850.176 kb on - strand at 1850.176 kb on - strand at 1850.176 kb on - strand at 1850.177 kb on + strand at 1850.186 kb on + strand at 1850.187 kb on - strand at 1850.187 kb on - strand at 1850.323 kb on + strand at 1850.387 kb on + strand at 1850.388 kb on - strand at 1850.402 kb on - strand at 1850.409 kb on + strand at 1850.409 kb on + strand at 1850.411 kb on + strand at 1850.411 kb on + strand at 1850.411 kb on + strand at 1850.411 kb on + strand at 1850.411 kb on + strand at 1850.412 kb on - strand at 1850.412 kb on - strand at 1850.412 kb on - strand at 1850.508 kb on + strand, within OHPLBJKB_01757 at 1850.508 kb on + strand, within OHPLBJKB_01757 at 1850.509 kb on - strand, within OHPLBJKB_01757 at 1850.509 kb on - strand, within OHPLBJKB_01757 at 1850.551 kb on - strand, within OHPLBJKB_01757 at 1850.555 kb on + strand, within OHPLBJKB_01757 at 1850.590 kb on + strand, within OHPLBJKB_01757 at 1850.652 kb on - strand, within OHPLBJKB_01757 at 1850.690 kb on + strand, within OHPLBJKB_01757 at 1850.690 kb on + strand, within OHPLBJKB_01757 at 1850.694 kb on + strand, within OHPLBJKB_01757 at 1850.708 kb on + strand, within OHPLBJKB_01757 at 1850.709 kb on - strand, within OHPLBJKB_01757 at 1850.721 kb on - strand, within OHPLBJKB_01757 at 1850.734 kb on + strand, within OHPLBJKB_01757 at 1850.761 kb on - strand, within OHPLBJKB_01757 at 1850.798 kb on + strand, within OHPLBJKB_01757 at 1850.799 kb on - strand, within OHPLBJKB_01757 at 1850.799 kb on - strand, within OHPLBJKB_01757 at 1850.823 kb on - strand, within OHPLBJKB_01757 at 1850.917 kb on + strand, within OHPLBJKB_01757 at 1851.205 kb on + strand, within OHPLBJKB_01758 at 1851.280 kb on + strand, within OHPLBJKB_01758 at 1851.280 kb on + strand, within OHPLBJKB_01758 at 1851.283 kb on + strand, within OHPLBJKB_01758 at 1851.283 kb on + strand, within OHPLBJKB_01758 at 1851.284 kb on - strand, within OHPLBJKB_01758 at 1851.284 kb on - strand, within OHPLBJKB_01758 at 1851.286 kb on + strand, within OHPLBJKB_01758 at 1851.286 kb on + strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.287 kb on - strand, within OHPLBJKB_01758 at 1851.438 kb on + strand, within OHPLBJKB_01758 at 1851.438 kb on + strand, within OHPLBJKB_01758 at 1851.438 kb on + strand, within OHPLBJKB_01758 at 1851.438 kb on + strand, within OHPLBJKB_01758 at 1851.439 kb on - strand, within OHPLBJKB_01758 at 1851.439 kb on - strand, within OHPLBJKB_01758 at 1851.444 kb on + strand, within OHPLBJKB_01758 at 1851.445 kb on - strand, within OHPLBJKB_01758 at 1851.501 kb on + strand, within OHPLBJKB_01758 at 1851.523 kb on - strand, within OHPLBJKB_01758 at 1851.523 kb on - strand, within OHPLBJKB_01758 at 1851.619 kb on + strand, within OHPLBJKB_01758 at 1851.628 kb on + strand, within OHPLBJKB_01758 at 1851.629 kb on - strand, within OHPLBJKB_01758 at 1851.629 kb on - strand, within OHPLBJKB_01758 at 1851.787 kb on + strand, within OHPLBJKB_01758 at 1851.802 kb on + strand, within OHPLBJKB_01758 at 1851.802 kb on + strand, within OHPLBJKB_01758 at 1851.907 kb on + strand, within OHPLBJKB_01758 at 1851.908 kb on - strand, within OHPLBJKB_01758 at 1851.908 kb on - strand, within OHPLBJKB_01758 at 1851.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI1 remove 1,849,414 - -0.4 1,849,414 - -0.4 1,849,455 + +1.0 1,849,469 - -0.6 1,849,556 + -0.5 1,849,556 + -1.0 1,849,557 - -0.5 1,849,840 - OHPLBJKB_01756 0.50 -0.4 1,849,865 + OHPLBJKB_01756 0.54 -0.3 1,850,054 - OHPLBJKB_01756 0.82 -0.7 1,850,106 + -1.0 1,850,116 + +1.0 1,850,117 - +1.0 1,850,117 - -0.8 1,850,175 + +2.5 1,850,175 + -1.0 1,850,176 - -0.8 1,850,176 - +1.6 1,850,176 - +0.3 1,850,176 - -0.9 1,850,177 + -0.0 1,850,186 + +1.0 1,850,187 - +0.4 1,850,187 - +0.3 1,850,323 + +0.5 1,850,387 + -1.1 1,850,388 - -0.4 1,850,402 - +1.4 1,850,409 + +0.3 1,850,409 + +0.4 1,850,411 + -0.5 1,850,411 + -1.4 1,850,411 + +0.0 1,850,411 + +0.5 1,850,411 + -1.0 1,850,412 - -2.5 1,850,412 - +0.4 1,850,412 - +0.5 1,850,508 + OHPLBJKB_01757 0.16 +0.1 1,850,508 + OHPLBJKB_01757 0.16 -0.2 1,850,509 - OHPLBJKB_01757 0.16 +0.2 1,850,509 - OHPLBJKB_01757 0.16 -0.2 1,850,551 - OHPLBJKB_01757 0.22 +0.2 1,850,555 + OHPLBJKB_01757 0.23 -0.0 1,850,590 + OHPLBJKB_01757 0.29 -0.4 1,850,652 - OHPLBJKB_01757 0.38 -0.1 1,850,690 + OHPLBJKB_01757 0.44 +0.3 1,850,690 + OHPLBJKB_01757 0.44 -1.1 1,850,694 + OHPLBJKB_01757 0.45 +0.8 1,850,708 + OHPLBJKB_01757 0.47 -0.4 1,850,709 - OHPLBJKB_01757 0.47 +1.5 1,850,721 - OHPLBJKB_01757 0.49 -0.2 1,850,734 + OHPLBJKB_01757 0.51 -1.1 1,850,761 - OHPLBJKB_01757 0.56 +1.0 1,850,798 + OHPLBJKB_01757 0.61 -0.7 1,850,799 - OHPLBJKB_01757 0.61 +0.4 1,850,799 - OHPLBJKB_01757 0.61 -0.6 1,850,823 - OHPLBJKB_01757 0.65 +1.0 1,850,917 + OHPLBJKB_01757 0.80 -1.0 1,851,205 + OHPLBJKB_01758 0.16 -0.1 1,851,280 + OHPLBJKB_01758 0.23 -1.0 1,851,280 + OHPLBJKB_01758 0.23 +0.6 1,851,283 + OHPLBJKB_01758 0.24 +0.4 1,851,283 + OHPLBJKB_01758 0.24 -0.7 1,851,284 - OHPLBJKB_01758 0.24 -1.7 1,851,284 - OHPLBJKB_01758 0.24 +0.1 1,851,286 + OHPLBJKB_01758 0.24 -0.9 1,851,286 + OHPLBJKB_01758 0.24 +1.0 1,851,287 - OHPLBJKB_01758 0.24 +2.9 1,851,287 - OHPLBJKB_01758 0.24 -1.8 1,851,287 - OHPLBJKB_01758 0.24 -0.9 1,851,287 - OHPLBJKB_01758 0.24 +0.3 1,851,287 - OHPLBJKB_01758 0.24 -0.2 1,851,287 - OHPLBJKB_01758 0.24 +0.3 1,851,438 + OHPLBJKB_01758 0.39 -0.8 1,851,438 + OHPLBJKB_01758 0.39 +1.0 1,851,438 + OHPLBJKB_01758 0.39 +0.1 1,851,438 + OHPLBJKB_01758 0.39 -0.5 1,851,439 - OHPLBJKB_01758 0.39 -0.8 1,851,439 - OHPLBJKB_01758 0.39 +0.5 1,851,444 + OHPLBJKB_01758 0.40 -1.1 1,851,445 - OHPLBJKB_01758 0.40 +0.0 1,851,501 + OHPLBJKB_01758 0.45 +1.5 1,851,523 - OHPLBJKB_01758 0.48 +0.2 1,851,523 - OHPLBJKB_01758 0.48 +0.1 1,851,619 + OHPLBJKB_01758 0.57 +0.9 1,851,628 + OHPLBJKB_01758 0.58 -0.3 1,851,629 - OHPLBJKB_01758 0.58 +0.5 1,851,629 - OHPLBJKB_01758 0.58 +0.9 1,851,787 + OHPLBJKB_01758 0.74 -0.7 1,851,802 + OHPLBJKB_01758 0.75 -1.3 1,851,802 + OHPLBJKB_01758 0.75 +0.8 1,851,907 + OHPLBJKB_01758 0.86 +0.7 1,851,908 - OHPLBJKB_01758 0.86 -0.3 1,851,908 - OHPLBJKB_01758 0.86 +0.0 1,851,992 - -0.3
Or see this region's nucleotide sequence