Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00616

Experiment: vio MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00615 and OHPLBJKB_00616 are separated by 78 nucleotidesOHPLBJKB_00616 and OHPLBJKB_00617 are separated by 76 nucleotidesOHPLBJKB_00617 and OHPLBJKB_00618 are separated by 84 nucleotides OHPLBJKB_00615: OHPLBJKB_00615 - scyllo-inositol 2-dehydrogenase (NADP(+)) IolU, at 629,268 to 630,254 _00615 OHPLBJKB_00616: OHPLBJKB_00616 - hypothetical protein, at 630,333 to 631,016 _00616 OHPLBJKB_00617: OHPLBJKB_00617 - UTP pyrophosphatase, at 631,093 to 631,596 _00617 OHPLBJKB_00618: OHPLBJKB_00618 - Ribosomal RNA large subunit methyltransferase G, at 631,681 to 632,817 _00618 Position (kb) 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 629.414 kb on - strand, within OHPLBJKB_00615at 629.423 kb on + strand, within OHPLBJKB_00615at 629.423 kb on + strand, within OHPLBJKB_00615at 629.423 kb on + strand, within OHPLBJKB_00615at 629.423 kb on + strand, within OHPLBJKB_00615at 629.424 kb on - strand, within OHPLBJKB_00615at 629.424 kb on - strand, within OHPLBJKB_00615at 629.424 kb on - strand, within OHPLBJKB_00615at 629.424 kb on - strand, within OHPLBJKB_00615at 629.426 kb on + strand, within OHPLBJKB_00615at 629.426 kb on + strand, within OHPLBJKB_00615at 629.427 kb on - strand, within OHPLBJKB_00615at 629.427 kb on - strand, within OHPLBJKB_00615at 629.427 kb on - strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.429 kb on + strand, within OHPLBJKB_00615at 629.430 kb on - strand, within OHPLBJKB_00615at 629.430 kb on - strand, within OHPLBJKB_00615at 629.430 kb on - strand, within OHPLBJKB_00615at 629.430 kb on - strand, within OHPLBJKB_00615at 629.682 kb on + strand, within OHPLBJKB_00615at 629.707 kb on + strand, within OHPLBJKB_00615at 629.707 kb on + strand, within OHPLBJKB_00615at 629.723 kb on + strand, within OHPLBJKB_00615at 629.735 kb on + strand, within OHPLBJKB_00615at 629.780 kb on - strand, within OHPLBJKB_00615at 629.800 kb on + strand, within OHPLBJKB_00615at 629.800 kb on + strand, within OHPLBJKB_00615at 629.810 kb on - strand, within OHPLBJKB_00615at 629.891 kb on + strand, within OHPLBJKB_00615at 629.996 kb on + strand, within OHPLBJKB_00615at 629.997 kb on - strand, within OHPLBJKB_00615at 630.051 kb on - strand, within OHPLBJKB_00615at 630.052 kb on + strand, within OHPLBJKB_00615at 630.052 kb on + strand, within OHPLBJKB_00615at 630.052 kb on + strand, within OHPLBJKB_00615at 630.052 kb on + strand, within OHPLBJKB_00615at 630.053 kb on - strand, within OHPLBJKB_00615at 630.053 kb on - strand, within OHPLBJKB_00615at 630.053 kb on - strand, within OHPLBJKB_00615at 630.160 kb on + strandat 630.161 kb on - strandat 630.161 kb on - strandat 630.162 kb on + strandat 630.162 kb on + strandat 630.162 kb on + strandat 630.163 kb on - strandat 630.178 kb on + strandat 630.178 kb on + strandat 630.178 kb on + strandat 630.179 kb on - strandat 630.179 kb on - strandat 630.179 kb on - strandat 630.182 kb on + strandat 630.249 kb on + strandat 630.249 kb on + strandat 630.250 kb on - strandat 630.255 kb on - strandat 630.273 kb on - strandat 630.294 kb on + strandat 630.294 kb on + strandat 630.294 kb on + strandat 630.294 kb on + strandat 630.294 kb on + strandat 630.295 kb on - strandat 630.295 kb on - strandat 630.295 kb on - strandat 630.295 kb on - strandat 630.295 kb on - strandat 630.327 kb on + strandat 630.328 kb on - strandat 630.335 kb on - strandat 630.335 kb on - strandat 630.362 kb on + strandat 630.394 kb on + strandat 630.394 kb on + strandat 630.394 kb on + strandat 630.485 kb on + strand, within OHPLBJKB_00616at 630.486 kb on - strand, within OHPLBJKB_00616at 630.503 kb on + strand, within OHPLBJKB_00616at 630.557 kb on + strand, within OHPLBJKB_00616at 630.576 kb on - strand, within OHPLBJKB_00616at 630.585 kb on - strand, within OHPLBJKB_00616at 630.701 kb on + strand, within OHPLBJKB_00616at 630.702 kb on - strand, within OHPLBJKB_00616at 630.702 kb on - strand, within OHPLBJKB_00616at 630.744 kb on + strand, within OHPLBJKB_00616at 630.744 kb on + strand, within OHPLBJKB_00616at 630.745 kb on - strand, within OHPLBJKB_00616at 630.745 kb on - strand, within OHPLBJKB_00616at 630.745 kb on - strand, within OHPLBJKB_00616at 630.745 kb on - strand, within OHPLBJKB_00616at 630.775 kb on + strand, within OHPLBJKB_00616at 630.797 kb on + strand, within OHPLBJKB_00616at 630.797 kb on + strand, within OHPLBJKB_00616at 630.798 kb on - strand, within OHPLBJKB_00616at 630.812 kb on - strand, within OHPLBJKB_00616at 630.840 kb on + strand, within OHPLBJKB_00616at 630.943 kb on - strand, within OHPLBJKB_00616at 630.944 kb on + strand, within OHPLBJKB_00616at 630.944 kb on + strand, within OHPLBJKB_00616at 630.944 kb on + strand, within OHPLBJKB_00616at 630.945 kb on - strand, within OHPLBJKB_00616at 630.945 kb on - strand, within OHPLBJKB_00616at 630.968 kb on + strandat 630.969 kb on - strandat 630.992 kb on + strandat 630.992 kb on + strandat 630.993 kb on - strandat 631.173 kb on + strand, within OHPLBJKB_00617at 631.174 kb on - strand, within OHPLBJKB_00617at 631.203 kb on + strand, within OHPLBJKB_00617at 631.204 kb on - strand, within OHPLBJKB_00617at 631.248 kb on + strand, within OHPLBJKB_00617at 631.248 kb on + strand, within OHPLBJKB_00617at 631.249 kb on - strand, within OHPLBJKB_00617at 631.253 kb on - strand, within OHPLBJKB_00617at 631.344 kb on + strand, within OHPLBJKB_00617at 631.344 kb on + strand, within OHPLBJKB_00617at 631.345 kb on - strand, within OHPLBJKB_00617at 631.345 kb on - strand, within OHPLBJKB_00617at 631.349 kb on - strand, within OHPLBJKB_00617at 631.366 kb on + strand, within OHPLBJKB_00617at 631.380 kb on + strand, within OHPLBJKB_00617at 631.380 kb on + strand, within OHPLBJKB_00617at 631.381 kb on - strand, within OHPLBJKB_00617at 631.381 kb on - strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.388 kb on + strand, within OHPLBJKB_00617at 631.389 kb on - strand, within OHPLBJKB_00617at 631.398 kb on + strand, within OHPLBJKB_00617at 631.446 kb on + strand, within OHPLBJKB_00617at 631.446 kb on + strand, within OHPLBJKB_00617at 631.447 kb on - strand, within OHPLBJKB_00617at 631.447 kb on - strand, within OHPLBJKB_00617at 631.475 kb on + strand, within OHPLBJKB_00617at 631.556 kb on - strandat 631.556 kb on - strandat 631.580 kb on + strandat 631.580 kb on + strandat 631.580 kb on + strandat 631.580 kb on + strandat 631.584 kb on + strandat 631.584 kb on + strandat 631.584 kb on + strandat 631.584 kb on + strandat 631.584 kb on + strandat 631.584 kb on + strandat 631.585 kb on - strandat 631.585 kb on - strandat 631.585 kb on - strandat 631.585 kb on - strandat 631.585 kb on - strandat 631.585 kb on - strandat 631.626 kb on + strandat 631.627 kb on - strandat 631.691 kb on + strandat 631.691 kb on + strandat 631.692 kb on - strandat 631.781 kb on - strandat 631.781 kb on - strandat 631.854 kb on - strand, within OHPLBJKB_00618at 631.875 kb on + strand, within OHPLBJKB_00618at 631.875 kb on + strand, within OHPLBJKB_00618at 631.875 kb on + strand, within OHPLBJKB_00618at 631.875 kb on + strand, within OHPLBJKB_00618at 631.875 kb on + strand, within OHPLBJKB_00618at 631.876 kb on - strand, within OHPLBJKB_00618at 631.900 kb on + strand, within OHPLBJKB_00618at 631.900 kb on + strand, within OHPLBJKB_00618at 631.900 kb on + strand, within OHPLBJKB_00618at 631.900 kb on + strand, within OHPLBJKB_00618at 631.901 kb on - strand, within OHPLBJKB_00618at 631.938 kb on - strand, within OHPLBJKB_00618

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI1
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629,414 - OHPLBJKB_00615 0.15 +1.0
629,423 + OHPLBJKB_00615 0.16 +0.6
629,423 + OHPLBJKB_00615 0.16 +1.5
629,423 + OHPLBJKB_00615 0.16 -0.3
629,423 + OHPLBJKB_00615 0.16 -1.4
629,424 - OHPLBJKB_00615 0.16 +0.2
629,424 - OHPLBJKB_00615 0.16 +0.5
629,424 - OHPLBJKB_00615 0.16 +0.4
629,424 - OHPLBJKB_00615 0.16 +1.1
629,426 + OHPLBJKB_00615 0.16 -0.6
629,426 + OHPLBJKB_00615 0.16 +0.5
629,427 - OHPLBJKB_00615 0.16 +1.3
629,427 - OHPLBJKB_00615 0.16 +0.9
629,427 - OHPLBJKB_00615 0.16 +0.3
629,429 + OHPLBJKB_00615 0.16 +1.1
629,429 + OHPLBJKB_00615 0.16 +0.3
629,429 + OHPLBJKB_00615 0.16 +0.2
629,429 + OHPLBJKB_00615 0.16 -1.1
629,429 + OHPLBJKB_00615 0.16 -0.1
629,429 + OHPLBJKB_00615 0.16 -1.9
629,429 + OHPLBJKB_00615 0.16 -2.1
629,430 - OHPLBJKB_00615 0.16 +0.7
629,430 - OHPLBJKB_00615 0.16 +7.5
629,430 - OHPLBJKB_00615 0.16 +0.8
629,430 - OHPLBJKB_00615 0.16 +0.6
629,682 + OHPLBJKB_00615 0.42 -0.7
629,707 + OHPLBJKB_00615 0.44 +1.4
629,707 + OHPLBJKB_00615 0.44 -2.3
629,723 + OHPLBJKB_00615 0.46 +0.7
629,735 + OHPLBJKB_00615 0.47 -1.0
629,780 - OHPLBJKB_00615 0.52 -1.2
629,800 + OHPLBJKB_00615 0.54 +1.0
629,800 + OHPLBJKB_00615 0.54 +0.3
629,810 - OHPLBJKB_00615 0.55 +0.0
629,891 + OHPLBJKB_00615 0.63 +0.0
629,996 + OHPLBJKB_00615 0.74 +0.2
629,997 - OHPLBJKB_00615 0.74 +0.7
630,051 - OHPLBJKB_00615 0.79 -0.4
630,052 + OHPLBJKB_00615 0.79 -0.5
630,052 + OHPLBJKB_00615 0.79 -0.2
630,052 + OHPLBJKB_00615 0.79 -0.3
630,052 + OHPLBJKB_00615 0.79 -0.1
630,053 - OHPLBJKB_00615 0.80 -0.3
630,053 - OHPLBJKB_00615 0.80 -0.8
630,053 - OHPLBJKB_00615 0.80 +0.7
630,160 + +0.1
630,161 - -0.5
630,161 - -1.5
630,162 + +0.1
630,162 + +0.9
630,162 + -0.3
630,163 - +0.2
630,178 + -0.0
630,178 + -0.3
630,178 + +0.4
630,179 - -2.0
630,179 - -0.2
630,179 - -0.4
630,182 + +0.6
630,249 + -0.7
630,249 + +0.7
630,250 - +0.3
630,255 - -0.2
630,273 - +1.3
630,294 + -0.9
630,294 + -0.3
630,294 + -0.9
630,294 + +0.6
630,294 + +0.4
630,295 - -1.7
630,295 - -1.6
630,295 - +0.8
630,295 - -0.5
630,295 - -1.7
630,327 + +0.0
630,328 - +0.2
630,335 - -1.3
630,335 - +0.3
630,362 + -0.1
630,394 + +0.1
630,394 + +0.8
630,394 + +0.3
630,485 + OHPLBJKB_00616 0.22 -1.6
630,486 - OHPLBJKB_00616 0.22 +0.6
630,503 + OHPLBJKB_00616 0.25 +0.1
630,557 + OHPLBJKB_00616 0.33 -0.5
630,576 - OHPLBJKB_00616 0.36 -0.0
630,585 - OHPLBJKB_00616 0.37 -0.7
630,701 + OHPLBJKB_00616 0.54 +1.7
630,702 - OHPLBJKB_00616 0.54 -0.4
630,702 - OHPLBJKB_00616 0.54 -1.0
630,744 + OHPLBJKB_00616 0.60 +0.0
630,744 + OHPLBJKB_00616 0.60 -0.1
630,745 - OHPLBJKB_00616 0.60 +0.5
630,745 - OHPLBJKB_00616 0.60 +0.2
630,745 - OHPLBJKB_00616 0.60 +1.1
630,745 - OHPLBJKB_00616 0.60 -1.0
630,775 + OHPLBJKB_00616 0.65 +0.1
630,797 + OHPLBJKB_00616 0.68 -0.4
630,797 + OHPLBJKB_00616 0.68 -0.6
630,798 - OHPLBJKB_00616 0.68 -0.6
630,812 - OHPLBJKB_00616 0.70 +0.0
630,840 + OHPLBJKB_00616 0.74 -0.8
630,943 - OHPLBJKB_00616 0.89 -0.2
630,944 + OHPLBJKB_00616 0.89 +0.0
630,944 + OHPLBJKB_00616 0.89 -0.7
630,944 + OHPLBJKB_00616 0.89 -0.7
630,945 - OHPLBJKB_00616 0.89 -0.2
630,945 - OHPLBJKB_00616 0.89 -1.2
630,968 + -0.1
630,969 - +0.3
630,992 + +1.6
630,992 + +0.5
630,993 - -1.0
631,173 + OHPLBJKB_00617 0.16 +0.3
631,174 - OHPLBJKB_00617 0.16 -0.5
631,203 + OHPLBJKB_00617 0.22 +0.0
631,204 - OHPLBJKB_00617 0.22 -0.3
631,248 + OHPLBJKB_00617 0.31 +0.7
631,248 + OHPLBJKB_00617 0.31 +0.6
631,249 - OHPLBJKB_00617 0.31 -0.1
631,253 - OHPLBJKB_00617 0.32 +0.5
631,344 + OHPLBJKB_00617 0.50 -1.6
631,344 + OHPLBJKB_00617 0.50 -0.9
631,345 - OHPLBJKB_00617 0.50 +0.7
631,345 - OHPLBJKB_00617 0.50 +0.2
631,349 - OHPLBJKB_00617 0.51 -0.3
631,366 + OHPLBJKB_00617 0.54 -1.9
631,380 + OHPLBJKB_00617 0.57 +0.0
631,380 + OHPLBJKB_00617 0.57 -0.1
631,381 - OHPLBJKB_00617 0.57 +0.2
631,381 - OHPLBJKB_00617 0.57 +1.2
631,388 + OHPLBJKB_00617 0.59 -0.3
631,388 + OHPLBJKB_00617 0.59 -0.0
631,388 + OHPLBJKB_00617 0.59 +0.3
631,388 + OHPLBJKB_00617 0.59 +0.7
631,388 + OHPLBJKB_00617 0.59 +0.0
631,388 + OHPLBJKB_00617 0.59 -0.4
631,388 + OHPLBJKB_00617 0.59 -0.1
631,388 + OHPLBJKB_00617 0.59 -0.1
631,389 - OHPLBJKB_00617 0.59 -0.2
631,398 + OHPLBJKB_00617 0.61 +1.0
631,446 + OHPLBJKB_00617 0.70 -0.5
631,446 + OHPLBJKB_00617 0.70 -0.2
631,447 - OHPLBJKB_00617 0.70 -0.5
631,447 - OHPLBJKB_00617 0.70 +0.0
631,475 + OHPLBJKB_00617 0.76 +1.4
631,556 - -0.0
631,556 - +0.3
631,580 + -0.1
631,580 + -0.6
631,580 + +1.0
631,580 + -1.3
631,584 + +0.7
631,584 + -1.4
631,584 + -0.3
631,584 + -1.7
631,584 + -0.1
631,584 + +0.6
631,585 - +0.6
631,585 - +0.6
631,585 - -0.5
631,585 - -0.3
631,585 - -0.4
631,585 - -0.4
631,626 + +0.2
631,627 - -0.2
631,691 + +4.0
631,691 + +0.4
631,692 - +0.6
631,781 - +1.3
631,781 - +0.2
631,854 - OHPLBJKB_00618 0.15 +0.5
631,875 + OHPLBJKB_00618 0.17 -1.3
631,875 + OHPLBJKB_00618 0.17 -1.3
631,875 + OHPLBJKB_00618 0.17 -1.1
631,875 + OHPLBJKB_00618 0.17 -0.5
631,875 + OHPLBJKB_00618 0.17 -2.0
631,876 - OHPLBJKB_00618 0.17 -0.3
631,900 + OHPLBJKB_00618 0.19 +0.0
631,900 + OHPLBJKB_00618 0.19 +0.6
631,900 + OHPLBJKB_00618 0.19 -0.6
631,900 + OHPLBJKB_00618 0.19 -0.1
631,901 - OHPLBJKB_00618 0.19 +0.6
631,938 - OHPLBJKB_00618 0.23 -0.1

Or see this region's nucleotide sequence