Experiment: marine_broth_2216 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04562 and BACOVA_04563 are separated by 136 nucleotides BACOVA_04563 and BACOVA_04564 are separated by 159 nucleotides BACOVA_04564 and BACOVA_04565 are separated by 134 nucleotides
BACOVA_04562: BACOVA_04562 - hypothetical protein, at 505,194 to 508,352
_04562
BACOVA_04563: BACOVA_04563 - Beta-eliminating lyase, at 508,489 to 509,526
_04563
BACOVA_04564: BACOVA_04564 - hypothetical protein, at 509,686 to 509,904
_04564
BACOVA_04565: BACOVA_04565 - thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein, at 510,039 to 511,880
_04565
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.512 kb on + strand, within BACOVA_04562 at 507.514 kb on + strand, within BACOVA_04562 at 507.515 kb on - strand, within BACOVA_04562 at 507.520 kb on - strand, within BACOVA_04562 at 507.585 kb on - strand, within BACOVA_04562 at 507.595 kb on + strand, within BACOVA_04562 at 507.595 kb on + strand, within BACOVA_04562 at 507.596 kb on - strand, within BACOVA_04562 at 507.596 kb on - strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.622 kb on + strand, within BACOVA_04562 at 507.625 kb on - strand, within BACOVA_04562 at 507.654 kb on + strand, within BACOVA_04562 at 507.654 kb on + strand, within BACOVA_04562 at 507.678 kb on + strand, within BACOVA_04562 at 507.685 kb on + strand, within BACOVA_04562 at 507.686 kb on - strand, within BACOVA_04562 at 507.687 kb on + strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.693 kb on - strand, within BACOVA_04562 at 507.693 kb on - strand, within BACOVA_04562 at 507.709 kb on - strand, within BACOVA_04562 at 507.714 kb on - strand, within BACOVA_04562 at 507.732 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.794 kb on - strand, within BACOVA_04562 at 507.822 kb on - strand, within BACOVA_04562 at 507.822 kb on - strand, within BACOVA_04562 at 507.827 kb on + strand, within BACOVA_04562 at 507.827 kb on + strand, within BACOVA_04562 at 507.843 kb on - strand, within BACOVA_04562 at 507.871 kb on - strand, within BACOVA_04562 at 507.928 kb on + strand, within BACOVA_04562 at 507.944 kb on + strand, within BACOVA_04562 at 507.947 kb on + strand, within BACOVA_04562 at 507.947 kb on + strand, within BACOVA_04562 at 507.948 kb on - strand, within BACOVA_04562 at 507.960 kb on - strand, within BACOVA_04562 at 507.962 kb on + strand, within BACOVA_04562 at 507.962 kb on + strand, within BACOVA_04562 at 507.963 kb on - strand, within BACOVA_04562 at 507.963 kb on - strand, within BACOVA_04562 at 507.986 kb on + strand, within BACOVA_04562 at 508.068 kb on + strand at 508.070 kb on + strand at 508.085 kb on + strand at 508.088 kb on + strand at 508.088 kb on + strand at 508.088 kb on + strand at 508.089 kb on - strand at 508.089 kb on - strand at 508.100 kb on + strand at 508.132 kb on + strand at 508.146 kb on - strand at 508.166 kb on + strand at 508.166 kb on + strand at 508.189 kb on + strand at 508.190 kb on - strand at 508.190 kb on - strand at 508.191 kb on + strand at 508.191 kb on + strand at 508.247 kb on + strand at 508.247 kb on + strand at 508.253 kb on + strand at 508.329 kb on + strand at 508.332 kb on - strand at 508.353 kb on - strand at 508.353 kb on - strand at 508.356 kb on + strand at 508.357 kb on - strand at 508.357 kb on - strand at 508.392 kb on + strand at 508.401 kb on + strand at 508.417 kb on + strand at 508.420 kb on - strand at 508.449 kb on - strand at 508.461 kb on + strand at 508.462 kb on - strand at 508.510 kb on + strand at 508.520 kb on - strand at 508.521 kb on + strand at 508.521 kb on + strand at 508.560 kb on + strand at 508.608 kb on - strand, within BACOVA_04563 at 508.608 kb on - strand, within BACOVA_04563 at 508.654 kb on + strand, within BACOVA_04563 at 508.662 kb on + strand, within BACOVA_04563 at 508.663 kb on - strand, within BACOVA_04563 at 508.726 kb on - strand, within BACOVA_04563 at 508.767 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.803 kb on - strand, within BACOVA_04563 at 508.836 kb on + strand, within BACOVA_04563 at 508.836 kb on + strand, within BACOVA_04563 at 508.876 kb on + strand, within BACOVA_04563 at 508.926 kb on + strand, within BACOVA_04563 at 509.017 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.022 kb on - strand, within BACOVA_04563 at 509.022 kb on - strand, within BACOVA_04563 at 509.025 kb on + strand, within BACOVA_04563 at 509.025 kb on + strand, within BACOVA_04563 at 509.026 kb on - strand, within BACOVA_04563 at 509.074 kb on - strand, within BACOVA_04563 at 509.075 kb on + strand, within BACOVA_04563 at 509.075 kb on + strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.109 kb on - strand, within BACOVA_04563 at 509.178 kb on + strand, within BACOVA_04563 at 509.197 kb on - strand, within BACOVA_04563 at 509.256 kb on - strand, within BACOVA_04563 at 509.259 kb on + strand, within BACOVA_04563 at 509.259 kb on + strand, within BACOVA_04563 at 509.260 kb on - strand, within BACOVA_04563 at 509.283 kb on + strand, within BACOVA_04563 at 509.318 kb on - strand, within BACOVA_04563 at 509.341 kb on - strand, within BACOVA_04563 at 509.412 kb on + strand, within BACOVA_04563 at 509.413 kb on - strand, within BACOVA_04563 at 509.440 kb on + strand at 509.440 kb on + strand at 509.440 kb on + strand at 509.441 kb on - strand at 509.441 kb on - strand at 509.442 kb on + strand at 509.443 kb on - strand at 509.529 kb on + strand at 509.530 kb on - strand at 509.583 kb on + strand at 509.584 kb on - strand at 509.584 kb on - strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.588 kb on - strand at 509.632 kb on + strand at 509.632 kb on + strand at 509.633 kb on - strand at 509.633 kb on - strand at 509.696 kb on + strand at 509.697 kb on - strand at 509.697 kb on - strand at 509.715 kb on - strand, within BACOVA_04564 at 509.715 kb on - strand, within BACOVA_04564 at 509.716 kb on + strand, within BACOVA_04564 at 509.716 kb on + strand, within BACOVA_04564 at 509.717 kb on - strand, within BACOVA_04564 at 509.720 kb on + strand, within BACOVA_04564 at 509.720 kb on + strand, within BACOVA_04564 at 509.721 kb on - strand, within BACOVA_04564 at 509.721 kb on - strand, within BACOVA_04564 at 509.749 kb on + strand, within BACOVA_04564 at 509.750 kb on - strand, within BACOVA_04564 at 509.750 kb on - strand, within BACOVA_04564 at 509.797 kb on - strand, within BACOVA_04564 at 509.797 kb on - strand, within BACOVA_04564 at 509.831 kb on + strand, within BACOVA_04564 at 509.832 kb on - strand, within BACOVA_04564 at 509.848 kb on - strand, within BACOVA_04564 at 509.853 kb on + strand, within BACOVA_04564 at 509.929 kb on - strand at 509.931 kb on + strand at 509.932 kb on - strand at 509.932 kb on - strand at 509.987 kb on + strand at 509.987 kb on + strand at 509.988 kb on - strand at 509.988 kb on - strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.074 kb on + strand at 510.075 kb on - strand at 510.113 kb on - strand at 510.134 kb on + strand at 510.140 kb on + strand at 510.141 kb on - strand at 510.169 kb on + strand at 510.173 kb on + strand at 510.173 kb on + strand at 510.173 kb on + strand at 510.174 kb on - strand at 510.204 kb on + strand at 510.204 kb on + strand at 510.205 kb on - strand at 510.235 kb on + strand, within BACOVA_04565 at 510.274 kb on + strand, within BACOVA_04565 at 510.397 kb on - strand, within BACOVA_04565 at 510.440 kb on + strand, within BACOVA_04565 at 510.489 kb on - strand, within BACOVA_04565 at 510.516 kb on + strand, within BACOVA_04565 at 510.520 kb on - strand, within BACOVA_04565
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media remove 507,512 + BACOVA_04562 0.73 -0.1 507,514 + BACOVA_04562 0.73 +2.2 507,515 - BACOVA_04562 0.73 -0.7 507,520 - BACOVA_04562 0.74 +0.9 507,585 - BACOVA_04562 0.76 -0.2 507,595 + BACOVA_04562 0.76 -1.5 507,595 + BACOVA_04562 0.76 -0.3 507,596 - BACOVA_04562 0.76 -0.1 507,596 - BACOVA_04562 0.76 +0.3 507,620 + BACOVA_04562 0.77 -0.3 507,620 + BACOVA_04562 0.77 +0.1 507,620 + BACOVA_04562 0.77 +0.1 507,622 + BACOVA_04562 0.77 +0.6 507,625 - BACOVA_04562 0.77 -2.4 507,654 + BACOVA_04562 0.78 -0.7 507,654 + BACOVA_04562 0.78 +0.5 507,678 + BACOVA_04562 0.79 +0.6 507,685 + BACOVA_04562 0.79 +0.5 507,686 - BACOVA_04562 0.79 +0.5 507,687 + BACOVA_04562 0.79 +0.5 507,688 - BACOVA_04562 0.79 +0.9 507,688 - BACOVA_04562 0.79 +0.4 507,688 - BACOVA_04562 0.79 -0.1 507,688 - BACOVA_04562 0.79 -2.2 507,688 - BACOVA_04562 0.79 -2.7 507,693 - BACOVA_04562 0.79 +0.3 507,693 - BACOVA_04562 0.79 -0.5 507,709 - BACOVA_04562 0.80 +0.3 507,714 - BACOVA_04562 0.80 -0.7 507,732 + BACOVA_04562 0.80 +0.0 507,793 + BACOVA_04562 0.82 -1.2 507,793 + BACOVA_04562 0.82 +0.4 507,793 + BACOVA_04562 0.82 +0.3 507,794 - BACOVA_04562 0.82 -0.1 507,822 - BACOVA_04562 0.83 +0.4 507,822 - BACOVA_04562 0.83 +0.1 507,827 + BACOVA_04562 0.83 +0.6 507,827 + BACOVA_04562 0.83 +0.9 507,843 - BACOVA_04562 0.84 -0.6 507,871 - BACOVA_04562 0.85 -2.4 507,928 + BACOVA_04562 0.87 -0.4 507,944 + BACOVA_04562 0.87 +0.4 507,947 + BACOVA_04562 0.87 -0.8 507,947 + BACOVA_04562 0.87 -1.0 507,948 - BACOVA_04562 0.87 -1.4 507,960 - BACOVA_04562 0.88 -0.3 507,962 + BACOVA_04562 0.88 -2.0 507,962 + BACOVA_04562 0.88 +0.9 507,963 - BACOVA_04562 0.88 -0.2 507,963 - BACOVA_04562 0.88 +0.8 507,986 + BACOVA_04562 0.88 +1.1 508,068 + +0.4 508,070 + -0.3 508,085 + +1.1 508,088 + -0.4 508,088 + +0.1 508,088 + +1.9 508,089 - +0.2 508,089 - -0.3 508,100 + +0.2 508,132 + -0.7 508,146 - -2.0 508,166 + -0.9 508,166 + -0.5 508,189 + +0.1 508,190 - +1.4 508,190 - +0.3 508,191 + +0.5 508,191 + -0.4 508,247 + +0.1 508,247 + -0.8 508,253 + +0.0 508,329 + -0.5 508,332 - -1.6 508,353 - -0.0 508,353 - -1.1 508,356 + +0.3 508,357 - +0.3 508,357 - -0.5 508,392 + -0.7 508,401 + -0.8 508,417 + -0.7 508,420 - -0.1 508,449 - +1.2 508,461 + -1.1 508,462 - +0.3 508,510 + -0.5 508,520 - -0.3 508,521 + -0.8 508,521 + +1.1 508,560 + -0.3 508,608 - BACOVA_04563 0.11 -0.5 508,608 - BACOVA_04563 0.11 -0.5 508,654 + BACOVA_04563 0.16 +1.1 508,662 + BACOVA_04563 0.17 +0.1 508,663 - BACOVA_04563 0.17 +0.1 508,726 - BACOVA_04563 0.23 -0.1 508,767 + BACOVA_04563 0.27 +0.3 508,778 + BACOVA_04563 0.28 +0.4 508,778 + BACOVA_04563 0.28 +0.2 508,778 + BACOVA_04563 0.28 -0.8 508,803 - BACOVA_04563 0.30 -0.7 508,836 + BACOVA_04563 0.33 +0.9 508,836 + BACOVA_04563 0.33 +0.4 508,876 + BACOVA_04563 0.37 +0.6 508,926 + BACOVA_04563 0.42 +0.4 509,017 + BACOVA_04563 0.51 -1.4 509,021 + BACOVA_04563 0.51 -0.1 509,021 + BACOVA_04563 0.51 +0.0 509,021 + BACOVA_04563 0.51 +0.9 509,021 + BACOVA_04563 0.51 +0.6 509,022 - BACOVA_04563 0.51 +0.6 509,022 - BACOVA_04563 0.51 +0.2 509,025 + BACOVA_04563 0.52 +0.0 509,025 + BACOVA_04563 0.52 +1.1 509,026 - BACOVA_04563 0.52 -0.5 509,074 - BACOVA_04563 0.56 -0.2 509,075 + BACOVA_04563 0.56 +0.1 509,075 + BACOVA_04563 0.56 +0.0 509,076 - BACOVA_04563 0.57 -0.6 509,076 - BACOVA_04563 0.57 -2.2 509,076 - BACOVA_04563 0.57 +0.5 509,076 - BACOVA_04563 0.57 +0.2 509,109 - BACOVA_04563 0.60 -2.4 509,178 + BACOVA_04563 0.66 -0.1 509,197 - BACOVA_04563 0.68 -0.3 509,256 - BACOVA_04563 0.74 +0.2 509,259 + BACOVA_04563 0.74 -0.5 509,259 + BACOVA_04563 0.74 +0.9 509,260 - BACOVA_04563 0.74 +0.6 509,283 + BACOVA_04563 0.76 +0.1 509,318 - BACOVA_04563 0.80 -0.7 509,341 - BACOVA_04563 0.82 +0.0 509,412 + BACOVA_04563 0.89 -0.5 509,413 - BACOVA_04563 0.89 +1.5 509,440 + +1.9 509,440 + -0.2 509,440 + -0.6 509,441 - -0.3 509,441 - -0.3 509,442 + -0.3 509,443 - +1.4 509,529 + -0.2 509,530 - +1.0 509,583 + -1.3 509,584 - +0.1 509,584 - -0.4 509,587 + -0.5 509,587 + -0.2 509,587 + +0.0 509,587 + -0.3 509,588 - -0.5 509,632 + -0.7 509,632 + +1.0 509,633 - +0.9 509,633 - -0.6 509,696 + +0.3 509,697 - -0.7 509,697 - +1.4 509,715 - BACOVA_04564 0.13 -0.3 509,715 - BACOVA_04564 0.13 +0.3 509,716 + BACOVA_04564 0.14 +0.3 509,716 + BACOVA_04564 0.14 +0.4 509,717 - BACOVA_04564 0.14 +0.1 509,720 + BACOVA_04564 0.16 -1.0 509,720 + BACOVA_04564 0.16 -0.1 509,721 - BACOVA_04564 0.16 -0.6 509,721 - BACOVA_04564 0.16 +0.3 509,749 + BACOVA_04564 0.29 -0.7 509,750 - BACOVA_04564 0.29 -0.5 509,750 - BACOVA_04564 0.29 -0.8 509,797 - BACOVA_04564 0.51 -0.9 509,797 - BACOVA_04564 0.51 -0.2 509,831 + BACOVA_04564 0.66 -0.3 509,832 - BACOVA_04564 0.67 -0.0 509,848 - BACOVA_04564 0.74 -1.8 509,853 + BACOVA_04564 0.76 +0.1 509,929 - -0.1 509,931 + +0.4 509,932 - -0.7 509,932 - +0.6 509,987 + -1.1 509,987 + -0.5 509,988 - +1.4 509,988 - -0.0 510,061 + -0.2 510,061 + -0.4 510,074 + +1.3 510,075 - -0.9 510,113 - +0.1 510,134 + +0.3 510,140 + +0.1 510,141 - +0.3 510,169 + -0.4 510,173 + +0.4 510,173 + -0.2 510,173 + -0.1 510,174 - -0.3 510,204 + -0.2 510,204 + -1.1 510,205 - -0.1 510,235 + BACOVA_04565 0.11 -0.6 510,274 + BACOVA_04565 0.13 -1.0 510,397 - BACOVA_04565 0.19 +0.1 510,440 + BACOVA_04565 0.22 -0.1 510,489 - BACOVA_04565 0.24 +1.2 510,516 + BACOVA_04565 0.26 -0.7 510,520 - BACOVA_04565 0.26 +0.5
Or see this region's nucleotide sequence