Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03176

Experiment: marine_broth_2216 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03173 and BACOVA_03175 are separated by 26 nucleotidesBACOVA_03175 and BACOVA_03174 overlap by 26 nucleotidesBACOVA_03174 and BACOVA_03176 overlap by 4 nucleotidesBACOVA_03176 and BACOVA_03177 are separated by 19 nucleotides BACOVA_03173: BACOVA_03173 - sigma factor regulatory protein, FecR/PupR family, at 262,269 to 263,147 _03173 BACOVA_03175: BACOVA_03175 - hypothetical protein, at 263,174 to 263,608 _03175 BACOVA_03174: BACOVA_03174 - hypothetical protein, at 263,583 to 263,699 _03174 BACOVA_03176: BACOVA_03176 - RNA polymerase sigma-70 factor, at 263,696 to 264,250 _03176 BACOVA_03177: BACOVA_03177 - putative oxygen-independent coproporphyrinogen III oxidase, at 264,270 to 265,277 _03177 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1at 262.788 kb on + strand, within BACOVA_03173at 262.789 kb on - strand, within BACOVA_03173at 262.934 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.937 kb on - strand, within BACOVA_03173at 262.938 kb on + strand, within BACOVA_03173at 262.938 kb on + strand, within BACOVA_03173at 262.940 kb on + strand, within BACOVA_03173at 262.942 kb on + strand, within BACOVA_03173at 262.974 kb on + strand, within BACOVA_03173at 263.043 kb on + strand, within BACOVA_03173at 263.044 kb on - strand, within BACOVA_03173at 263.115 kb on + strandat 263.125 kb on - strandat 263.162 kb on - strandat 263.265 kb on - strand, within BACOVA_03175at 263.294 kb on - strand, within BACOVA_03175at 263.348 kb on + strand, within BACOVA_03175at 263.349 kb on - strand, within BACOVA_03175at 263.349 kb on - strand, within BACOVA_03175at 263.390 kb on + strand, within BACOVA_03175at 263.393 kb on + strand, within BACOVA_03175at 263.393 kb on + strand, within BACOVA_03175at 263.474 kb on + strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.506 kb on - strand, within BACOVA_03175at 263.636 kb on - strand, within BACOVA_03174at 263.768 kb on - strand, within BACOVA_03176at 263.779 kb on + strand, within BACOVA_03176at 263.796 kb on - strand, within BACOVA_03176at 263.803 kb on + strand, within BACOVA_03176at 263.804 kb on - strand, within BACOVA_03176at 263.806 kb on - strand, within BACOVA_03176at 263.837 kb on + strand, within BACOVA_03176at 263.845 kb on + strand, within BACOVA_03176at 263.846 kb on - strand, within BACOVA_03176at 263.881 kb on - strand, within BACOVA_03176at 263.925 kb on + strand, within BACOVA_03176at 263.926 kb on - strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.968 kb on - strand, within BACOVA_03176at 263.994 kb on + strand, within BACOVA_03176at 264.030 kb on + strand, within BACOVA_03176at 264.030 kb on + strand, within BACOVA_03176at 264.031 kb on - strand, within BACOVA_03176at 264.037 kb on - strand, within BACOVA_03176at 264.064 kb on + strand, within BACOVA_03176at 264.132 kb on + strand, within BACOVA_03176at 264.133 kb on - strand, within BACOVA_03176at 264.133 kb on - strand, within BACOVA_03176at 264.135 kb on + strand, within BACOVA_03176at 264.136 kb on - strand, within BACOVA_03176at 264.136 kb on - strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.139 kb on - strand, within BACOVA_03176at 264.139 kb on - strand, within BACOVA_03176at 264.285 kb on + strandat 264.286 kb on - strandat 264.297 kb on + strandat 264.297 kb on + strandat 264.298 kb on - strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.300 kb on - strandat 264.362 kb on + strandat 264.443 kb on + strand, within BACOVA_03177at 264.443 kb on + strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.479 kb on + strand, within BACOVA_03177at 264.511 kb on + strand, within BACOVA_03177at 264.512 kb on - strand, within BACOVA_03177at 264.543 kb on + strand, within BACOVA_03177at 264.543 kb on + strand, within BACOVA_03177at 264.545 kb on + strand, within BACOVA_03177at 264.546 kb on - strand, within BACOVA_03177at 264.546 kb on - strand, within BACOVA_03177at 264.552 kb on + strand, within BACOVA_03177at 264.552 kb on + strand, within BACOVA_03177at 264.554 kb on + strand, within BACOVA_03177at 264.554 kb on + strand, within BACOVA_03177at 264.556 kb on + strand, within BACOVA_03177at 264.556 kb on + strand, within BACOVA_03177at 264.557 kb on - strand, within BACOVA_03177at 264.557 kb on - strand, within BACOVA_03177at 264.631 kb on + strand, within BACOVA_03177at 264.631 kb on + strand, within BACOVA_03177at 264.631 kb on + strand, within BACOVA_03177at 264.650 kb on - strand, within BACOVA_03177at 264.670 kb on + strand, within BACOVA_03177at 264.704 kb on - strand, within BACOVA_03177at 264.736 kb on - strand, within BACOVA_03177at 264.804 kb on - strand, within BACOVA_03177at 264.804 kb on - strand, within BACOVA_03177at 264.807 kb on - strand, within BACOVA_03177at 264.808 kb on + strand, within BACOVA_03177at 264.808 kb on + strand, within BACOVA_03177at 264.808 kb on + strand, within BACOVA_03177at 264.809 kb on - strand, within BACOVA_03177at 264.810 kb on + strand, within BACOVA_03177at 264.812 kb on + strand, within BACOVA_03177at 264.812 kb on + strand, within BACOVA_03177at 264.813 kb on - strand, within BACOVA_03177at 264.818 kb on + strand, within BACOVA_03177at 264.819 kb on - strand, within BACOVA_03177at 264.829 kb on + strand, within BACOVA_03177at 264.851 kb on + strand, within BACOVA_03177at 264.851 kb on + strand, within BACOVA_03177at 264.851 kb on + strand, within BACOVA_03177at 264.851 kb on + strand, within BACOVA_03177at 264.851 kb on + strand, within BACOVA_03177at 264.852 kb on - strand, within BACOVA_03177at 264.852 kb on - strand, within BACOVA_03177at 264.939 kb on - strand, within BACOVA_03177at 264.992 kb on + strand, within BACOVA_03177at 265.017 kb on + strand, within BACOVA_03177at 265.159 kb on + strand, within BACOVA_03177at 265.160 kb on - strand, within BACOVA_03177at 265.176 kb on - strand, within BACOVA_03177at 265.182 kb on + strandat 265.246 kb on - strandat 265.246 kb on - strandat 265.246 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
remove
262,788 + BACOVA_03173 0.59 +0.7
262,789 - BACOVA_03173 0.59 -1.3
262,934 + BACOVA_03173 0.76 -0.3
262,936 + BACOVA_03173 0.76 -0.3
262,936 + BACOVA_03173 0.76 -0.3
262,936 + BACOVA_03173 0.76 +0.2
262,937 - BACOVA_03173 0.76 -0.1
262,938 + BACOVA_03173 0.76 +0.0
262,938 + BACOVA_03173 0.76 +1.5
262,940 + BACOVA_03173 0.76 -0.1
262,942 + BACOVA_03173 0.77 +0.7
262,974 + BACOVA_03173 0.80 -0.9
263,043 + BACOVA_03173 0.88 -0.4
263,044 - BACOVA_03173 0.88 +0.6
263,115 + -0.5
263,125 - -1.0
263,162 - -0.1
263,265 - BACOVA_03175 0.21 -0.5
263,294 - BACOVA_03175 0.28 -0.9
263,348 + BACOVA_03175 0.40 -0.2
263,349 - BACOVA_03175 0.40 -0.2
263,349 - BACOVA_03175 0.40 -2.2
263,390 + BACOVA_03175 0.50 +0.1
263,393 + BACOVA_03175 0.50 +0.3
263,393 + BACOVA_03175 0.50 +0.2
263,474 + BACOVA_03175 0.69 -0.2
263,475 - BACOVA_03175 0.69 -0.0
263,475 - BACOVA_03175 0.69 -0.9
263,475 - BACOVA_03175 0.69 -1.8
263,506 - BACOVA_03175 0.76 -0.0
263,636 - BACOVA_03174 0.45 -0.8
263,768 - BACOVA_03176 0.13 +0.2
263,779 + BACOVA_03176 0.15 -0.1
263,796 - BACOVA_03176 0.18 -1.9
263,803 + BACOVA_03176 0.19 -0.6
263,804 - BACOVA_03176 0.19 -0.8
263,806 - BACOVA_03176 0.20 -1.3
263,837 + BACOVA_03176 0.25 +0.4
263,845 + BACOVA_03176 0.27 +1.0
263,846 - BACOVA_03176 0.27 -0.7
263,881 - BACOVA_03176 0.33 -0.3
263,925 + BACOVA_03176 0.41 -0.9
263,926 - BACOVA_03176 0.41 -1.8
263,967 + BACOVA_03176 0.49 -1.0
263,967 + BACOVA_03176 0.49 +0.3
263,967 + BACOVA_03176 0.49 +1.3
263,967 + BACOVA_03176 0.49 +0.5
263,968 - BACOVA_03176 0.49 -0.0
263,994 + BACOVA_03176 0.54 -0.3
264,030 + BACOVA_03176 0.60 +0.4
264,030 + BACOVA_03176 0.60 +1.0
264,031 - BACOVA_03176 0.60 +0.7
264,037 - BACOVA_03176 0.61 +0.1
264,064 + BACOVA_03176 0.66 -0.1
264,132 + BACOVA_03176 0.79 +0.2
264,133 - BACOVA_03176 0.79 -0.1
264,133 - BACOVA_03176 0.79 -0.4
264,135 + BACOVA_03176 0.79 +0.6
264,136 - BACOVA_03176 0.79 -0.0
264,136 - BACOVA_03176 0.79 -1.7
264,138 + BACOVA_03176 0.80 -0.0
264,138 + BACOVA_03176 0.80 -0.2
264,138 + BACOVA_03176 0.80 +0.0
264,138 + BACOVA_03176 0.80 +1.6
264,138 + BACOVA_03176 0.80 +0.1
264,138 + BACOVA_03176 0.80 +0.8
264,138 + BACOVA_03176 0.80 +0.5
264,139 - BACOVA_03176 0.80 -0.0
264,139 - BACOVA_03176 0.80 -1.0
264,285 + -0.3
264,286 - +1.0
264,297 + -0.1
264,297 + +0.2
264,298 - -0.8
264,299 + -1.2
264,299 + +0.1
264,299 + -0.0
264,299 + -0.6
264,300 - +0.4
264,362 + -0.7
264,443 + BACOVA_03177 0.17 -0.1
264,443 + BACOVA_03177 0.17 +0.0
264,444 - BACOVA_03177 0.17 +0.8
264,444 - BACOVA_03177 0.17 -1.5
264,444 - BACOVA_03177 0.17 -0.2
264,479 + BACOVA_03177 0.21 -1.0
264,511 + BACOVA_03177 0.24 -0.0
264,512 - BACOVA_03177 0.24 -1.2
264,543 + BACOVA_03177 0.27 -0.8
264,543 + BACOVA_03177 0.27 +0.2
264,545 + BACOVA_03177 0.27 -1.5
264,546 - BACOVA_03177 0.27 -1.3
264,546 - BACOVA_03177 0.27 +1.0
264,552 + BACOVA_03177 0.28 -0.2
264,552 + BACOVA_03177 0.28 -0.3
264,554 + BACOVA_03177 0.28 +0.5
264,554 + BACOVA_03177 0.28 -0.4
264,556 + BACOVA_03177 0.28 -0.7
264,556 + BACOVA_03177 0.28 -1.3
264,557 - BACOVA_03177 0.28 +0.4
264,557 - BACOVA_03177 0.28 +0.6
264,631 + BACOVA_03177 0.36 +0.2
264,631 + BACOVA_03177 0.36 -0.8
264,631 + BACOVA_03177 0.36 +0.2
264,650 - BACOVA_03177 0.38 -0.3
264,670 + BACOVA_03177 0.40 -0.6
264,704 - BACOVA_03177 0.43 -0.3
264,736 - BACOVA_03177 0.46 -1.1
264,804 - BACOVA_03177 0.53 +0.2
264,804 - BACOVA_03177 0.53 +0.6
264,807 - BACOVA_03177 0.53 +0.7
264,808 + BACOVA_03177 0.53 -1.2
264,808 + BACOVA_03177 0.53 -0.5
264,808 + BACOVA_03177 0.53 -1.1
264,809 - BACOVA_03177 0.53 -0.9
264,810 + BACOVA_03177 0.54 +0.1
264,812 + BACOVA_03177 0.54 +0.2
264,812 + BACOVA_03177 0.54 +0.7
264,813 - BACOVA_03177 0.54 -0.4
264,818 + BACOVA_03177 0.54 +1.0
264,819 - BACOVA_03177 0.54 -1.0
264,829 + BACOVA_03177 0.55 +1.0
264,851 + BACOVA_03177 0.58 +1.7
264,851 + BACOVA_03177 0.58 +0.8
264,851 + BACOVA_03177 0.58 -0.5
264,851 + BACOVA_03177 0.58 +1.0
264,851 + BACOVA_03177 0.58 -0.4
264,852 - BACOVA_03177 0.58 -1.9
264,852 - BACOVA_03177 0.58 +0.4
264,939 - BACOVA_03177 0.66 -0.8
264,992 + BACOVA_03177 0.72 -0.2
265,017 + BACOVA_03177 0.74 -0.6
265,159 + BACOVA_03177 0.88 -1.2
265,160 - BACOVA_03177 0.88 -0.8
265,176 - BACOVA_03177 0.90 -0.4
265,182 + +0.4
265,246 - -0.5
265,246 - +0.3
265,246 - +1.1

Or see this region's nucleotide sequence