Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02866

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02865 and BACOVA_02866 are separated by 19 nucleotidesBACOVA_02866 and BACOVA_02868 are separated by 369 nucleotidesBACOVA_02868 and BACOVA_02867 overlap by 14 nucleotidesBACOVA_02867 and BACOVA_02869 are separated by 24 nucleotidesBACOVA_02869 and BACOVA_02870 are separated by 11 nucleotides BACOVA_02865: BACOVA_02865 - hypothetical protein, at 356,866 to 358,914 _02865 BACOVA_02866: BACOVA_02866 - hypothetical protein, at 358,934 to 359,089 _02866 BACOVA_02868: BACOVA_02868 - hypothetical protein, at 359,459 to 359,605 _02868 BACOVA_02867: BACOVA_02867 - hypothetical protein, at 359,592 to 359,699 _02867 BACOVA_02869: BACOVA_02869 - transcriptional regulator, y4mF family, at 359,724 to 359,918 _02869 BACOVA_02870: BACOVA_02870 - HipA domain protein, at 359,930 to 360,253 _02870 Position (kb) 358 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 357.996 kb on + strand, within BACOVA_02865at 357.997 kb on - strand, within BACOVA_02865at 358.038 kb on + strand, within BACOVA_02865at 358.039 kb on - strand, within BACOVA_02865at 358.052 kb on - strand, within BACOVA_02865at 358.060 kb on - strand, within BACOVA_02865at 358.073 kb on - strand, within BACOVA_02865at 358.075 kb on - strand, within BACOVA_02865at 358.079 kb on + strand, within BACOVA_02865at 358.080 kb on - strand, within BACOVA_02865at 358.090 kb on + strand, within BACOVA_02865at 358.090 kb on + strand, within BACOVA_02865at 358.090 kb on + strand, within BACOVA_02865at 358.117 kb on - strand, within BACOVA_02865at 358.117 kb on - strand, within BACOVA_02865at 358.117 kb on - strand, within BACOVA_02865at 358.120 kb on + strand, within BACOVA_02865at 358.121 kb on - strand, within BACOVA_02865at 358.137 kb on + strand, within BACOVA_02865at 358.138 kb on - strand, within BACOVA_02865at 358.192 kb on + strand, within BACOVA_02865at 358.197 kb on + strand, within BACOVA_02865at 358.208 kb on - strand, within BACOVA_02865at 358.211 kb on + strand, within BACOVA_02865at 358.211 kb on + strand, within BACOVA_02865at 358.212 kb on - strand, within BACOVA_02865at 358.225 kb on - strand, within BACOVA_02865at 358.237 kb on + strand, within BACOVA_02865at 358.237 kb on + strand, within BACOVA_02865at 358.238 kb on - strand, within BACOVA_02865at 358.240 kb on - strand, within BACOVA_02865at 358.279 kb on + strand, within BACOVA_02865at 358.279 kb on + strand, within BACOVA_02865at 358.280 kb on - strand, within BACOVA_02865at 358.332 kb on + strand, within BACOVA_02865at 358.333 kb on - strand, within BACOVA_02865at 358.333 kb on - strand, within BACOVA_02865at 358.335 kb on + strand, within BACOVA_02865at 358.336 kb on - strand, within BACOVA_02865at 358.336 kb on - strand, within BACOVA_02865at 358.338 kb on - strand, within BACOVA_02865at 358.338 kb on - strand, within BACOVA_02865at 358.338 kb on - strand, within BACOVA_02865at 358.338 kb on - strand, within BACOVA_02865at 358.394 kb on - strand, within BACOVA_02865at 358.394 kb on - strand, within BACOVA_02865at 358.395 kb on + strand, within BACOVA_02865at 358.401 kb on + strand, within BACOVA_02865at 358.413 kb on + strand, within BACOVA_02865at 358.429 kb on + strand, within BACOVA_02865at 358.504 kb on + strand, within BACOVA_02865at 358.527 kb on + strand, within BACOVA_02865at 358.527 kb on + strand, within BACOVA_02865at 358.534 kb on - strand, within BACOVA_02865at 358.568 kb on + strand, within BACOVA_02865at 358.592 kb on + strand, within BACOVA_02865at 358.638 kb on + strand, within BACOVA_02865at 358.639 kb on - strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.649 kb on - strand, within BACOVA_02865at 358.664 kb on - strand, within BACOVA_02865at 358.689 kb on + strand, within BACOVA_02865at 358.725 kb on + strandat 358.726 kb on - strandat 358.786 kb on + strandat 358.812 kb on + strandat 358.825 kb on + strandat 358.890 kb on + strandat 358.890 kb on + strandat 358.891 kb on - strandat 358.891 kb on - strandat 358.966 kb on + strand, within BACOVA_02866at 359.037 kb on + strand, within BACOVA_02866at 359.038 kb on - strand, within BACOVA_02866at 359.105 kb on + strandat 359.115 kb on - strandat 359.123 kb on - strandat 359.134 kb on - strandat 359.146 kb on + strandat 359.156 kb on - strandat 359.166 kb on - strandat 359.227 kb on - strandat 359.228 kb on + strandat 359.261 kb on - strandat 359.261 kb on - strandat 359.284 kb on + strandat 359.285 kb on - strandat 359.292 kb on + strandat 359.325 kb on - strandat 359.325 kb on - strandat 359.405 kb on - strandat 359.411 kb on + strandat 359.506 kb on - strand, within BACOVA_02868at 359.510 kb on + strand, within BACOVA_02868at 359.560 kb on + strand, within BACOVA_02868at 359.560 kb on + strand, within BACOVA_02868at 359.561 kb on - strand, within BACOVA_02868at 359.563 kb on - strand, within BACOVA_02868at 359.563 kb on - strand, within BACOVA_02868at 359.570 kb on + strand, within BACOVA_02868at 359.571 kb on - strand, within BACOVA_02868at 359.589 kb on + strand, within BACOVA_02868at 359.589 kb on + strand, within BACOVA_02868at 359.590 kb on - strand, within BACOVA_02868at 359.591 kb on + strandat 359.611 kb on + strand, within BACOVA_02867at 359.711 kb on + strandat 359.713 kb on + strandat 359.714 kb on - strandat 359.853 kb on - strand, within BACOVA_02869at 359.876 kb on + strand, within BACOVA_02869at 359.903 kb on + strandat 359.904 kb on - strandat 359.904 kb on - strandat 359.929 kb on + strandat 359.967 kb on - strand, within BACOVA_02870at 360.015 kb on - strand, within BACOVA_02870at 360.032 kb on - strand, within BACOVA_02870at 360.087 kb on - strand, within BACOVA_02870at 360.089 kb on - strand, within BACOVA_02870

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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357,996 + BACOVA_02865 0.55 +1.0
357,997 - BACOVA_02865 0.55 -0.3
358,038 + BACOVA_02865 0.57 -0.4
358,039 - BACOVA_02865 0.57 -1.6
358,052 - BACOVA_02865 0.58 +0.1
358,060 - BACOVA_02865 0.58 +0.5
358,073 - BACOVA_02865 0.59 -1.3
358,075 - BACOVA_02865 0.59 +0.1
358,079 + BACOVA_02865 0.59 +1.2
358,080 - BACOVA_02865 0.59 +0.6
358,090 + BACOVA_02865 0.60 -0.1
358,090 + BACOVA_02865 0.60 +2.1
358,090 + BACOVA_02865 0.60 -0.0
358,117 - BACOVA_02865 0.61 -0.8
358,117 - BACOVA_02865 0.61 -0.3
358,117 - BACOVA_02865 0.61 +0.2
358,120 + BACOVA_02865 0.61 -0.6
358,121 - BACOVA_02865 0.61 +0.3
358,137 + BACOVA_02865 0.62 +1.0
358,138 - BACOVA_02865 0.62 -0.4
358,192 + BACOVA_02865 0.65 +0.5
358,197 + BACOVA_02865 0.65 -0.4
358,208 - BACOVA_02865 0.65 -1.3
358,211 + BACOVA_02865 0.66 -1.5
358,211 + BACOVA_02865 0.66 -0.4
358,212 - BACOVA_02865 0.66 -0.7
358,225 - BACOVA_02865 0.66 +0.3
358,237 + BACOVA_02865 0.67 +0.8
358,237 + BACOVA_02865 0.67 +0.2
358,238 - BACOVA_02865 0.67 +1.2
358,240 - BACOVA_02865 0.67 -0.0
358,279 + BACOVA_02865 0.69 -0.1
358,279 + BACOVA_02865 0.69 +1.5
358,280 - BACOVA_02865 0.69 -1.0
358,332 + BACOVA_02865 0.72 -1.1
358,333 - BACOVA_02865 0.72 -0.4
358,333 - BACOVA_02865 0.72 -2.8
358,335 + BACOVA_02865 0.72 +0.1
358,336 - BACOVA_02865 0.72 +1.0
358,336 - BACOVA_02865 0.72 -2.3
358,338 - BACOVA_02865 0.72 -0.0
358,338 - BACOVA_02865 0.72 +0.6
358,338 - BACOVA_02865 0.72 +0.3
358,338 - BACOVA_02865 0.72 -0.0
358,394 - BACOVA_02865 0.75 +0.2
358,394 - BACOVA_02865 0.75 -0.0
358,395 + BACOVA_02865 0.75 -0.7
358,401 + BACOVA_02865 0.75 -0.4
358,413 + BACOVA_02865 0.76 +0.1
358,429 + BACOVA_02865 0.76 -0.5
358,504 + BACOVA_02865 0.80 -0.1
358,527 + BACOVA_02865 0.81 +0.9
358,527 + BACOVA_02865 0.81 +0.1
358,534 - BACOVA_02865 0.81 +0.1
358,568 + BACOVA_02865 0.83 +0.2
358,592 + BACOVA_02865 0.84 +2.1
358,638 + BACOVA_02865 0.86 -0.1
358,639 - BACOVA_02865 0.87 -0.8
358,642 + BACOVA_02865 0.87 -0.1
358,642 + BACOVA_02865 0.87 +0.3
358,642 + BACOVA_02865 0.87 -0.0
358,649 - BACOVA_02865 0.87 -0.5
358,664 - BACOVA_02865 0.88 -0.1
358,689 + BACOVA_02865 0.89 +0.1
358,725 + -0.1
358,726 - -0.1
358,786 + +0.1
358,812 + +0.3
358,825 + -0.3
358,890 + -1.1
358,890 + +0.2
358,891 - -0.1
358,891 - +0.1
358,966 + BACOVA_02866 0.21 -0.1
359,037 + BACOVA_02866 0.66 +0.9
359,038 - BACOVA_02866 0.67 -0.3
359,105 + +0.0
359,115 - -0.3
359,123 - +0.6
359,134 - +2.1
359,146 + +0.5
359,156 - -0.7
359,166 - -0.1
359,227 - +1.0
359,228 + -0.8
359,261 - +0.6
359,261 - -1.1
359,284 + +0.6
359,285 - +0.4
359,292 + -0.1
359,325 - +0.5
359,325 - -1.5
359,405 - +2.2
359,411 + +0.2
359,506 - BACOVA_02868 0.32 -1.1
359,510 + BACOVA_02868 0.35 +0.9
359,560 + BACOVA_02868 0.69 +0.5
359,560 + BACOVA_02868 0.69 -0.5
359,561 - BACOVA_02868 0.69 +0.4
359,563 - BACOVA_02868 0.71 +0.3
359,563 - BACOVA_02868 0.71 -0.1
359,570 + BACOVA_02868 0.76 +0.8
359,571 - BACOVA_02868 0.76 +0.4
359,589 + BACOVA_02868 0.88 +0.3
359,589 + BACOVA_02868 0.88 -0.8
359,590 - BACOVA_02868 0.89 +1.0
359,591 + -1.8
359,611 + BACOVA_02867 0.18 +0.9
359,711 + +0.4
359,713 + -0.2
359,714 - -0.3
359,853 - BACOVA_02869 0.66 +1.2
359,876 + BACOVA_02869 0.78 +0.5
359,903 + +1.6
359,904 - +0.9
359,904 - +0.5
359,929 + -1.3
359,967 - BACOVA_02870 0.11 +1.2
360,015 - BACOVA_02870 0.26 +1.1
360,032 - BACOVA_02870 0.31 +0.3
360,087 - BACOVA_02870 0.48 +0.6
360,089 - BACOVA_02870 0.49 -0.1

Or see this region's nucleotide sequence