Experiment: marine_broth_2216 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02300 and BACOVA_02301 are separated by 28 nucleotides BACOVA_02301 and BACOVA_02302 are separated by 25 nucleotides BACOVA_02302 and BACOVA_02303 overlap by 4 nucleotides
BACOVA_02300: BACOVA_02300 - hypothetical protein, at 69,612 to 70,739
_02300
BACOVA_02301: BACOVA_02301 - conjugative transposon TraK protein, at 70,768 to 71,364
_02301
BACOVA_02302: BACOVA_02302 - hypothetical protein, at 71,390 to 71,881
_02302
BACOVA_02303: BACOVA_02303 - conjugative transposon TraM protein, at 71,878 to 73,059
_02303
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 69.778 kb on - strand, within BACOVA_02300 at 69.877 kb on + strand, within BACOVA_02300 at 70.092 kb on + strand, within BACOVA_02300 at 70.224 kb on + strand, within BACOVA_02300 at 70.225 kb on - strand, within BACOVA_02300 at 70.347 kb on + strand, within BACOVA_02300 at 70.381 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.396 kb on - strand, within BACOVA_02300 at 70.414 kb on + strand, within BACOVA_02300 at 70.416 kb on + strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.528 kb on - strand, within BACOVA_02300 at 70.539 kb on - strand, within BACOVA_02300 at 70.554 kb on + strand, within BACOVA_02300 at 70.742 kb on - strand at 70.775 kb on + strand at 70.776 kb on - strand at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 71.036 kb on - strand, within BACOVA_02301 at 71.037 kb on + strand, within BACOVA_02301 at 71.038 kb on - strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.135 kb on + strand, within BACOVA_02301 at 71.136 kb on - strand, within BACOVA_02301 at 71.210 kb on - strand, within BACOVA_02301 at 71.377 kb on + strand at 71.410 kb on - strand at 71.446 kb on - strand, within BACOVA_02302 at 71.612 kb on - strand, within BACOVA_02302 at 71.691 kb on + strand, within BACOVA_02302 at 71.692 kb on - strand, within BACOVA_02302 at 71.872 kb on + strand at 71.909 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 72.210 kb on + strand, within BACOVA_02303 at 72.281 kb on - strand, within BACOVA_02303
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media remove 69,778 - BACOVA_02300 0.15 +0.0 69,877 + BACOVA_02300 0.23 -0.4 70,092 + BACOVA_02300 0.43 -0.1 70,224 + BACOVA_02300 0.54 -0.7 70,225 - BACOVA_02300 0.54 -0.3 70,347 + BACOVA_02300 0.65 +0.4 70,381 - BACOVA_02300 0.68 +0.6 70,393 - BACOVA_02300 0.69 -0.3 70,393 - BACOVA_02300 0.69 -0.2 70,396 - BACOVA_02300 0.70 +0.5 70,414 + BACOVA_02300 0.71 -1.8 70,416 + BACOVA_02300 0.71 +1.2 70,417 - BACOVA_02300 0.71 -0.4 70,417 - BACOVA_02300 0.71 -2.1 70,417 - BACOVA_02300 0.71 -0.6 70,528 - BACOVA_02300 0.81 +0.0 70,539 - BACOVA_02300 0.82 -0.9 70,554 + BACOVA_02300 0.84 +0.0 70,742 - -0.6 70,775 + -1.4 70,776 - -0.6 70,906 + BACOVA_02301 0.23 -0.6 70,906 + BACOVA_02301 0.23 -2.0 70,906 + BACOVA_02301 0.23 -1.4 71,036 - BACOVA_02301 0.45 -0.7 71,037 + BACOVA_02301 0.45 -1.4 71,038 - BACOVA_02301 0.45 -0.3 71,065 + BACOVA_02301 0.50 -2.2 71,065 + BACOVA_02301 0.50 +0.3 71,135 + BACOVA_02301 0.61 -1.2 71,136 - BACOVA_02301 0.62 -0.8 71,210 - BACOVA_02301 0.74 +1.0 71,377 + +1.0 71,410 - -2.0 71,446 - BACOVA_02302 0.11 -0.3 71,612 - BACOVA_02302 0.45 -0.9 71,691 + BACOVA_02302 0.61 +0.2 71,692 - BACOVA_02302 0.61 -1.2 71,872 + -1.0 71,909 - -1.0 71,954 - +0.8 71,954 - +0.2 71,954 - -1.4 72,210 + BACOVA_02303 0.28 -0.0 72,281 - BACOVA_02303 0.34 -0.7
Or see this region's nucleotide sequence