Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01537

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01533 and BACOVA_01534 are separated by 20 nucleotidesBACOVA_01534 and BACOVA_01536 are separated by 142 nucleotidesBACOVA_01536 and BACOVA_01537 overlap by 4 nucleotidesBACOVA_01537 and BACOVA_01538 are separated by 302 nucleotides BACOVA_01535: BACOVA_01535 - hypothetical protein, at 33,873 to 34,136 _01535 BACOVA_01533: BACOVA_01533 - hypothetical protein, at 33,944 to 34,114 _01533 BACOVA_01534: BACOVA_01534 - hypothetical protein, at 34,135 to 34,281 _01534 BACOVA_01536: BACOVA_01536 - hypothetical protein, at 34,424 to 34,954 _01536 BACOVA_01537: BACOVA_01537 - hypothetical protein, at 34,951 to 35,820 _01537 BACOVA_01538: BACOVA_01538 - MIP family channel protein, at 36,123 to 36,782 _01538 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.960 kb on + strandat 33.998 kb on + strandat 34.011 kb on + strandat 34.024 kb on + strandat 34.119 kb on + strandat 34.119 kb on + strandat 34.205 kb on + strand, within BACOVA_01534at 34.285 kb on - strandat 34.306 kb on + strandat 34.307 kb on - strandat 34.400 kb on - strandat 34.421 kb on - strandat 34.455 kb on - strandat 34.510 kb on - strand, within BACOVA_01536at 34.512 kb on - strand, within BACOVA_01536at 34.579 kb on - strand, within BACOVA_01536at 34.766 kb on - strand, within BACOVA_01536at 34.766 kb on - strand, within BACOVA_01536at 34.768 kb on - strand, within BACOVA_01536at 34.854 kb on - strand, within BACOVA_01536at 34.915 kb on - strandat 35.027 kb on - strandat 35.068 kb on + strand, within BACOVA_01537at 35.068 kb on + strand, within BACOVA_01537at 35.069 kb on - strand, within BACOVA_01537at 35.073 kb on + strand, within BACOVA_01537at 35.104 kb on + strand, within BACOVA_01537at 35.128 kb on + strand, within BACOVA_01537at 35.128 kb on + strand, within BACOVA_01537at 35.129 kb on - strand, within BACOVA_01537at 35.134 kb on + strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.167 kb on - strand, within BACOVA_01537at 35.188 kb on - strand, within BACOVA_01537at 35.241 kb on - strand, within BACOVA_01537at 35.241 kb on - strand, within BACOVA_01537at 35.314 kb on + strand, within BACOVA_01537at 35.330 kb on + strand, within BACOVA_01537at 35.331 kb on - strand, within BACOVA_01537at 35.421 kb on - strand, within BACOVA_01537at 35.438 kb on + strand, within BACOVA_01537at 35.514 kb on - strand, within BACOVA_01537at 35.519 kb on + strand, within BACOVA_01537at 35.519 kb on + strand, within BACOVA_01537at 35.520 kb on - strand, within BACOVA_01537at 35.520 kb on - strand, within BACOVA_01537at 35.548 kb on + strand, within BACOVA_01537at 35.549 kb on - strand, within BACOVA_01537at 35.549 kb on - strand, within BACOVA_01537at 35.551 kb on + strand, within BACOVA_01537at 35.552 kb on - strand, within BACOVA_01537at 35.560 kb on + strand, within BACOVA_01537at 35.560 kb on + strand, within BACOVA_01537at 35.561 kb on - strand, within BACOVA_01537at 35.592 kb on + strand, within BACOVA_01537at 35.637 kb on + strand, within BACOVA_01537at 35.638 kb on - strand, within BACOVA_01537at 35.644 kb on + strand, within BACOVA_01537at 35.646 kb on + strand, within BACOVA_01537at 35.647 kb on - strand, within BACOVA_01537at 35.647 kb on - strand, within BACOVA_01537at 35.655 kb on + strand, within BACOVA_01537at 35.656 kb on - strand, within BACOVA_01537at 35.656 kb on - strand, within BACOVA_01537at 35.703 kb on - strand, within BACOVA_01537at 35.734 kb on - strandat 35.743 kb on - strandat 35.786 kb on + strandat 35.786 kb on + strandat 35.806 kb on + strandat 35.806 kb on + strandat 35.806 kb on + strandat 35.818 kb on + strandat 35.818 kb on + strandat 35.835 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.908 kb on + strandat 35.908 kb on + strandat 35.913 kb on + strandat 35.960 kb on - strandat 35.962 kb on + strandat 36.036 kb on - strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.058 kb on + strandat 36.059 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.067 kb on + strandat 36.067 kb on + strandat 36.082 kb on + strandat 36.082 kb on + strandat 36.136 kb on - strandat 36.160 kb on - strandat 36.209 kb on + strand, within BACOVA_01538at 36.209 kb on + strand, within BACOVA_01538at 36.210 kb on - strand, within BACOVA_01538at 36.282 kb on - strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.286 kb on - strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.344 kb on + strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.393 kb on - strand, within BACOVA_01538at 36.507 kb on + strand, within BACOVA_01538at 36.528 kb on + strand, within BACOVA_01538at 36.533 kb on + strand, within BACOVA_01538at 36.535 kb on + strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.632 kb on - strand, within BACOVA_01538at 36.798 kb on - strandat 36.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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33,960 + -0.2
33,998 + +0.1
34,011 + -0.4
34,024 + +0.0
34,119 + -1.2
34,119 + +0.5
34,205 + BACOVA_01534 0.48 -1.9
34,285 - -0.7
34,306 + -1.7
34,307 - +0.3
34,400 - +0.5
34,421 - -0.9
34,455 - -0.1
34,510 - BACOVA_01536 0.16 -0.4
34,512 - BACOVA_01536 0.17 -0.1
34,579 - BACOVA_01536 0.29 +0.4
34,766 - BACOVA_01536 0.64 -0.5
34,766 - BACOVA_01536 0.64 -1.0
34,768 - BACOVA_01536 0.65 +0.6
34,854 - BACOVA_01536 0.81 -0.2
34,915 - +1.3
35,027 - +1.1
35,068 + BACOVA_01537 0.13 -0.4
35,068 + BACOVA_01537 0.13 +0.6
35,069 - BACOVA_01537 0.14 -0.6
35,073 + BACOVA_01537 0.14 +1.2
35,104 + BACOVA_01537 0.18 +0.7
35,128 + BACOVA_01537 0.20 +0.5
35,128 + BACOVA_01537 0.20 +0.3
35,129 - BACOVA_01537 0.20 -0.4
35,134 + BACOVA_01537 0.21 -0.0
35,135 - BACOVA_01537 0.21 -0.4
35,135 - BACOVA_01537 0.21 -0.2
35,135 - BACOVA_01537 0.21 +0.2
35,167 - BACOVA_01537 0.25 +0.7
35,188 - BACOVA_01537 0.27 +1.0
35,241 - BACOVA_01537 0.33 -1.6
35,241 - BACOVA_01537 0.33 -0.8
35,314 + BACOVA_01537 0.42 +0.7
35,330 + BACOVA_01537 0.44 -0.8
35,331 - BACOVA_01537 0.44 -0.6
35,421 - BACOVA_01537 0.54 -3.0
35,438 + BACOVA_01537 0.56 +0.6
35,514 - BACOVA_01537 0.65 +0.2
35,519 + BACOVA_01537 0.65 -1.2
35,519 + BACOVA_01537 0.65 -0.2
35,520 - BACOVA_01537 0.65 +0.1
35,520 - BACOVA_01537 0.65 +0.5
35,548 + BACOVA_01537 0.69 +0.0
35,549 - BACOVA_01537 0.69 -0.3
35,549 - BACOVA_01537 0.69 -0.7
35,551 + BACOVA_01537 0.69 +0.3
35,552 - BACOVA_01537 0.69 -1.7
35,560 + BACOVA_01537 0.70 +0.0
35,560 + BACOVA_01537 0.70 +0.2
35,561 - BACOVA_01537 0.70 -0.9
35,592 + BACOVA_01537 0.74 +0.7
35,637 + BACOVA_01537 0.79 +2.6
35,638 - BACOVA_01537 0.79 +0.7
35,644 + BACOVA_01537 0.80 +0.5
35,646 + BACOVA_01537 0.80 +1.6
35,647 - BACOVA_01537 0.80 -0.8
35,647 - BACOVA_01537 0.80 -1.3
35,655 + BACOVA_01537 0.81 +0.1
35,656 - BACOVA_01537 0.81 +0.4
35,656 - BACOVA_01537 0.81 +0.5
35,703 - BACOVA_01537 0.86 -1.5
35,734 - +0.9
35,743 - -0.1
35,786 + +0.8
35,786 + +0.4
35,806 + -0.7
35,806 + -0.6
35,806 + +0.4
35,818 + +0.2
35,818 + -1.4
35,835 - +0.4
35,838 - -1.2
35,838 - +0.8
35,838 - +0.2
35,838 - -0.1
35,908 + -0.5
35,908 + +0.6
35,913 + -1.2
35,960 - +0.2
35,962 + -0.1
36,036 - +1.3
36,037 + +0.4
36,037 + -0.8
36,037 + +1.6
36,037 + -1.6
36,037 + +0.1
36,038 - +0.8
36,038 - +0.7
36,038 - +1.3
36,058 + +0.7
36,059 - +1.5
36,065 - +0.4
36,065 - +0.6
36,065 - +1.4
36,067 + +0.0
36,067 + +0.4
36,082 + +0.0
36,082 + -0.3
36,136 - +0.0
36,160 - +1.9
36,209 + BACOVA_01538 0.13 +0.4
36,209 + BACOVA_01538 0.13 -0.0
36,210 - BACOVA_01538 0.13 +0.6
36,282 - BACOVA_01538 0.24 +0.0
36,285 + BACOVA_01538 0.25 +0.3
36,285 + BACOVA_01538 0.25 +0.2
36,285 + BACOVA_01538 0.25 +0.5
36,286 - BACOVA_01538 0.25 +0.1
36,290 + BACOVA_01538 0.25 +0.2
36,290 + BACOVA_01538 0.25 +0.9
36,290 + BACOVA_01538 0.25 +1.4
36,291 - BACOVA_01538 0.25 +0.6
36,291 - BACOVA_01538 0.25 +1.1
36,291 - BACOVA_01538 0.25 +1.1
36,291 - BACOVA_01538 0.25 -0.1
36,291 - BACOVA_01538 0.25 +1.4
36,291 - BACOVA_01538 0.25 +0.8
36,344 + BACOVA_01538 0.33 -1.0
36,345 - BACOVA_01538 0.34 +1.4
36,345 - BACOVA_01538 0.34 +0.3
36,370 - BACOVA_01538 0.37 +0.8
36,370 - BACOVA_01538 0.37 -1.6
36,392 + BACOVA_01538 0.41 -1.2
36,392 + BACOVA_01538 0.41 -0.2
36,392 + BACOVA_01538 0.41 +0.5
36,393 - BACOVA_01538 0.41 +0.4
36,507 + BACOVA_01538 0.58 -0.7
36,528 + BACOVA_01538 0.61 -0.1
36,533 + BACOVA_01538 0.62 +0.4
36,535 + BACOVA_01538 0.62 +0.5
36,536 - BACOVA_01538 0.63 +0.9
36,536 - BACOVA_01538 0.63 +0.8
36,632 - BACOVA_01538 0.77 +0.3
36,798 - +0.7
36,805 + -2.5

Or see this region's nucleotide sequence