Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891)

Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04168

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	vio MOI10
				remove
4,381,082	-	OHPLBJKB_04166	0.46	+0.5
4,381,090	+	OHPLBJKB_04166	0.46	+0.7
4,381,168	+	OHPLBJKB_04166	0.55	+0.0
4,381,168	+	OHPLBJKB_04166	0.55	-0.6
4,381,168	+	OHPLBJKB_04166	0.55	+0.1
4,381,169	-	OHPLBJKB_04166	0.55	-1.5
4,381,273	+	OHPLBJKB_04166	0.66	+1.0
4,381,405	+	OHPLBJKB_04166	0.80	+0.2
4,381,408	+	OHPLBJKB_04166	0.80	-0.7
4,381,408	+	OHPLBJKB_04166	0.80	-0.2
4,381,408	+	OHPLBJKB_04166	0.80	+1.0
4,381,408	+	OHPLBJKB_04166	0.80	-0.5
4,381,409	-	OHPLBJKB_04166	0.80	-0.2
4,381,409	-	OHPLBJKB_04166	0.80	-1.6
4,381,409	-	OHPLBJKB_04166	0.80	+0.7
4,381,409	-	OHPLBJKB_04166	0.80	+0.1
4,381,410	+	OHPLBJKB_04166	0.80	-0.4
4,381,410	+	OHPLBJKB_04166	0.80	+0.0
4,381,410	+	OHPLBJKB_04166	0.80	-0.0
4,381,410	+	OHPLBJKB_04166	0.80	+0.8
4,381,410	+	OHPLBJKB_04166	0.80	-1.2
4,381,410	+	OHPLBJKB_04166	0.80	-1.0
4,381,410	+	OHPLBJKB_04166	0.80	-0.8
4,381,410	+	OHPLBJKB_04166	0.80	-0.2
4,381,410	+	OHPLBJKB_04166	0.80	-0.9
4,381,410	+	OHPLBJKB_04166	0.80	-0.3
4,381,410	+	OHPLBJKB_04166	0.80	+0.1
4,381,411	-	OHPLBJKB_04166	0.80	-0.0
4,381,411	-	OHPLBJKB_04166	0.80	-1.7
4,381,411	-	OHPLBJKB_04166	0.80	-0.3
4,381,411	-	OHPLBJKB_04166	0.80	-0.2
4,381,411	-	OHPLBJKB_04166	0.80	+0.3
4,381,519	+			-0.4
4,381,520	-			+0.1
4,381,545	+			+0.5
4,381,549	-			+0.5
4,381,549	-			-0.8
4,381,590	+			+0.4
4,381,590	+			-1.2
4,381,590	+			-0.6
4,381,590	+			-0.5
4,381,590	+			-1.6
4,381,591	-			-0.2
4,381,591	-			-0.5
4,381,591	-			-1.0
4,381,595	-			+1.3
4,381,642	+			-0.1
4,381,643	-			-0.3
4,381,643	-			+0.2
4,381,684	+	OHPLBJKB_04167	0.10	+0.3
4,381,754	+	OHPLBJKB_04167	0.26	-0.0
4,381,754	+	OHPLBJKB_04167	0.26	-0.2
4,381,755	-	OHPLBJKB_04167	0.26	-0.7
4,381,755	-	OHPLBJKB_04167	0.26	-1.1
4,381,755	-	OHPLBJKB_04167	0.26	+0.1
4,381,760	+	OHPLBJKB_04167	0.28	-0.6
4,381,760	+	OHPLBJKB_04167	0.28	-0.3
4,381,760	+	OHPLBJKB_04167	0.28	+0.7
4,381,760	+	OHPLBJKB_04167	0.28	-0.9
4,381,760	+	OHPLBJKB_04167	0.28	+1.0
4,381,760	+	OHPLBJKB_04167	0.28	+0.3
4,381,760	+	OHPLBJKB_04167	0.28	+1.3
4,381,760	+	OHPLBJKB_04167	0.28	+0.7
4,381,760	+	OHPLBJKB_04167	0.28	-0.4
4,381,760	+	OHPLBJKB_04167	0.28	+1.2
4,381,760	+	OHPLBJKB_04167	0.28	+0.4
4,381,760	+	OHPLBJKB_04167	0.28	-0.4
4,381,760	+	OHPLBJKB_04167	0.28	+0.9
4,381,760	+	OHPLBJKB_04167	0.28	-1.6
4,381,761	-	OHPLBJKB_04167	0.28	+1.9
4,381,761	-	OHPLBJKB_04167	0.28	+0.5
4,381,761	-	OHPLBJKB_04167	0.28	+0.9
4,381,761	-	OHPLBJKB_04167	0.28	-1.5
4,381,761	-	OHPLBJKB_04167	0.28	-0.2
4,381,761	-	OHPLBJKB_04167	0.28	-0.4
4,381,762	+	OHPLBJKB_04167	0.28	+0.4
4,381,762	+	OHPLBJKB_04167	0.28	+0.2
4,381,763	-	OHPLBJKB_04167	0.28	-0.5
4,381,763	-	OHPLBJKB_04167	0.28	+1.4
4,381,987	+	OHPLBJKB_04167	0.79	+0.5
4,381,988	-	OHPLBJKB_04167	0.80	-0.7
4,382,066	-			-0.6
4,382,112	+			-0.6
4,382,141	+			-1.0
4,382,142	-			+1.3
4,382,165	+	OHPLBJKB_04168	0.11	-0.4
4,382,166	-	OHPLBJKB_04168	0.11	+0.6
4,382,179	+	OHPLBJKB_04168	0.12	-0.2
4,382,255	-	OHPLBJKB_04168	0.21	+0.3
4,382,332	-	OHPLBJKB_04168	0.30	+0.2
4,382,342	+	OHPLBJKB_04168	0.31	-0.6
4,382,343	-	OHPLBJKB_04168	0.31	-0.0
4,382,356	+	OHPLBJKB_04168	0.32	+0.2
4,382,356	+	OHPLBJKB_04168	0.32	-0.8
4,382,357	-	OHPLBJKB_04168	0.33	-0.3
4,382,459	-	OHPLBJKB_04168	0.44	-0.2
4,382,478	-	OHPLBJKB_04168	0.46	+0.5
4,382,505	+	OHPLBJKB_04168	0.49	+0.7
4,382,506	-	OHPLBJKB_04168	0.50	+0.7
4,382,519	-	OHPLBJKB_04168	0.51	+0.4
4,382,555	+	OHPLBJKB_04168	0.55	+0.9
4,382,556	-	OHPLBJKB_04168	0.55	-1.3
4,382,593	+	OHPLBJKB_04168	0.60	-0.1
4,382,593	+	OHPLBJKB_04168	0.60	-0.3
4,382,593	+	OHPLBJKB_04168	0.60	+0.9
4,382,594	-	OHPLBJKB_04168	0.60	-1.0
4,382,677	+	OHPLBJKB_04168	0.69	+0.2
4,382,678	-	OHPLBJKB_04168	0.69	+0.1
4,382,688	-	OHPLBJKB_04168	0.70	-1.3
4,382,700	-	OHPLBJKB_04168	0.72	+1.1
4,382,806	-	OHPLBJKB_04168	0.84	+0.3
4,382,824	+	OHPLBJKB_04168	0.86	+0.2
4,382,825	-	OHPLBJKB_04168	0.86	+0.9
4,382,835	-	OHPLBJKB_04168	0.87	+0.2
4,382,867	+			-0.3
4,382,868	-			+0.7
4,382,868	-			+0.5
4,382,880	+			-0.5
4,382,940	+			+0.4
4,382,940	+			+0.3
4,382,946	-			+0.8
4,382,961	+			+0.2
4,382,962	-			-0.2
4,382,962	-			-0.6
4,382,996	-			-1.1
4,383,001	+	OHPLBJKB_04169	0.10	+0.2
4,383,001	+	OHPLBJKB_04169	0.10	+0.8
4,383,002	-	OHPLBJKB_04169	0.10	-0.6
4,383,002	-	OHPLBJKB_04169	0.10	-0.4
4,383,009	-	OHPLBJKB_04169	0.12	-0.1
4,383,026	+	OHPLBJKB_04169	0.14	-0.7
4,383,026	+	OHPLBJKB_04169	0.14	+0.3
4,383,026	+	OHPLBJKB_04169	0.14	+0.1
4,383,026	+	OHPLBJKB_04169	0.14	-0.4
4,383,026	+	OHPLBJKB_04169	0.14	+0.4
4,383,026	+	OHPLBJKB_04169	0.14	-0.1
4,383,026	+	OHPLBJKB_04169	0.14	-0.5
4,383,026	+	OHPLBJKB_04169	0.14	-1.5
4,383,026	+	OHPLBJKB_04169	0.14	+0.1
4,383,026	+	OHPLBJKB_04169	0.14	+0.4
4,383,026	+	OHPLBJKB_04169	0.14	-0.3
4,383,026	+	OHPLBJKB_04169	0.14	-0.8
4,383,026	+	OHPLBJKB_04169	0.14	-0.5
4,383,027	-	OHPLBJKB_04169	0.15	+0.4
4,383,027	-	OHPLBJKB_04169	0.15	+0.7
4,383,027	-	OHPLBJKB_04169	0.15	-0.0
4,383,027	-	OHPLBJKB_04169	0.15	-1.0
4,383,027	-	OHPLBJKB_04169	0.15	+0.0
4,383,027	-	OHPLBJKB_04169	0.15	+0.8
4,383,027	-	OHPLBJKB_04169	0.15	+1.9
4,383,027	-	OHPLBJKB_04169	0.15	+0.7
4,383,028	+	OHPLBJKB_04169	0.15	-0.5
4,383,028	+	OHPLBJKB_04169	0.15	-0.7
4,383,028	+	OHPLBJKB_04169	0.15	+0.8
4,383,029	-	OHPLBJKB_04169	0.15	+0.2
4,383,144	+	OHPLBJKB_04169	0.34	+0.1
4,383,144	+	OHPLBJKB_04169	0.34	+0.2
4,383,144	+	OHPLBJKB_04169	0.34	-0.8
4,383,144	+	OHPLBJKB_04169	0.34	+3.4
4,383,145	-	OHPLBJKB_04169	0.34	+0.6
4,383,145	-	OHPLBJKB_04169	0.34	-1.0
4,383,145	-	OHPLBJKB_04169	0.34	+0.2
4,383,145	-	OHPLBJKB_04169	0.34	+0.1
4,383,148	+	OHPLBJKB_04169	0.35	-0.2
4,383,148	+	OHPLBJKB_04169	0.35	-0.3
4,383,148	+	OHPLBJKB_04169	0.35	-0.0
4,383,148	+	OHPLBJKB_04169	0.35	-0.4
4,383,148	+	OHPLBJKB_04169	0.35	+0.2
4,383,148	+	OHPLBJKB_04169	0.35	+1.2
4,383,148	+	OHPLBJKB_04169	0.35	+0.7
4,383,149	-	OHPLBJKB_04169	0.35	+0.8
4,383,149	-	OHPLBJKB_04169	0.35	-0.9
4,383,149	-	OHPLBJKB_04169	0.35	+1.0
4,383,149	-	OHPLBJKB_04169	0.35	+1.3
4,383,149	-	OHPLBJKB_04169	0.35	+0.1
4,383,149	-	OHPLBJKB_04169	0.35	+2.7
4,383,256	+	OHPLBJKB_04169	0.53	-0.2
4,383,257	-	OHPLBJKB_04169	0.53	-0.3
4,383,327	+	OHPLBJKB_04169	0.65	+0.5
4,383,328	-	OHPLBJKB_04169	0.65	-1.1
4,383,328	-	OHPLBJKB_04169	0.65	-0.5
4,383,339	-	OHPLBJKB_04169	0.67	+0.9
4,383,437	-	OHPLBJKB_04169	0.83	-0.1
4,383,514	+			-0.6
4,383,518	+			+0.4
4,383,529	+			+0.6
4,383,530	-			+0.2
4,383,530	-			-0.7
4,383,530	-			+0.7
4,383,532	-			-0.7
4,383,645	+			+0.4
4,383,668	+			-0.4
4,383,693	+			+1.0
4,383,758	-			-0.8
4,383,766	-			+0.4
4,383,766	-			-0.6
4,383,789	+	OHPLBJKB_04170	0.12	+0.0
4,383,789	+	OHPLBJKB_04170	0.12	-0.1
4,383,789	+	OHPLBJKB_04170	0.12	-0.2
4,383,790	-	OHPLBJKB_04170	0.12	+0.4
4,383,811	-	OHPLBJKB_04170	0.15	-0.2
4,383,817	+	OHPLBJKB_04170	0.16	-1.6
4,383,817	+	OHPLBJKB_04170	0.16	+0.0
4,383,874	+	OHPLBJKB_04170	0.22	+0.1
4,383,875	-	OHPLBJKB_04170	0.22	-0.7
4,383,880	-	OHPLBJKB_04170	0.23	+1.1
4,383,896	+	OHPLBJKB_04170	0.24	-0.0
4,383,940	-	OHPLBJKB_04170	0.29	+0.3
4,383,940	-	OHPLBJKB_04170	0.29	+0.2

Or see this region's nucleotide sequence