Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03565 and OHPLBJKB_03566 overlap by 4 nucleotides OHPLBJKB_03566 and OHPLBJKB_03567 are separated by 1 nucleotides OHPLBJKB_03567 and OHPLBJKB_03568 overlap by 8 nucleotides
OHPLBJKB_03565: OHPLBJKB_03565 - Cell division protein FtsA, at 3,735,463 to 3,736,725
_03565
OHPLBJKB_03566: OHPLBJKB_03566 - Cell division protein FtsQ, at 3,736,722 to 3,737,552
_03566
OHPLBJKB_03567: OHPLBJKB_03567 - D-alanine--D-alanine ligase B, at 3,737,554 to 3,738,474
_03567
OHPLBJKB_03568: OHPLBJKB_03568 - UDP-N-acetylmuramate--L-alanine ligase, at 3,738,467 to 3,739,942
_03568
Position (kb) 3737
3738
3739 Strain fitness (log2 ratio) -1
0
1
2 at 3737.602 kb on - strand at 3737.676 kb on - strand, within OHPLBJKB_03567 at 3737.710 kb on - strand, within OHPLBJKB_03567 at 3737.732 kb on - strand, within OHPLBJKB_03567 at 3737.732 kb on - strand, within OHPLBJKB_03567 at 3737.732 kb on - strand, within OHPLBJKB_03567 at 3737.841 kb on - strand, within OHPLBJKB_03567 at 3737.847 kb on - strand, within OHPLBJKB_03567 at 3737.873 kb on - strand, within OHPLBJKB_03567 at 3738.005 kb on - strand, within OHPLBJKB_03567 at 3738.182 kb on - strand, within OHPLBJKB_03567 at 3738.182 kb on - strand, within OHPLBJKB_03567 at 3738.228 kb on - strand, within OHPLBJKB_03567
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 3,737,602 - +0.4 3,737,676 - OHPLBJKB_03567 0.13 +0.0 3,737,710 - OHPLBJKB_03567 0.17 -0.0 3,737,732 - OHPLBJKB_03567 0.19 -0.6 3,737,732 - OHPLBJKB_03567 0.19 -0.5 3,737,732 - OHPLBJKB_03567 0.19 +0.1 3,737,841 - OHPLBJKB_03567 0.31 +0.6 3,737,847 - OHPLBJKB_03567 0.32 +1.8 3,737,873 - OHPLBJKB_03567 0.35 -0.1 3,738,005 - OHPLBJKB_03567 0.49 -0.2 3,738,182 - OHPLBJKB_03567 0.68 +0.5 3,738,182 - OHPLBJKB_03567 0.68 -0.2 3,738,228 - OHPLBJKB_03567 0.73 +1.2
Or see this region's nucleotide sequence