Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02841

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02838 and OHPLBJKB_02839 are separated by 1 nucleotidesOHPLBJKB_02839 and OHPLBJKB_02840 overlap by 20 nucleotidesOHPLBJKB_02840 and OHPLBJKB_02841 are separated by 3 nucleotidesOHPLBJKB_02841 and OHPLBJKB_02842 overlap by 1 nucleotidesOHPLBJKB_02842 and OHPLBJKB_02843 are separated by 95 nucleotides OHPLBJKB_02838: OHPLBJKB_02838 - hypothetical protein, at 2,967,742 to 2,968,119 _02838 OHPLBJKB_02839: OHPLBJKB_02839 - hypothetical protein, at 2,968,121 to 2,968,633 _02839 OHPLBJKB_02840: OHPLBJKB_02840 - hypothetical protein, at 2,968,614 to 2,968,829 _02840 OHPLBJKB_02841: OHPLBJKB_02841 - hypothetical protein, at 2,968,833 to 2,969,036 _02841 OHPLBJKB_02842: OHPLBJKB_02842 - hypothetical protein, at 2,969,036 to 2,969,500 _02842 OHPLBJKB_02843: OHPLBJKB_02843 - hypothetical protein, at 2,969,596 to 2,970,246 _02843 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -2 -1 0 1 2at 2967.848 kb on - strand, within OHPLBJKB_02838at 2967.848 kb on - strand, within OHPLBJKB_02838at 2967.848 kb on - strand, within OHPLBJKB_02838at 2967.848 kb on - strand, within OHPLBJKB_02838at 2967.879 kb on + strand, within OHPLBJKB_02838at 2967.880 kb on - strand, within OHPLBJKB_02838at 2967.883 kb on + strand, within OHPLBJKB_02838at 2967.884 kb on - strand, within OHPLBJKB_02838at 2967.901 kb on - strand, within OHPLBJKB_02838at 2967.925 kb on + strand, within OHPLBJKB_02838at 2967.926 kb on - strand, within OHPLBJKB_02838at 2967.926 kb on - strand, within OHPLBJKB_02838at 2967.951 kb on + strand, within OHPLBJKB_02838at 2967.952 kb on - strand, within OHPLBJKB_02838at 2967.956 kb on - strand, within OHPLBJKB_02838at 2968.050 kb on - strand, within OHPLBJKB_02838at 2968.105 kb on + strandat 2968.106 kb on - strandat 2968.324 kb on - strand, within OHPLBJKB_02839at 2968.450 kb on + strand, within OHPLBJKB_02839at 2968.450 kb on + strand, within OHPLBJKB_02839at 2968.451 kb on - strand, within OHPLBJKB_02839at 2968.453 kb on + strand, within OHPLBJKB_02839at 2968.454 kb on - strand, within OHPLBJKB_02839at 2968.672 kb on + strand, within OHPLBJKB_02840at 2968.673 kb on - strand, within OHPLBJKB_02840at 2968.673 kb on - strand, within OHPLBJKB_02840at 2968.687 kb on + strand, within OHPLBJKB_02840at 2968.687 kb on + strand, within OHPLBJKB_02840at 2968.688 kb on - strand, within OHPLBJKB_02840at 2968.795 kb on + strand, within OHPLBJKB_02840at 2968.795 kb on + strand, within OHPLBJKB_02840at 2968.796 kb on - strand, within OHPLBJKB_02840at 2968.981 kb on + strand, within OHPLBJKB_02841at 2969.014 kb on + strand, within OHPLBJKB_02841at 2969.014 kb on + strand, within OHPLBJKB_02841at 2969.015 kb on - strand, within OHPLBJKB_02841at 2969.041 kb on + strandat 2969.041 kb on + strandat 2969.166 kb on + strand, within OHPLBJKB_02842at 2969.209 kb on - strand, within OHPLBJKB_02842at 2969.209 kb on - strand, within OHPLBJKB_02842at 2969.224 kb on - strand, within OHPLBJKB_02842at 2969.286 kb on + strand, within OHPLBJKB_02842at 2969.287 kb on - strand, within OHPLBJKB_02842at 2969.287 kb on - strand, within OHPLBJKB_02842at 2969.319 kb on + strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.672 kb on - strand, within OHPLBJKB_02843at 2969.692 kb on - strand, within OHPLBJKB_02843at 2969.958 kb on - strand, within OHPLBJKB_02843at 2969.990 kb on + strand, within OHPLBJKB_02843at 2969.990 kb on + strand, within OHPLBJKB_02843at 2969.991 kb on - strand, within OHPLBJKB_02843at 2969.991 kb on - strand, within OHPLBJKB_02843

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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2,967,848 - OHPLBJKB_02838 0.28 -0.0
2,967,848 - OHPLBJKB_02838 0.28 +0.1
2,967,848 - OHPLBJKB_02838 0.28 +0.6
2,967,848 - OHPLBJKB_02838 0.28 +1.1
2,967,879 + OHPLBJKB_02838 0.36 -1.4
2,967,880 - OHPLBJKB_02838 0.37 +0.2
2,967,883 + OHPLBJKB_02838 0.37 -0.5
2,967,884 - OHPLBJKB_02838 0.38 -1.0
2,967,901 - OHPLBJKB_02838 0.42 -1.2
2,967,925 + OHPLBJKB_02838 0.48 +0.6
2,967,926 - OHPLBJKB_02838 0.49 -0.2
2,967,926 - OHPLBJKB_02838 0.49 +0.8
2,967,951 + OHPLBJKB_02838 0.55 -0.7
2,967,952 - OHPLBJKB_02838 0.56 -0.6
2,967,956 - OHPLBJKB_02838 0.57 +0.2
2,968,050 - OHPLBJKB_02838 0.81 -1.1
2,968,105 + +0.3
2,968,106 - +0.2
2,968,324 - OHPLBJKB_02839 0.40 -0.6
2,968,450 + OHPLBJKB_02839 0.64 +0.3
2,968,450 + OHPLBJKB_02839 0.64 +0.7
2,968,451 - OHPLBJKB_02839 0.64 -0.7
2,968,453 + OHPLBJKB_02839 0.65 -0.1
2,968,454 - OHPLBJKB_02839 0.65 +0.1
2,968,672 + OHPLBJKB_02840 0.27 -0.5
2,968,673 - OHPLBJKB_02840 0.27 +0.8
2,968,673 - OHPLBJKB_02840 0.27 -0.9
2,968,687 + OHPLBJKB_02840 0.34 -0.6
2,968,687 + OHPLBJKB_02840 0.34 -1.1
2,968,688 - OHPLBJKB_02840 0.34 +0.8
2,968,795 + OHPLBJKB_02840 0.84 -1.7
2,968,795 + OHPLBJKB_02840 0.84 -1.3
2,968,796 - OHPLBJKB_02840 0.84 -0.2
2,968,981 + OHPLBJKB_02841 0.73 -0.3
2,969,014 + OHPLBJKB_02841 0.89 -1.0
2,969,014 + OHPLBJKB_02841 0.89 -0.6
2,969,015 - OHPLBJKB_02841 0.89 -0.8
2,969,041 + +0.3
2,969,041 + +0.2
2,969,166 + OHPLBJKB_02842 0.28 +0.5
2,969,209 - OHPLBJKB_02842 0.37 -1.3
2,969,209 - OHPLBJKB_02842 0.37 -0.7
2,969,224 - OHPLBJKB_02842 0.40 +0.0
2,969,286 + OHPLBJKB_02842 0.54 -0.6
2,969,287 - OHPLBJKB_02842 0.54 -0.2
2,969,287 - OHPLBJKB_02842 0.54 +2.2
2,969,319 + OHPLBJKB_02842 0.61 +0.4
2,969,320 - OHPLBJKB_02842 0.61 +1.6
2,969,320 - OHPLBJKB_02842 0.61 -0.3
2,969,320 - OHPLBJKB_02842 0.61 +0.3
2,969,672 - OHPLBJKB_02843 0.12 +0.0
2,969,692 - OHPLBJKB_02843 0.15 +0.7
2,969,958 - OHPLBJKB_02843 0.56 -2.1
2,969,990 + OHPLBJKB_02843 0.61 -1.1
2,969,990 + OHPLBJKB_02843 0.61 -0.3
2,969,991 - OHPLBJKB_02843 0.61 -0.4
2,969,991 - OHPLBJKB_02843 0.61 +1.7

Or see this region's nucleotide sequence