Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02838 and OHPLBJKB_02839 are separated by 1 nucleotides OHPLBJKB_02839 and OHPLBJKB_02840 overlap by 20 nucleotides OHPLBJKB_02840 and OHPLBJKB_02841 are separated by 3 nucleotides OHPLBJKB_02841 and OHPLBJKB_02842 overlap by 1 nucleotides OHPLBJKB_02842 and OHPLBJKB_02843 are separated by 95 nucleotides
OHPLBJKB_02838: OHPLBJKB_02838 - hypothetical protein, at 2,967,742 to 2,968,119
_02838
OHPLBJKB_02839: OHPLBJKB_02839 - hypothetical protein, at 2,968,121 to 2,968,633
_02839
OHPLBJKB_02840: OHPLBJKB_02840 - hypothetical protein, at 2,968,614 to 2,968,829
_02840
OHPLBJKB_02841: OHPLBJKB_02841 - hypothetical protein, at 2,968,833 to 2,969,036
_02841
OHPLBJKB_02842: OHPLBJKB_02842 - hypothetical protein, at 2,969,036 to 2,969,500
_02842
OHPLBJKB_02843: OHPLBJKB_02843 - hypothetical protein, at 2,969,596 to 2,970,246
_02843
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2967.848 kb on - strand, within OHPLBJKB_02838 at 2967.848 kb on - strand, within OHPLBJKB_02838 at 2967.848 kb on - strand, within OHPLBJKB_02838 at 2967.848 kb on - strand, within OHPLBJKB_02838 at 2967.879 kb on + strand, within OHPLBJKB_02838 at 2967.880 kb on - strand, within OHPLBJKB_02838 at 2967.883 kb on + strand, within OHPLBJKB_02838 at 2967.884 kb on - strand, within OHPLBJKB_02838 at 2967.901 kb on - strand, within OHPLBJKB_02838 at 2967.925 kb on + strand, within OHPLBJKB_02838 at 2967.926 kb on - strand, within OHPLBJKB_02838 at 2967.926 kb on - strand, within OHPLBJKB_02838 at 2967.951 kb on + strand, within OHPLBJKB_02838 at 2967.952 kb on - strand, within OHPLBJKB_02838 at 2967.956 kb on - strand, within OHPLBJKB_02838 at 2968.050 kb on - strand, within OHPLBJKB_02838 at 2968.105 kb on + strand at 2968.106 kb on - strand at 2968.324 kb on - strand, within OHPLBJKB_02839 at 2968.450 kb on + strand, within OHPLBJKB_02839 at 2968.450 kb on + strand, within OHPLBJKB_02839 at 2968.451 kb on - strand, within OHPLBJKB_02839 at 2968.453 kb on + strand, within OHPLBJKB_02839 at 2968.454 kb on - strand, within OHPLBJKB_02839 at 2968.672 kb on + strand, within OHPLBJKB_02840 at 2968.673 kb on - strand, within OHPLBJKB_02840 at 2968.673 kb on - strand, within OHPLBJKB_02840 at 2968.687 kb on + strand, within OHPLBJKB_02840 at 2968.687 kb on + strand, within OHPLBJKB_02840 at 2968.688 kb on - strand, within OHPLBJKB_02840 at 2968.795 kb on + strand, within OHPLBJKB_02840 at 2968.795 kb on + strand, within OHPLBJKB_02840 at 2968.796 kb on - strand, within OHPLBJKB_02840 at 2968.981 kb on + strand, within OHPLBJKB_02841 at 2969.014 kb on + strand, within OHPLBJKB_02841 at 2969.014 kb on + strand, within OHPLBJKB_02841 at 2969.015 kb on - strand, within OHPLBJKB_02841 at 2969.041 kb on + strand at 2969.041 kb on + strand at 2969.166 kb on + strand, within OHPLBJKB_02842 at 2969.209 kb on - strand, within OHPLBJKB_02842 at 2969.209 kb on - strand, within OHPLBJKB_02842 at 2969.224 kb on - strand, within OHPLBJKB_02842 at 2969.286 kb on + strand, within OHPLBJKB_02842 at 2969.287 kb on - strand, within OHPLBJKB_02842 at 2969.287 kb on - strand, within OHPLBJKB_02842 at 2969.319 kb on + strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.672 kb on - strand, within OHPLBJKB_02843 at 2969.692 kb on - strand, within OHPLBJKB_02843 at 2969.958 kb on - strand, within OHPLBJKB_02843 at 2969.990 kb on + strand, within OHPLBJKB_02843 at 2969.990 kb on + strand, within OHPLBJKB_02843 at 2969.991 kb on - strand, within OHPLBJKB_02843 at 2969.991 kb on - strand, within OHPLBJKB_02843
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 2,967,848 - OHPLBJKB_02838 0.28 -0.0 2,967,848 - OHPLBJKB_02838 0.28 +0.1 2,967,848 - OHPLBJKB_02838 0.28 +0.6 2,967,848 - OHPLBJKB_02838 0.28 +1.1 2,967,879 + OHPLBJKB_02838 0.36 -1.4 2,967,880 - OHPLBJKB_02838 0.37 +0.2 2,967,883 + OHPLBJKB_02838 0.37 -0.5 2,967,884 - OHPLBJKB_02838 0.38 -1.0 2,967,901 - OHPLBJKB_02838 0.42 -1.2 2,967,925 + OHPLBJKB_02838 0.48 +0.6 2,967,926 - OHPLBJKB_02838 0.49 -0.2 2,967,926 - OHPLBJKB_02838 0.49 +0.8 2,967,951 + OHPLBJKB_02838 0.55 -0.7 2,967,952 - OHPLBJKB_02838 0.56 -0.6 2,967,956 - OHPLBJKB_02838 0.57 +0.2 2,968,050 - OHPLBJKB_02838 0.81 -1.1 2,968,105 + +0.3 2,968,106 - +0.2 2,968,324 - OHPLBJKB_02839 0.40 -0.6 2,968,450 + OHPLBJKB_02839 0.64 +0.3 2,968,450 + OHPLBJKB_02839 0.64 +0.7 2,968,451 - OHPLBJKB_02839 0.64 -0.7 2,968,453 + OHPLBJKB_02839 0.65 -0.1 2,968,454 - OHPLBJKB_02839 0.65 +0.1 2,968,672 + OHPLBJKB_02840 0.27 -0.5 2,968,673 - OHPLBJKB_02840 0.27 +0.8 2,968,673 - OHPLBJKB_02840 0.27 -0.9 2,968,687 + OHPLBJKB_02840 0.34 -0.6 2,968,687 + OHPLBJKB_02840 0.34 -1.1 2,968,688 - OHPLBJKB_02840 0.34 +0.8 2,968,795 + OHPLBJKB_02840 0.84 -1.7 2,968,795 + OHPLBJKB_02840 0.84 -1.3 2,968,796 - OHPLBJKB_02840 0.84 -0.2 2,968,981 + OHPLBJKB_02841 0.73 -0.3 2,969,014 + OHPLBJKB_02841 0.89 -1.0 2,969,014 + OHPLBJKB_02841 0.89 -0.6 2,969,015 - OHPLBJKB_02841 0.89 -0.8 2,969,041 + +0.3 2,969,041 + +0.2 2,969,166 + OHPLBJKB_02842 0.28 +0.5 2,969,209 - OHPLBJKB_02842 0.37 -1.3 2,969,209 - OHPLBJKB_02842 0.37 -0.7 2,969,224 - OHPLBJKB_02842 0.40 +0.0 2,969,286 + OHPLBJKB_02842 0.54 -0.6 2,969,287 - OHPLBJKB_02842 0.54 -0.2 2,969,287 - OHPLBJKB_02842 0.54 +2.2 2,969,319 + OHPLBJKB_02842 0.61 +0.4 2,969,320 - OHPLBJKB_02842 0.61 +1.6 2,969,320 - OHPLBJKB_02842 0.61 -0.3 2,969,320 - OHPLBJKB_02842 0.61 +0.3 2,969,672 - OHPLBJKB_02843 0.12 +0.0 2,969,692 - OHPLBJKB_02843 0.15 +0.7 2,969,958 - OHPLBJKB_02843 0.56 -2.1 2,969,990 + OHPLBJKB_02843 0.61 -1.1 2,969,990 + OHPLBJKB_02843 0.61 -0.3 2,969,991 - OHPLBJKB_02843 0.61 -0.4 2,969,991 - OHPLBJKB_02843 0.61 +1.7
Or see this region's nucleotide sequence