Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02469 and OHPLBJKB_02470 are separated by 427 nucleotides OHPLBJKB_02470 and OHPLBJKB_02471 are separated by 427 nucleotides OHPLBJKB_02471 and OHPLBJKB_02472 are separated by 146 nucleotides
OHPLBJKB_02469: OHPLBJKB_02469 - Small toxic polypeptide LdrA, at 2,583,862 to 2,583,969
_02469
OHPLBJKB_02470: OHPLBJKB_02470 - Small toxic polypeptide LdrA, at 2,584,397 to 2,584,504
_02470
OHPLBJKB_02471: OHPLBJKB_02471 - Small toxic polypeptide LdrA, at 2,584,932 to 2,585,039
_02471
OHPLBJKB_02472: OHPLBJKB_02472 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 2,585,186 to 2,586,040
_02472
Position (kb)
2584
2585
2586 Strain fitness (log2 ratio)
-1
0
1 at 2583.968 kb on - strand at 2583.968 kb on - strand at 2584.075 kb on + strand at 2584.607 kb on - strand at 2584.662 kb on - strand at 2584.662 kb on - strand at 2584.736 kb on + strand at 2584.736 kb on + strand at 2584.736 kb on + strand at 2584.737 kb on - strand at 2584.737 kb on - strand at 2584.916 kb on - strand at 2584.916 kb on - strand at 2584.931 kb on + strand at 2584.998 kb on - strand, within OHPLBJKB_02471
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 2,583,968 - +0.1 2,583,968 - -0.1 2,584,075 + +0.9 2,584,607 - -0.1 2,584,662 - -1.5 2,584,662 - -0.8 2,584,736 + -0.3 2,584,736 + -0.4 2,584,736 + +1.5 2,584,737 - -0.2 2,584,737 - +0.7 2,584,916 - +0.6 2,584,916 - +0.1 2,584,931 + -0.5 2,584,998 - OHPLBJKB_02471 0.61 -0.7
Or see this region's nucleotide sequence