Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01671

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01670 and OHPLBJKB_01671 are separated by 10 nucleotidesOHPLBJKB_01671 and OHPLBJKB_01672 are separated by 46 nucleotides OHPLBJKB_01670: OHPLBJKB_01670 - O-antigen chain terminator bifunctional methyltransferase/kinase WbdD, at 1,760,534 to 1,762,660 _01670 OHPLBJKB_01671: OHPLBJKB_01671 - D-inositol-3-phosphate glycosyltransferase, at 1,762,671 to 1,765,193 _01671 OHPLBJKB_01672: OHPLBJKB_01672 - D-inositol-3-phosphate glycosyltransferase, at 1,765,240 to 1,766,385 _01672 Position (kb) 1762 1763 1764 1765 1766Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1761.802 kb on + strand, within OHPLBJKB_01670at 1761.802 kb on + strand, within OHPLBJKB_01670at 1761.803 kb on - strand, within OHPLBJKB_01670at 1761.812 kb on + strand, within OHPLBJKB_01670at 1761.813 kb on - strand, within OHPLBJKB_01670at 1762.215 kb on + strand, within OHPLBJKB_01670at 1762.215 kb on + strand, within OHPLBJKB_01670at 1762.257 kb on + strand, within OHPLBJKB_01670at 1762.257 kb on + strand, within OHPLBJKB_01670at 1762.257 kb on + strand, within OHPLBJKB_01670at 1762.258 kb on - strand, within OHPLBJKB_01670at 1762.258 kb on - strand, within OHPLBJKB_01670at 1762.258 kb on - strand, within OHPLBJKB_01670at 1762.341 kb on - strand, within OHPLBJKB_01670at 1762.393 kb on + strand, within OHPLBJKB_01670at 1762.393 kb on + strand, within OHPLBJKB_01670at 1762.393 kb on + strand, within OHPLBJKB_01670at 1762.394 kb on - strand, within OHPLBJKB_01670at 1762.403 kb on - strand, within OHPLBJKB_01670at 1762.455 kb on + strandat 1762.470 kb on + strandat 1762.471 kb on - strandat 1762.479 kb on + strandat 1762.483 kb on + strandat 1762.483 kb on + strandat 1762.484 kb on - strandat 1762.484 kb on - strandat 1762.518 kb on - strandat 1762.526 kb on - strandat 1762.612 kb on - strandat 1762.634 kb on + strandat 1762.654 kb on + strandat 1762.658 kb on + strandat 1762.659 kb on - strandat 1762.668 kb on - strandat 1762.677 kb on - strandat 1762.677 kb on - strandat 1762.712 kb on + strandat 1762.736 kb on + strandat 1762.791 kb on - strandat 1762.810 kb on - strandat 1762.872 kb on - strandat 1762.872 kb on - strandat 1762.997 kb on + strand, within OHPLBJKB_01671at 1763.001 kb on - strand, within OHPLBJKB_01671at 1763.001 kb on - strand, within OHPLBJKB_01671at 1763.018 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.028 kb on + strand, within OHPLBJKB_01671at 1763.029 kb on - strand, within OHPLBJKB_01671at 1763.029 kb on - strand, within OHPLBJKB_01671at 1763.029 kb on - strand, within OHPLBJKB_01671at 1763.029 kb on - strand, within OHPLBJKB_01671at 1763.029 kb on - strand, within OHPLBJKB_01671at 1763.030 kb on + strand, within OHPLBJKB_01671at 1763.030 kb on + strand, within OHPLBJKB_01671at 1763.077 kb on + strand, within OHPLBJKB_01671at 1763.105 kb on + strand, within OHPLBJKB_01671at 1763.106 kb on - strand, within OHPLBJKB_01671at 1763.145 kb on + strand, within OHPLBJKB_01671at 1763.145 kb on + strand, within OHPLBJKB_01671at 1763.146 kb on - strand, within OHPLBJKB_01671at 1763.153 kb on + strand, within OHPLBJKB_01671at 1763.153 kb on + strand, within OHPLBJKB_01671at 1763.153 kb on + strand, within OHPLBJKB_01671at 1763.154 kb on - strand, within OHPLBJKB_01671at 1763.154 kb on - strand, within OHPLBJKB_01671at 1763.226 kb on + strand, within OHPLBJKB_01671at 1763.312 kb on + strand, within OHPLBJKB_01671at 1763.334 kb on + strand, within OHPLBJKB_01671at 1763.463 kb on + strand, within OHPLBJKB_01671at 1763.464 kb on - strand, within OHPLBJKB_01671at 1763.465 kb on + strand, within OHPLBJKB_01671at 1763.514 kb on + strand, within OHPLBJKB_01671at 1763.514 kb on + strand, within OHPLBJKB_01671at 1763.514 kb on + strand, within OHPLBJKB_01671at 1763.514 kb on + strand, within OHPLBJKB_01671at 1763.538 kb on - strand, within OHPLBJKB_01671at 1763.544 kb on - strand, within OHPLBJKB_01671at 1763.671 kb on + strand, within OHPLBJKB_01671at 1763.672 kb on - strand, within OHPLBJKB_01671at 1763.684 kb on + strand, within OHPLBJKB_01671at 1764.014 kb on + strand, within OHPLBJKB_01671at 1764.015 kb on - strand, within OHPLBJKB_01671at 1764.020 kb on + strand, within OHPLBJKB_01671at 1764.021 kb on - strand, within OHPLBJKB_01671at 1764.107 kb on + strand, within OHPLBJKB_01671at 1764.121 kb on + strand, within OHPLBJKB_01671at 1764.162 kb on + strand, within OHPLBJKB_01671at 1764.165 kb on + strand, within OHPLBJKB_01671at 1764.165 kb on + strand, within OHPLBJKB_01671at 1764.166 kb on - strand, within OHPLBJKB_01671at 1764.166 kb on - strand, within OHPLBJKB_01671at 1764.166 kb on - strand, within OHPLBJKB_01671at 1764.166 kb on - strand, within OHPLBJKB_01671at 1764.372 kb on - strand, within OHPLBJKB_01671at 1764.372 kb on - strand, within OHPLBJKB_01671at 1764.663 kb on - strand, within OHPLBJKB_01671at 1764.663 kb on - strand, within OHPLBJKB_01671at 1764.747 kb on + strand, within OHPLBJKB_01671at 1764.747 kb on + strand, within OHPLBJKB_01671at 1764.748 kb on - strand, within OHPLBJKB_01671at 1764.748 kb on - strand, within OHPLBJKB_01671at 1764.805 kb on + strand, within OHPLBJKB_01671at 1764.878 kb on - strand, within OHPLBJKB_01671at 1764.879 kb on + strand, within OHPLBJKB_01671at 1765.080 kb on + strandat 1765.112 kb on + strandat 1765.269 kb on + strandat 1765.269 kb on + strandat 1765.269 kb on + strandat 1765.270 kb on - strandat 1765.270 kb on - strandat 1765.531 kb on + strand, within OHPLBJKB_01672at 1765.532 kb on - strand, within OHPLBJKB_01672at 1765.537 kb on + strand, within OHPLBJKB_01672at 1765.537 kb on + strand, within OHPLBJKB_01672at 1765.537 kb on + strand, within OHPLBJKB_01672at 1765.538 kb on - strand, within OHPLBJKB_01672at 1765.611 kb on + strand, within OHPLBJKB_01672at 1765.624 kb on + strand, within OHPLBJKB_01672at 1765.648 kb on + strand, within OHPLBJKB_01672at 1765.648 kb on + strand, within OHPLBJKB_01672at 1765.648 kb on + strand, within OHPLBJKB_01672at 1765.648 kb on + strand, within OHPLBJKB_01672at 1765.745 kb on - strand, within OHPLBJKB_01672at 1765.792 kb on + strand, within OHPLBJKB_01672at 1765.793 kb on - strand, within OHPLBJKB_01672at 1765.795 kb on - strand, within OHPLBJKB_01672at 1765.858 kb on + strand, within OHPLBJKB_01672at 1765.865 kb on + strand, within OHPLBJKB_01672at 1765.865 kb on + strand, within OHPLBJKB_01672at 1765.865 kb on + strand, within OHPLBJKB_01672at 1765.867 kb on + strand, within OHPLBJKB_01672at 1765.867 kb on + strand, within OHPLBJKB_01672at 1765.867 kb on + strand, within OHPLBJKB_01672at 1765.867 kb on + strand, within OHPLBJKB_01672at 1765.867 kb on + strand, within OHPLBJKB_01672at 1765.868 kb on - strand, within OHPLBJKB_01672at 1765.868 kb on - strand, within OHPLBJKB_01672at 1765.868 kb on - strand, within OHPLBJKB_01672at 1765.868 kb on - strand, within OHPLBJKB_01672at 1765.868 kb on - strand, within OHPLBJKB_01672at 1765.869 kb on + strand, within OHPLBJKB_01672at 1765.869 kb on + strand, within OHPLBJKB_01672at 1765.870 kb on - strand, within OHPLBJKB_01672at 1766.050 kb on + strand, within OHPLBJKB_01672at 1766.051 kb on - strand, within OHPLBJKB_01672at 1766.132 kb on + strand, within OHPLBJKB_01672at 1766.136 kb on + strand, within OHPLBJKB_01672at 1766.136 kb on + strand, within OHPLBJKB_01672at 1766.136 kb on + strand, within OHPLBJKB_01672at 1766.137 kb on - strand, within OHPLBJKB_01672at 1766.137 kb on - strand, within OHPLBJKB_01672at 1766.137 kb on - strand, within OHPLBJKB_01672at 1766.137 kb on - strand, within OHPLBJKB_01672at 1766.137 kb on - strand, within OHPLBJKB_01672at 1766.169 kb on - strand, within OHPLBJKB_01672at 1766.171 kb on + strand, within OHPLBJKB_01672at 1766.171 kb on + strand, within OHPLBJKB_01672at 1766.171 kb on + strand, within OHPLBJKB_01672at 1766.172 kb on - strand, within OHPLBJKB_01672at 1766.172 kb on - strand, within OHPLBJKB_01672at 1766.172 kb on - strand, within OHPLBJKB_01672

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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1,761,802 + OHPLBJKB_01670 0.60 -1.8
1,761,802 + OHPLBJKB_01670 0.60 -1.8
1,761,803 - OHPLBJKB_01670 0.60 -0.3
1,761,812 + OHPLBJKB_01670 0.60 +3.3
1,761,813 - OHPLBJKB_01670 0.60 -0.7
1,762,215 + OHPLBJKB_01670 0.79 -2.0
1,762,215 + OHPLBJKB_01670 0.79 -1.7
1,762,257 + OHPLBJKB_01670 0.81 -2.1
1,762,257 + OHPLBJKB_01670 0.81 -2.1
1,762,257 + OHPLBJKB_01670 0.81 -1.3
1,762,258 - OHPLBJKB_01670 0.81 -0.1
1,762,258 - OHPLBJKB_01670 0.81 -0.3
1,762,258 - OHPLBJKB_01670 0.81 -0.2
1,762,341 - OHPLBJKB_01670 0.85 -1.0
1,762,393 + OHPLBJKB_01670 0.87 -1.1
1,762,393 + OHPLBJKB_01670 0.87 -0.7
1,762,393 + OHPLBJKB_01670 0.87 -2.1
1,762,394 - OHPLBJKB_01670 0.87 +0.9
1,762,403 - OHPLBJKB_01670 0.88 +1.3
1,762,455 + +1.3
1,762,470 + +0.7
1,762,471 - +0.3
1,762,479 + -1.2
1,762,483 + -1.8
1,762,483 + -2.3
1,762,484 - -0.2
1,762,484 - -1.6
1,762,518 - -0.3
1,762,526 - -0.4
1,762,612 - -1.8
1,762,634 + -1.3
1,762,654 + -0.6
1,762,658 + -0.1
1,762,659 - -1.7
1,762,668 - +1.1
1,762,677 - -1.6
1,762,677 - -0.2
1,762,712 + -1.0
1,762,736 + -2.3
1,762,791 - +0.8
1,762,810 - -0.1
1,762,872 - -1.4
1,762,872 - +0.2
1,762,997 + OHPLBJKB_01671 0.13 -0.5
1,763,001 - OHPLBJKB_01671 0.13 -1.8
1,763,001 - OHPLBJKB_01671 0.13 -0.4
1,763,018 + OHPLBJKB_01671 0.14 -2.3
1,763,028 + OHPLBJKB_01671 0.14 -3.0
1,763,028 + OHPLBJKB_01671 0.14 -1.1
1,763,028 + OHPLBJKB_01671 0.14 -0.6
1,763,028 + OHPLBJKB_01671 0.14 -0.3
1,763,028 + OHPLBJKB_01671 0.14 -2.9
1,763,028 + OHPLBJKB_01671 0.14 -1.7
1,763,028 + OHPLBJKB_01671 0.14 -1.8
1,763,029 - OHPLBJKB_01671 0.14 -1.5
1,763,029 - OHPLBJKB_01671 0.14 -1.7
1,763,029 - OHPLBJKB_01671 0.14 -0.3
1,763,029 - OHPLBJKB_01671 0.14 -0.2
1,763,029 - OHPLBJKB_01671 0.14 -1.2
1,763,030 + OHPLBJKB_01671 0.14 -0.4
1,763,030 + OHPLBJKB_01671 0.14 +1.4
1,763,077 + OHPLBJKB_01671 0.16 +0.4
1,763,105 + OHPLBJKB_01671 0.17 -1.1
1,763,106 - OHPLBJKB_01671 0.17 -1.3
1,763,145 + OHPLBJKB_01671 0.19 +0.4
1,763,145 + OHPLBJKB_01671 0.19 -1.8
1,763,146 - OHPLBJKB_01671 0.19 -1.9
1,763,153 + OHPLBJKB_01671 0.19 +0.0
1,763,153 + OHPLBJKB_01671 0.19 -0.6
1,763,153 + OHPLBJKB_01671 0.19 -3.5
1,763,154 - OHPLBJKB_01671 0.19 -2.1
1,763,154 - OHPLBJKB_01671 0.19 -0.8
1,763,226 + OHPLBJKB_01671 0.22 -3.1
1,763,312 + OHPLBJKB_01671 0.25 -0.5
1,763,334 + OHPLBJKB_01671 0.26 -1.0
1,763,463 + OHPLBJKB_01671 0.31 -0.1
1,763,464 - OHPLBJKB_01671 0.31 -2.1
1,763,465 + OHPLBJKB_01671 0.31 +0.7
1,763,514 + OHPLBJKB_01671 0.33 -0.6
1,763,514 + OHPLBJKB_01671 0.33 -0.8
1,763,514 + OHPLBJKB_01671 0.33 +0.2
1,763,514 + OHPLBJKB_01671 0.33 -1.1
1,763,538 - OHPLBJKB_01671 0.34 -1.0
1,763,544 - OHPLBJKB_01671 0.35 -1.5
1,763,671 + OHPLBJKB_01671 0.40 -1.6
1,763,672 - OHPLBJKB_01671 0.40 -0.8
1,763,684 + OHPLBJKB_01671 0.40 -1.9
1,764,014 + OHPLBJKB_01671 0.53 -1.1
1,764,015 - OHPLBJKB_01671 0.53 +0.1
1,764,020 + OHPLBJKB_01671 0.53 -1.1
1,764,021 - OHPLBJKB_01671 0.54 +0.2
1,764,107 + OHPLBJKB_01671 0.57 -1.6
1,764,121 + OHPLBJKB_01671 0.57 -0.9
1,764,162 + OHPLBJKB_01671 0.59 -2.9
1,764,165 + OHPLBJKB_01671 0.59 -0.9
1,764,165 + OHPLBJKB_01671 0.59 -1.1
1,764,166 - OHPLBJKB_01671 0.59 -1.3
1,764,166 - OHPLBJKB_01671 0.59 -1.6
1,764,166 - OHPLBJKB_01671 0.59 -2.1
1,764,166 - OHPLBJKB_01671 0.59 -0.6
1,764,372 - OHPLBJKB_01671 0.67 -1.2
1,764,372 - OHPLBJKB_01671 0.67 -1.7
1,764,663 - OHPLBJKB_01671 0.79 +0.1
1,764,663 - OHPLBJKB_01671 0.79 -1.0
1,764,747 + OHPLBJKB_01671 0.82 -0.0
1,764,747 + OHPLBJKB_01671 0.82 -2.0
1,764,748 - OHPLBJKB_01671 0.82 +0.4
1,764,748 - OHPLBJKB_01671 0.82 -1.7
1,764,805 + OHPLBJKB_01671 0.85 -0.3
1,764,878 - OHPLBJKB_01671 0.87 -1.2
1,764,879 + OHPLBJKB_01671 0.88 -0.8
1,765,080 + -2.3
1,765,112 + -2.7
1,765,269 + +0.1
1,765,269 + -1.8
1,765,269 + -1.8
1,765,270 - -0.8
1,765,270 - -1.8
1,765,531 + OHPLBJKB_01672 0.25 +0.2
1,765,532 - OHPLBJKB_01672 0.25 +0.4
1,765,537 + OHPLBJKB_01672 0.26 -1.5
1,765,537 + OHPLBJKB_01672 0.26 -1.2
1,765,537 + OHPLBJKB_01672 0.26 -1.5
1,765,538 - OHPLBJKB_01672 0.26 -2.2
1,765,611 + OHPLBJKB_01672 0.32 -3.2
1,765,624 + OHPLBJKB_01672 0.34 +0.2
1,765,648 + OHPLBJKB_01672 0.36 -0.9
1,765,648 + OHPLBJKB_01672 0.36 -1.1
1,765,648 + OHPLBJKB_01672 0.36 -0.9
1,765,648 + OHPLBJKB_01672 0.36 -1.2
1,765,745 - OHPLBJKB_01672 0.44 +1.2
1,765,792 + OHPLBJKB_01672 0.48 -1.8
1,765,793 - OHPLBJKB_01672 0.48 -0.6
1,765,795 - OHPLBJKB_01672 0.48 -2.8
1,765,858 + OHPLBJKB_01672 0.54 -2.1
1,765,865 + OHPLBJKB_01672 0.55 -1.6
1,765,865 + OHPLBJKB_01672 0.55 -0.8
1,765,865 + OHPLBJKB_01672 0.55 -1.8
1,765,867 + OHPLBJKB_01672 0.55 -1.7
1,765,867 + OHPLBJKB_01672 0.55 +0.1
1,765,867 + OHPLBJKB_01672 0.55 -1.5
1,765,867 + OHPLBJKB_01672 0.55 -1.1
1,765,867 + OHPLBJKB_01672 0.55 -1.4
1,765,868 - OHPLBJKB_01672 0.55 -0.8
1,765,868 - OHPLBJKB_01672 0.55 -0.8
1,765,868 - OHPLBJKB_01672 0.55 -0.8
1,765,868 - OHPLBJKB_01672 0.55 -1.3
1,765,868 - OHPLBJKB_01672 0.55 -2.1
1,765,869 + OHPLBJKB_01672 0.55 -1.3
1,765,869 + OHPLBJKB_01672 0.55 -2.1
1,765,870 - OHPLBJKB_01672 0.55 -0.0
1,766,050 + OHPLBJKB_01672 0.71 +0.1
1,766,051 - OHPLBJKB_01672 0.71 -1.8
1,766,132 + OHPLBJKB_01672 0.78 -0.5
1,766,136 + OHPLBJKB_01672 0.78 -0.6
1,766,136 + OHPLBJKB_01672 0.78 -1.6
1,766,136 + OHPLBJKB_01672 0.78 -0.9
1,766,137 - OHPLBJKB_01672 0.78 -1.3
1,766,137 - OHPLBJKB_01672 0.78 -1.0
1,766,137 - OHPLBJKB_01672 0.78 -1.7
1,766,137 - OHPLBJKB_01672 0.78 -0.6
1,766,137 - OHPLBJKB_01672 0.78 -2.7
1,766,169 - OHPLBJKB_01672 0.81 +0.4
1,766,171 + OHPLBJKB_01672 0.81 -0.9
1,766,171 + OHPLBJKB_01672 0.81 -1.6
1,766,171 + OHPLBJKB_01672 0.81 -1.5
1,766,172 - OHPLBJKB_01672 0.81 -2.0
1,766,172 - OHPLBJKB_01672 0.81 +0.2
1,766,172 - OHPLBJKB_01672 0.81 -2.1

Or see this region's nucleotide sequence