Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01425

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01423 and OHPLBJKB_01424 overlap by 4 nucleotidesOHPLBJKB_01424 and OHPLBJKB_01425 are separated by 14 nucleotidesOHPLBJKB_01425 and OHPLBJKB_01426 are separated by 11 nucleotidesOHPLBJKB_01426 and OHPLBJKB_01427 overlap by 4 nucleotidesOHPLBJKB_01427 and OHPLBJKB_01428 overlap by 4 nucleotides OHPLBJKB_01423: OHPLBJKB_01423 - NADH-quinone oxidoreductase subunit G, at 1,468,890 to 1,471,616 _01423 OHPLBJKB_01424: OHPLBJKB_01424 - NADH-quinone oxidoreductase subunit H, at 1,471,613 to 1,472,590 _01424 OHPLBJKB_01425: OHPLBJKB_01425 - NADH-quinone oxidoreductase subunit I, at 1,472,605 to 1,473,147 _01425 OHPLBJKB_01426: OHPLBJKB_01426 - NADH-quinone oxidoreductase subunit J, at 1,473,159 to 1,473,713 _01426 OHPLBJKB_01427: OHPLBJKB_01427 - NADH-quinone oxidoreductase subunit K, at 1,473,710 to 1,474,012 _01427 OHPLBJKB_01428: OHPLBJKB_01428 - NADH-quinone oxidoreductase subunit L, at 1,474,009 to 1,475,850 _01428 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -2 -1 0 1 2at 1471.759 kb on + strand, within OHPLBJKB_01424at 1471.760 kb on - strand, within OHPLBJKB_01424at 1472.024 kb on - strand, within OHPLBJKB_01424at 1472.024 kb on - strand, within OHPLBJKB_01424at 1472.204 kb on - strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424at 1472.653 kb on - strandat 1472.719 kb on + strand, within OHPLBJKB_01425at 1472.826 kb on + strand, within OHPLBJKB_01425at 1472.978 kb on - strand, within OHPLBJKB_01425at 1473.046 kb on + strand, within OHPLBJKB_01425at 1473.049 kb on - strand, within OHPLBJKB_01425at 1473.049 kb on - strand, within OHPLBJKB_01425at 1473.069 kb on + strand, within OHPLBJKB_01425at 1473.175 kb on - strandat 1473.176 kb on + strandat 1473.176 kb on + strandat 1473.176 kb on + strandat 1473.196 kb on + strandat 1473.196 kb on + strandat 1473.197 kb on - strandat 1473.258 kb on - strand, within OHPLBJKB_01426at 1473.304 kb on - strand, within OHPLBJKB_01426at 1473.304 kb on - strand, within OHPLBJKB_01426at 1473.572 kb on - strand, within OHPLBJKB_01426at 1473.593 kb on + strand, within OHPLBJKB_01426at 1473.593 kb on + strand, within OHPLBJKB_01426at 1473.594 kb on - strand, within OHPLBJKB_01426at 1473.720 kb on + strandat 1473.720 kb on + strandat 1473.750 kb on + strand, within OHPLBJKB_01427at 1473.893 kb on + strand, within OHPLBJKB_01427at 1473.893 kb on + strand, within OHPLBJKB_01427at 1473.893 kb on + strand, within OHPLBJKB_01427at 1473.893 kb on + strand, within OHPLBJKB_01427at 1473.893 kb on + strand, within OHPLBJKB_01427at 1473.894 kb on - strand, within OHPLBJKB_01427at 1473.894 kb on - strand, within OHPLBJKB_01427at 1473.894 kb on - strand, within OHPLBJKB_01427at 1473.894 kb on - strand, within OHPLBJKB_01427at 1473.993 kb on + strandat 1473.993 kb on + strandat 1473.994 kb on - strandat 1473.994 kb on - strandat 1474.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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1,471,759 + OHPLBJKB_01424 0.15 -1.3
1,471,760 - OHPLBJKB_01424 0.15 -0.6
1,472,024 - OHPLBJKB_01424 0.42 +0.5
1,472,024 - OHPLBJKB_01424 0.42 -0.9
1,472,204 - OHPLBJKB_01424 0.60 -1.4
1,472,336 + OHPLBJKB_01424 0.74 -0.2
1,472,336 + OHPLBJKB_01424 0.74 +1.3
1,472,336 + OHPLBJKB_01424 0.74 +0.7
1,472,337 - OHPLBJKB_01424 0.74 -0.7
1,472,337 - OHPLBJKB_01424 0.74 -2.3
1,472,337 - OHPLBJKB_01424 0.74 -0.2
1,472,653 - -0.5
1,472,719 + OHPLBJKB_01425 0.21 -1.3
1,472,826 + OHPLBJKB_01425 0.41 -0.3
1,472,978 - OHPLBJKB_01425 0.69 +0.3
1,473,046 + OHPLBJKB_01425 0.81 +0.7
1,473,049 - OHPLBJKB_01425 0.82 -1.2
1,473,049 - OHPLBJKB_01425 0.82 -0.1
1,473,069 + OHPLBJKB_01425 0.85 -0.1
1,473,175 - -1.2
1,473,176 + -1.5
1,473,176 + -0.9
1,473,176 + +0.1
1,473,196 + -1.2
1,473,196 + -1.6
1,473,197 - -0.3
1,473,258 - OHPLBJKB_01426 0.18 -0.3
1,473,304 - OHPLBJKB_01426 0.26 +0.3
1,473,304 - OHPLBJKB_01426 0.26 -0.3
1,473,572 - OHPLBJKB_01426 0.74 +0.3
1,473,593 + OHPLBJKB_01426 0.78 -0.1
1,473,593 + OHPLBJKB_01426 0.78 -0.3
1,473,594 - OHPLBJKB_01426 0.78 -0.2
1,473,720 + +0.2
1,473,720 + -0.2
1,473,750 + OHPLBJKB_01427 0.13 -1.0
1,473,893 + OHPLBJKB_01427 0.60 -1.6
1,473,893 + OHPLBJKB_01427 0.60 +0.7
1,473,893 + OHPLBJKB_01427 0.60 +0.5
1,473,893 + OHPLBJKB_01427 0.60 -0.6
1,473,893 + OHPLBJKB_01427 0.60 +1.0
1,473,894 - OHPLBJKB_01427 0.61 -0.1
1,473,894 - OHPLBJKB_01427 0.61 +0.5
1,473,894 - OHPLBJKB_01427 0.61 +0.9
1,473,894 - OHPLBJKB_01427 0.61 +0.5
1,473,993 + +0.2
1,473,993 + +2.3
1,473,994 - -0.5
1,473,994 - -0.5
1,474,032 + +1.3

Or see this region's nucleotide sequence