Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00911

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00910 and OHPLBJKB_00911 overlap by 1 nucleotidesOHPLBJKB_00911 and OHPLBJKB_00912 are separated by 61 nucleotides OHPLBJKB_00910: OHPLBJKB_00910 - RecBCD enzyme subunit RecB, at 936,579 to 940,121 _00910 OHPLBJKB_00911: OHPLBJKB_00911 - RecBCD enzyme subunit RecD, at 940,121 to 941,947 _00911 OHPLBJKB_00912: OHPLBJKB_00912 - Amino-acid acetyltransferase, at 942,009 to 943,340 _00912 Position (kb) 940 941 942Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 939.752 kb on - strand, within OHPLBJKB_00910at 939.918 kb on + strandat 939.997 kb on - strandat 940.120 kb on - strandat 940.167 kb on + strandat 940.167 kb on + strandat 940.168 kb on - strandat 940.245 kb on + strandat 940.245 kb on + strandat 940.245 kb on + strandat 940.246 kb on - strandat 940.246 kb on - strandat 940.246 kb on - strandat 940.246 kb on - strandat 940.353 kb on + strand, within OHPLBJKB_00911at 940.354 kb on - strand, within OHPLBJKB_00911at 940.442 kb on + strand, within OHPLBJKB_00911at 940.442 kb on + strand, within OHPLBJKB_00911at 940.443 kb on - strand, within OHPLBJKB_00911at 940.443 kb on - strand, within OHPLBJKB_00911at 940.443 kb on - strand, within OHPLBJKB_00911at 940.463 kb on - strand, within OHPLBJKB_00911at 940.527 kb on + strand, within OHPLBJKB_00911at 940.527 kb on + strand, within OHPLBJKB_00911at 940.574 kb on - strand, within OHPLBJKB_00911at 940.574 kb on - strand, within OHPLBJKB_00911at 940.684 kb on - strand, within OHPLBJKB_00911at 940.789 kb on - strand, within OHPLBJKB_00911at 940.878 kb on + strand, within OHPLBJKB_00911at 940.878 kb on + strand, within OHPLBJKB_00911at 940.878 kb on + strand, within OHPLBJKB_00911at 940.923 kb on + strand, within OHPLBJKB_00911at 940.924 kb on - strand, within OHPLBJKB_00911at 941.066 kb on + strand, within OHPLBJKB_00911at 941.067 kb on - strand, within OHPLBJKB_00911at 941.106 kb on + strand, within OHPLBJKB_00911at 941.229 kb on + strand, within OHPLBJKB_00911at 941.230 kb on - strand, within OHPLBJKB_00911at 941.255 kb on - strand, within OHPLBJKB_00911at 941.313 kb on + strand, within OHPLBJKB_00911at 941.330 kb on + strand, within OHPLBJKB_00911at 941.330 kb on + strand, within OHPLBJKB_00911at 941.331 kb on - strand, within OHPLBJKB_00911at 941.331 kb on - strand, within OHPLBJKB_00911at 941.332 kb on + strand, within OHPLBJKB_00911at 941.332 kb on + strand, within OHPLBJKB_00911at 941.332 kb on + strand, within OHPLBJKB_00911at 941.332 kb on + strand, within OHPLBJKB_00911at 941.333 kb on - strand, within OHPLBJKB_00911at 941.333 kb on - strand, within OHPLBJKB_00911at 941.333 kb on - strand, within OHPLBJKB_00911at 941.409 kb on + strand, within OHPLBJKB_00911at 941.674 kb on + strand, within OHPLBJKB_00911at 941.675 kb on - strand, within OHPLBJKB_00911at 941.677 kb on + strand, within OHPLBJKB_00911at 941.677 kb on + strand, within OHPLBJKB_00911at 941.678 kb on - strand, within OHPLBJKB_00911at 941.678 kb on - strand, within OHPLBJKB_00911at 941.678 kb on - strand, within OHPLBJKB_00911at 941.678 kb on - strand, within OHPLBJKB_00911at 941.678 kb on - strand, within OHPLBJKB_00911at 941.716 kb on + strand, within OHPLBJKB_00911at 941.716 kb on + strand, within OHPLBJKB_00911at 941.717 kb on - strand, within OHPLBJKB_00911at 941.717 kb on - strand, within OHPLBJKB_00911at 941.734 kb on - strand, within OHPLBJKB_00911at 941.734 kb on - strand, within OHPLBJKB_00911at 941.737 kb on + strand, within OHPLBJKB_00911at 941.737 kb on + strand, within OHPLBJKB_00911at 941.737 kb on + strand, within OHPLBJKB_00911at 941.737 kb on + strand, within OHPLBJKB_00911at 941.738 kb on - strand, within OHPLBJKB_00911at 941.819 kb on + strandat 941.819 kb on + strandat 941.819 kb on + strandat 941.820 kb on - strandat 941.820 kb on - strandat 941.820 kb on - strandat 941.820 kb on - strandat 941.821 kb on + strandat 941.859 kb on - strandat 941.874 kb on + strandat 941.874 kb on + strandat 941.875 kb on - strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.877 kb on + strandat 941.878 kb on - strandat 941.899 kb on + strandat 941.900 kb on - strandat 941.932 kb on + strandat 941.933 kb on - strandat 941.933 kb on - strandat 941.933 kb on - strandat 941.946 kb on - strandat 941.951 kb on + strandat 941.951 kb on + strandat 941.951 kb on + strandat 941.952 kb on - strandat 941.969 kb on + strandat 941.970 kb on - strandat 941.978 kb on + strandat 941.979 kb on - strandat 942.016 kb on - strandat 942.042 kb on - strandat 942.049 kb on + strandat 942.049 kb on + strandat 942.050 kb on - strandat 942.050 kb on - strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.055 kb on + strandat 942.056 kb on - strandat 942.056 kb on - strandat 942.056 kb on - strandat 942.056 kb on - strandat 942.056 kb on - strandat 942.159 kb on + strand, within OHPLBJKB_00912at 942.302 kb on + strand, within OHPLBJKB_00912at 942.303 kb on - strand, within OHPLBJKB_00912at 942.380 kb on + strand, within OHPLBJKB_00912at 942.380 kb on + strand, within OHPLBJKB_00912at 942.380 kb on + strand, within OHPLBJKB_00912at 942.380 kb on + strand, within OHPLBJKB_00912at 942.381 kb on - strand, within OHPLBJKB_00912at 942.485 kb on + strand, within OHPLBJKB_00912at 942.540 kb on + strand, within OHPLBJKB_00912at 942.541 kb on - strand, within OHPLBJKB_00912at 942.613 kb on + strand, within OHPLBJKB_00912at 942.613 kb on + strand, within OHPLBJKB_00912at 942.680 kb on + strand, within OHPLBJKB_00912at 942.681 kb on - strand, within OHPLBJKB_00912at 942.902 kb on - strand, within OHPLBJKB_00912at 942.902 kb on - strand, within OHPLBJKB_00912

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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939,752 - OHPLBJKB_00910 0.90 +1.4
939,918 + +1.4
939,997 - +0.8
940,120 - -2.0
940,167 + -2.9
940,167 + -2.2
940,168 - -0.2
940,245 + +0.4
940,245 + -2.5
940,245 + -0.2
940,246 - -2.1
940,246 - -1.2
940,246 - -2.2
940,246 - +0.4
940,353 + OHPLBJKB_00911 0.13 -1.8
940,354 - OHPLBJKB_00911 0.13 -2.2
940,442 + OHPLBJKB_00911 0.18 -2.7
940,442 + OHPLBJKB_00911 0.18 -1.3
940,443 - OHPLBJKB_00911 0.18 -0.6
940,443 - OHPLBJKB_00911 0.18 -1.7
940,443 - OHPLBJKB_00911 0.18 -0.9
940,463 - OHPLBJKB_00911 0.19 -0.6
940,527 + OHPLBJKB_00911 0.22 -2.0
940,527 + OHPLBJKB_00911 0.22 -0.8
940,574 - OHPLBJKB_00911 0.25 -0.9
940,574 - OHPLBJKB_00911 0.25 -1.1
940,684 - OHPLBJKB_00911 0.31 -0.3
940,789 - OHPLBJKB_00911 0.37 -1.2
940,878 + OHPLBJKB_00911 0.41 -1.9
940,878 + OHPLBJKB_00911 0.41 -1.4
940,878 + OHPLBJKB_00911 0.41 -0.4
940,923 + OHPLBJKB_00911 0.44 -2.1
940,924 - OHPLBJKB_00911 0.44 -0.4
941,066 + OHPLBJKB_00911 0.52 -0.4
941,067 - OHPLBJKB_00911 0.52 -0.9
941,106 + OHPLBJKB_00911 0.54 -0.9
941,229 + OHPLBJKB_00911 0.61 -1.9
941,230 - OHPLBJKB_00911 0.61 -2.0
941,255 - OHPLBJKB_00911 0.62 -0.9
941,313 + OHPLBJKB_00911 0.65 -0.4
941,330 + OHPLBJKB_00911 0.66 +0.4
941,330 + OHPLBJKB_00911 0.66 -3.3
941,331 - OHPLBJKB_00911 0.66 -1.8
941,331 - OHPLBJKB_00911 0.66 -1.4
941,332 + OHPLBJKB_00911 0.66 -1.3
941,332 + OHPLBJKB_00911 0.66 -0.8
941,332 + OHPLBJKB_00911 0.66 -1.1
941,332 + OHPLBJKB_00911 0.66 +0.4
941,333 - OHPLBJKB_00911 0.66 -2.4
941,333 - OHPLBJKB_00911 0.66 -2.6
941,333 - OHPLBJKB_00911 0.66 -0.4
941,409 + OHPLBJKB_00911 0.70 -1.8
941,674 + OHPLBJKB_00911 0.85 -1.9
941,675 - OHPLBJKB_00911 0.85 -1.4
941,677 + OHPLBJKB_00911 0.85 -1.6
941,677 + OHPLBJKB_00911 0.85 -3.0
941,678 - OHPLBJKB_00911 0.85 -2.4
941,678 - OHPLBJKB_00911 0.85 -1.4
941,678 - OHPLBJKB_00911 0.85 -1.4
941,678 - OHPLBJKB_00911 0.85 -2.4
941,678 - OHPLBJKB_00911 0.85 -2.0
941,716 + OHPLBJKB_00911 0.87 -0.2
941,716 + OHPLBJKB_00911 0.87 -2.3
941,717 - OHPLBJKB_00911 0.87 -0.9
941,717 - OHPLBJKB_00911 0.87 -2.0
941,734 - OHPLBJKB_00911 0.88 -0.6
941,734 - OHPLBJKB_00911 0.88 -1.2
941,737 + OHPLBJKB_00911 0.88 -2.5
941,737 + OHPLBJKB_00911 0.88 -1.4
941,737 + OHPLBJKB_00911 0.88 -1.5
941,737 + OHPLBJKB_00911 0.88 -2.0
941,738 - OHPLBJKB_00911 0.89 -0.9
941,819 + -1.2
941,819 + -2.3
941,819 + -0.8
941,820 - -0.6
941,820 - -1.3
941,820 - -1.2
941,820 - +0.8
941,821 + -0.9
941,859 - -3.4
941,874 + -2.3
941,874 + -1.1
941,875 - -1.4
941,877 + -0.9
941,877 + -4.4
941,877 + +0.8
941,877 + -2.8
941,877 + -1.4
941,877 + -2.6
941,877 + -3.5
941,877 + -1.8
941,877 + -2.2
941,877 + -1.1
941,878 - -0.6
941,899 + -1.4
941,900 - +0.1
941,932 + +1.8
941,933 - -0.3
941,933 - +0.0
941,933 - -0.3
941,946 - +1.9
941,951 + +0.7
941,951 + +1.2
941,951 + +0.1
941,952 - -0.4
941,969 + -1.1
941,970 - -0.7
941,978 + -1.3
941,979 - -2.3
942,016 - -1.4
942,042 - +0.4
942,049 + -0.9
942,049 + -0.2
942,050 - +1.1
942,050 - -0.0
942,055 + -2.2
942,055 + -1.0
942,055 + -0.1
942,055 + +0.2
942,055 + +0.4
942,055 + +0.2
942,055 + -1.1
942,056 - +1.1
942,056 - +0.3
942,056 - +0.1
942,056 - -1.8
942,056 - +1.0
942,159 + OHPLBJKB_00912 0.11 +0.9
942,302 + OHPLBJKB_00912 0.22 +0.4
942,303 - OHPLBJKB_00912 0.22 +0.9
942,380 + OHPLBJKB_00912 0.28 +0.5
942,380 + OHPLBJKB_00912 0.28 -0.7
942,380 + OHPLBJKB_00912 0.28 +1.8
942,380 + OHPLBJKB_00912 0.28 -0.4
942,381 - OHPLBJKB_00912 0.28 +1.0
942,485 + OHPLBJKB_00912 0.36 -0.7
942,540 + OHPLBJKB_00912 0.40 +0.7
942,541 - OHPLBJKB_00912 0.40 -0.5
942,613 + OHPLBJKB_00912 0.45 +0.2
942,613 + OHPLBJKB_00912 0.45 -0.7
942,680 + OHPLBJKB_00912 0.50 +1.0
942,681 - OHPLBJKB_00912 0.50 +0.5
942,902 - OHPLBJKB_00912 0.67 -0.3
942,902 - OHPLBJKB_00912 0.67 -0.1

Or see this region's nucleotide sequence