Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00905 and OHPLBJKB_00906 overlap by 4 nucleotides OHPLBJKB_00906 and OHPLBJKB_00907 overlap by 16 nucleotides OHPLBJKB_00907 and OHPLBJKB_00908 are separated by 12 nucleotides OHPLBJKB_00908 and OHPLBJKB_00909 are separated by 175 nucleotides
OHPLBJKB_00905: OHPLBJKB_00905 - hypothetical protein, at 928,866 to 929,429
_00905
OHPLBJKB_00906: OHPLBJKB_00906 - hypothetical protein, at 929,426 to 929,833
_00906
OHPLBJKB_00907: OHPLBJKB_00907 - hypothetical protein, at 929,818 to 930,141
_00907
OHPLBJKB_00908: OHPLBJKB_00908 - RecBCD enzyme subunit RecC, at 930,154 to 933,522
_00908
OHPLBJKB_00909: OHPLBJKB_00909 - Protease 3, at 933,698 to 936,586
_00909
Position (kb) 930
931
932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.311 kb on + strand, within OHPLBJKB_00905 at 929.312 kb on - strand, within OHPLBJKB_00905 at 929.312 kb on - strand, within OHPLBJKB_00905 at 929.312 kb on - strand, within OHPLBJKB_00905 at 929.312 kb on - strand, within OHPLBJKB_00905 at 929.352 kb on - strand, within OHPLBJKB_00905 at 929.354 kb on + strand, within OHPLBJKB_00905 at 929.355 kb on - strand, within OHPLBJKB_00905 at 929.370 kb on - strand, within OHPLBJKB_00905 at 929.403 kb on + strand at 929.403 kb on + strand at 929.403 kb on + strand at 929.403 kb on + strand at 929.404 kb on - strand at 929.404 kb on - strand at 929.405 kb on + strand at 929.494 kb on - strand, within OHPLBJKB_00906 at 929.496 kb on + strand, within OHPLBJKB_00906 at 929.497 kb on - strand, within OHPLBJKB_00906 at 929.646 kb on - strand, within OHPLBJKB_00906 at 929.689 kb on + strand, within OHPLBJKB_00906 at 929.690 kb on - strand, within OHPLBJKB_00906 at 929.817 kb on + strand at 929.818 kb on - strand at 929.818 kb on - strand at 929.850 kb on + strand at 929.865 kb on - strand, within OHPLBJKB_00907 at 929.865 kb on - strand, within OHPLBJKB_00907 at 929.865 kb on - strand, within OHPLBJKB_00907 at 929.927 kb on + strand, within OHPLBJKB_00907 at 929.928 kb on - strand, within OHPLBJKB_00907 at 930.153 kb on + strand at 930.154 kb on - strand at 930.210 kb on + strand at 930.874 kb on - strand, within OHPLBJKB_00908 at 930.919 kb on + strand, within OHPLBJKB_00908 at 930.980 kb on + strand, within OHPLBJKB_00908 at 931.082 kb on - strand, within OHPLBJKB_00908 at 931.457 kb on + strand, within OHPLBJKB_00908 at 931.463 kb on - strand, within OHPLBJKB_00908 at 931.802 kb on - strand, within OHPLBJKB_00908 at 931.905 kb on - strand, within OHPLBJKB_00908 at 932.494 kb on - strand, within OHPLBJKB_00908 at 932.663 kb on + strand, within OHPLBJKB_00908 at 933.529 kb on + strand at 933.555 kb on + strand at 933.555 kb on + strand at 933.556 kb on - strand at 933.560 kb on + strand at 933.561 kb on - strand at 933.590 kb on + strand at 933.590 kb on + strand at 933.591 kb on - strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.592 kb on + strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.593 kb on - strand at 933.594 kb on + strand at 933.594 kb on + strand at 933.594 kb on + strand at 933.594 kb on + strand at 933.594 kb on + strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.595 kb on - strand at 933.726 kb on + strand at 933.727 kb on - strand at 933.727 kb on - strand at 933.735 kb on + strand at 933.735 kb on + strand at 933.735 kb on + strand at 933.736 kb on - strand at 933.736 kb on - strand at 933.756 kb on + strand at 933.756 kb on + strand at 933.756 kb on + strand at 933.757 kb on - strand at 933.802 kb on + strand at 933.803 kb on - strand at 933.827 kb on + strand at 933.828 kb on - strand at 933.835 kb on + strand at 933.836 kb on - strand at 933.837 kb on + strand at 933.837 kb on + strand at 933.837 kb on + strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.838 kb on - strand at 933.889 kb on + strand at 933.890 kb on - strand at 933.945 kb on - strand at 933.962 kb on + strand at 933.962 kb on + strand at 933.962 kb on + strand at 933.963 kb on - strand at 933.963 kb on - strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.973 kb on + strand at 933.974 kb on - strand at 933.974 kb on - strand at 933.974 kb on - strand at 933.974 kb on - strand at 933.974 kb on - strand at 933.974 kb on - strand at 933.998 kb on + strand, within OHPLBJKB_00909 at 934.025 kb on + strand, within OHPLBJKB_00909 at 934.026 kb on - strand, within OHPLBJKB_00909 at 934.046 kb on - strand, within OHPLBJKB_00909 at 934.085 kb on + strand, within OHPLBJKB_00909 at 934.086 kb on - strand, within OHPLBJKB_00909 at 934.169 kb on + strand, within OHPLBJKB_00909 at 934.170 kb on - strand, within OHPLBJKB_00909 at 934.170 kb on - strand, within OHPLBJKB_00909 at 934.186 kb on + strand, within OHPLBJKB_00909 at 934.187 kb on - strand, within OHPLBJKB_00909 at 934.206 kb on + strand, within OHPLBJKB_00909 at 934.207 kb on - strand, within OHPLBJKB_00909 at 934.370 kb on + strand, within OHPLBJKB_00909 at 934.371 kb on - strand, within OHPLBJKB_00909 at 934.373 kb on + strand, within OHPLBJKB_00909 at 934.374 kb on - strand, within OHPLBJKB_00909 at 934.374 kb on - strand, within OHPLBJKB_00909 at 934.400 kb on - strand, within OHPLBJKB_00909 at 934.400 kb on - strand, within OHPLBJKB_00909 at 934.403 kb on + strand, within OHPLBJKB_00909 at 934.403 kb on + strand, within OHPLBJKB_00909 at 934.403 kb on + strand, within OHPLBJKB_00909 at 934.403 kb on + strand, within OHPLBJKB_00909 at 934.403 kb on + strand, within OHPLBJKB_00909 at 934.404 kb on - strand, within OHPLBJKB_00909 at 934.404 kb on - strand, within OHPLBJKB_00909 at 934.409 kb on - strand, within OHPLBJKB_00909 at 934.411 kb on + strand, within OHPLBJKB_00909 at 934.412 kb on - strand, within OHPLBJKB_00909
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 929,311 + OHPLBJKB_00905 0.79 +0.6 929,311 + OHPLBJKB_00905 0.79 -0.4 929,311 + OHPLBJKB_00905 0.79 -0.2 929,311 + OHPLBJKB_00905 0.79 -0.7 929,311 + OHPLBJKB_00905 0.79 +0.8 929,311 + OHPLBJKB_00905 0.79 -0.8 929,311 + OHPLBJKB_00905 0.79 -0.6 929,312 - OHPLBJKB_00905 0.79 -0.5 929,312 - OHPLBJKB_00905 0.79 +0.7 929,312 - OHPLBJKB_00905 0.79 +0.6 929,312 - OHPLBJKB_00905 0.79 +1.1 929,352 - OHPLBJKB_00905 0.86 -0.6 929,354 + OHPLBJKB_00905 0.87 +0.4 929,355 - OHPLBJKB_00905 0.87 +1.5 929,370 - OHPLBJKB_00905 0.89 +0.9 929,403 + +0.4 929,403 + -1.6 929,403 + -0.8 929,403 + +0.8 929,404 - +0.2 929,404 - +0.4 929,405 + +0.2 929,494 - OHPLBJKB_00906 0.17 -0.5 929,496 + OHPLBJKB_00906 0.17 +0.8 929,497 - OHPLBJKB_00906 0.17 -0.0 929,646 - OHPLBJKB_00906 0.54 -1.0 929,689 + OHPLBJKB_00906 0.64 +0.2 929,690 - OHPLBJKB_00906 0.65 +0.3 929,817 + +0.1 929,818 - -0.1 929,818 - +0.3 929,850 + -0.4 929,865 - OHPLBJKB_00907 0.15 +0.8 929,865 - OHPLBJKB_00907 0.15 -0.8 929,865 - OHPLBJKB_00907 0.15 -0.2 929,927 + OHPLBJKB_00907 0.34 -0.2 929,928 - OHPLBJKB_00907 0.34 -1.3 930,153 + +0.4 930,154 - -1.2 930,210 + +0.4 930,874 - OHPLBJKB_00908 0.21 +0.8 930,919 + OHPLBJKB_00908 0.23 -0.4 930,980 + OHPLBJKB_00908 0.25 -1.8 931,082 - OHPLBJKB_00908 0.28 -0.9 931,457 + OHPLBJKB_00908 0.39 -0.4 931,463 - OHPLBJKB_00908 0.39 -1.2 931,802 - OHPLBJKB_00908 0.49 -0.2 931,905 - OHPLBJKB_00908 0.52 +0.4 932,494 - OHPLBJKB_00908 0.69 -0.4 932,663 + OHPLBJKB_00908 0.74 +0.4 933,529 + +0.5 933,555 + +0.2 933,555 + +0.4 933,556 - -0.3 933,560 + -0.5 933,561 - +1.2 933,590 + +0.1 933,590 + -1.0 933,591 - -0.8 933,592 + +0.5 933,592 + +0.3 933,592 + -1.4 933,592 + +0.9 933,592 + -1.1 933,592 + -1.4 933,592 + -0.1 933,592 + +1.8 933,592 + -0.4 933,593 - -1.6 933,593 - +0.7 933,593 - +0.1 933,593 - +0.4 933,593 - -0.3 933,593 - -2.9 933,593 - -0.1 933,594 + +0.3 933,594 + -0.0 933,594 + +1.4 933,594 + -0.0 933,594 + +0.3 933,595 - -0.5 933,595 - -0.0 933,595 - -2.6 933,595 - +1.6 933,595 - -0.0 933,595 - -0.6 933,595 - -1.0 933,726 + +0.1 933,727 - +0.6 933,727 - -1.4 933,735 + +0.1 933,735 + -0.2 933,735 + +1.1 933,736 - -0.8 933,736 - +0.0 933,756 + +0.8 933,756 + +0.9 933,756 + +1.5 933,757 - -1.0 933,802 + +0.1 933,803 - -1.5 933,827 + +0.1 933,828 - +0.7 933,835 + -1.3 933,836 - +0.4 933,837 + -0.1 933,837 + -0.2 933,837 + -0.4 933,838 - +0.3 933,838 - +0.8 933,838 - +1.4 933,838 - -0.6 933,838 - -0.4 933,838 - -0.5 933,838 - -0.9 933,889 + -0.4 933,890 - +0.2 933,945 - +0.4 933,962 + +0.0 933,962 + +0.7 933,962 + -1.1 933,963 - +0.2 933,963 - -0.5 933,973 + -0.3 933,973 + -0.2 933,973 + +0.1 933,973 + -0.1 933,973 + -0.5 933,973 + -0.0 933,973 + -0.6 933,973 + +0.6 933,973 + -1.4 933,973 + +0.8 933,974 - -1.2 933,974 - -0.9 933,974 - +0.2 933,974 - -1.8 933,974 - -1.2 933,974 - +0.4 933,998 + OHPLBJKB_00909 0.10 -0.6 934,025 + OHPLBJKB_00909 0.11 -1.1 934,026 - OHPLBJKB_00909 0.11 +0.3 934,046 - OHPLBJKB_00909 0.12 -0.6 934,085 + OHPLBJKB_00909 0.13 -2.2 934,086 - OHPLBJKB_00909 0.13 -0.5 934,169 + OHPLBJKB_00909 0.16 +0.2 934,170 - OHPLBJKB_00909 0.16 +0.9 934,170 - OHPLBJKB_00909 0.16 -0.4 934,186 + OHPLBJKB_00909 0.17 +0.5 934,187 - OHPLBJKB_00909 0.17 -0.1 934,206 + OHPLBJKB_00909 0.18 -1.0 934,207 - OHPLBJKB_00909 0.18 +0.4 934,370 + OHPLBJKB_00909 0.23 -0.7 934,371 - OHPLBJKB_00909 0.23 -0.1 934,373 + OHPLBJKB_00909 0.23 -0.7 934,374 - OHPLBJKB_00909 0.23 -1.3 934,374 - OHPLBJKB_00909 0.23 +0.0 934,400 - OHPLBJKB_00909 0.24 -0.2 934,400 - OHPLBJKB_00909 0.24 +1.0 934,403 + OHPLBJKB_00909 0.24 -1.4 934,403 + OHPLBJKB_00909 0.24 -0.7 934,403 + OHPLBJKB_00909 0.24 +0.2 934,403 + OHPLBJKB_00909 0.24 +0.6 934,403 + OHPLBJKB_00909 0.24 +0.1 934,404 - OHPLBJKB_00909 0.24 -0.1 934,404 - OHPLBJKB_00909 0.24 +0.6 934,409 - OHPLBJKB_00909 0.25 -0.8 934,411 + OHPLBJKB_00909 0.25 +2.2 934,412 - OHPLBJKB_00909 0.25 +0.2
Or see this region's nucleotide sequence