Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00859 and OHPLBJKB_00860 are separated by 26 nucleotides OHPLBJKB_00860 and OHPLBJKB_00861 are separated by 79 nucleotides OHPLBJKB_00861 and OHPLBJKB_00862 are separated by 1 nucleotides OHPLBJKB_00862 and OHPLBJKB_00863 are separated by 257 nucleotides
OHPLBJKB_00859: OHPLBJKB_00859 - Surface presentation of antigens protein SpaS, at 890,363 to 890,995
_00859
OHPLBJKB_00860: OHPLBJKB_00860 - Surface presentation of antigens protein SpaS, at 891,022 to 891,384
_00860
OHPLBJKB_00861: OHPLBJKB_00861 - hypothetical protein, at 891,464 to 891,739
_00861
OHPLBJKB_00862: OHPLBJKB_00862 - hypothetical protein, at 891,741 to 892,241
_00862
OHPLBJKB_00863: OHPLBJKB_00863 - Protein PrgH, at 892,499 to 893,680
_00863
Position (kb) 891
892 Strain fitness (log2 ratio) -2
-1
0
1 at 890.620 kb on - strand, within OHPLBJKB_00859 at 891.409 kb on + strand at 891.490 kb on + strand at 891.543 kb on - strand, within OHPLBJKB_00861 at 891.705 kb on - strand, within OHPLBJKB_00861 at 891.818 kb on + strand, within OHPLBJKB_00862 at 891.936 kb on - strand, within OHPLBJKB_00862 at 891.939 kb on + strand, within OHPLBJKB_00862 at 891.939 kb on + strand, within OHPLBJKB_00862 at 891.940 kb on - strand, within OHPLBJKB_00862 at 891.940 kb on - strand, within OHPLBJKB_00862 at 891.940 kb on - strand, within OHPLBJKB_00862 at 892.241 kb on + strand at 892.350 kb on - strand at 892.366 kb on + strand at 892.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 890,620 - OHPLBJKB_00859 0.41 +1.0 891,409 + +0.2 891,490 + +0.6 891,543 - OHPLBJKB_00861 0.29 +0.1 891,705 - OHPLBJKB_00861 0.87 -1.8 891,818 + OHPLBJKB_00862 0.15 -1.1 891,936 - OHPLBJKB_00862 0.39 -1.1 891,939 + OHPLBJKB_00862 0.40 +0.6 891,939 + OHPLBJKB_00862 0.40 -0.7 891,940 - OHPLBJKB_00862 0.40 -0.0 891,940 - OHPLBJKB_00862 0.40 +0.2 891,940 - OHPLBJKB_00862 0.40 +0.5 892,241 + -0.3 892,350 - -0.3 892,366 + -0.3 892,507 + +0.6
Or see this region's nucleotide sequence