Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00676

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00675 and OHPLBJKB_00676 are separated by 696 nucleotidesOHPLBJKB_00676 and OHPLBJKB_00677 overlap by 4 nucleotidesOHPLBJKB_00677 and OHPLBJKB_00678 are separated by 151 nucleotides OHPLBJKB_00675: OHPLBJKB_00675 - Modulator of drug activity B, at 692,959 to 693,540 _00675 OHPLBJKB_00676: OHPLBJKB_00676 - Sensor protein QseC, at 694,237 to 695,586 _00676 OHPLBJKB_00677: OHPLBJKB_00677 - Transcriptional regulatory protein QseB, at 695,583 to 696,242 _00677 OHPLBJKB_00678: OHPLBJKB_00678 - Protein YgiW, at 696,394 to 696,786 _00678 Position (kb) 694 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 693.260 kb on + strand, within OHPLBJKB_00675at 693.286 kb on + strand, within OHPLBJKB_00675at 693.287 kb on - strand, within OHPLBJKB_00675at 693.287 kb on - strand, within OHPLBJKB_00675at 693.300 kb on - strand, within OHPLBJKB_00675at 693.572 kb on + strandat 693.573 kb on - strandat 693.573 kb on - strandat 693.574 kb on + strandat 693.574 kb on + strandat 693.574 kb on + strandat 693.574 kb on + strandat 693.574 kb on + strandat 693.575 kb on - strandat 693.575 kb on - strandat 693.575 kb on - strandat 693.575 kb on - strandat 693.577 kb on + strandat 693.577 kb on + strandat 693.578 kb on - strandat 693.649 kb on + strandat 693.650 kb on - strandat 693.777 kb on - strandat 693.857 kb on - strandat 693.859 kb on - strandat 693.948 kb on + strandat 693.991 kb on - strandat 693.992 kb on + strandat 694.054 kb on - strandat 694.118 kb on - strandat 694.121 kb on + strandat 694.199 kb on + strandat 694.200 kb on - strandat 694.239 kb on - strandat 694.246 kb on + strandat 694.246 kb on + strandat 694.246 kb on + strandat 694.247 kb on - strandat 694.247 kb on - strandat 694.487 kb on + strand, within OHPLBJKB_00676at 694.487 kb on + strand, within OHPLBJKB_00676at 694.488 kb on - strand, within OHPLBJKB_00676at 694.528 kb on + strand, within OHPLBJKB_00676at 694.529 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.618 kb on - strand, within OHPLBJKB_00676at 694.750 kb on + strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.839 kb on + strand, within OHPLBJKB_00676at 694.866 kb on + strand, within OHPLBJKB_00676at 694.866 kb on + strand, within OHPLBJKB_00676at 694.919 kb on - strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.999 kb on + strand, within OHPLBJKB_00676at 695.000 kb on - strand, within OHPLBJKB_00676at 695.000 kb on - strand, within OHPLBJKB_00676at 695.044 kb on + strand, within OHPLBJKB_00676at 695.045 kb on - strand, within OHPLBJKB_00676at 695.045 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.062 kb on + strand, within OHPLBJKB_00676at 695.068 kb on - strand, within OHPLBJKB_00676at 695.068 kb on - strand, within OHPLBJKB_00676at 695.165 kb on + strand, within OHPLBJKB_00676at 695.252 kb on + strand, within OHPLBJKB_00676at 695.252 kb on + strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.265 kb on + strand, within OHPLBJKB_00676at 695.266 kb on - strand, within OHPLBJKB_00676at 695.364 kb on + strand, within OHPLBJKB_00676at 695.364 kb on + strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.419 kb on - strand, within OHPLBJKB_00676at 695.595 kb on + strandat 695.595 kb on + strandat 695.595 kb on + strandat 695.595 kb on + strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.603 kb on - strandat 695.681 kb on + strand, within OHPLBJKB_00677at 695.705 kb on + strand, within OHPLBJKB_00677at 695.706 kb on - strand, within OHPLBJKB_00677at 695.707 kb on + strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.799 kb on + strand, within OHPLBJKB_00677at 695.925 kb on + strand, within OHPLBJKB_00677at 695.926 kb on - strand, within OHPLBJKB_00677at 695.943 kb on - strand, within OHPLBJKB_00677at 695.979 kb on + strand, within OHPLBJKB_00677at 695.979 kb on + strand, within OHPLBJKB_00677at 695.980 kb on - strand, within OHPLBJKB_00677at 695.980 kb on - strand, within OHPLBJKB_00677at 696.109 kb on + strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.120 kb on - strand, within OHPLBJKB_00677at 696.120 kb on - strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.122 kb on - strand, within OHPLBJKB_00677at 696.122 kb on - strand, within OHPLBJKB_00677at 696.179 kb on + strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.266 kb on - strandat 696.278 kb on + strandat 696.291 kb on - strandat 696.291 kb on - strandat 696.303 kb on - strandat 696.348 kb on + strandat 696.348 kb on + strandat 696.349 kb on - strandat 696.377 kb on + strandat 696.377 kb on + strandat 696.377 kb on + strandat 696.389 kb on + strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.539 kb on + strand, within OHPLBJKB_00678at 696.539 kb on + strand, within OHPLBJKB_00678at 696.540 kb on - strand, within OHPLBJKB_00678at 696.540 kb on - strand, within OHPLBJKB_00678

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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693,260 + OHPLBJKB_00675 0.52 -1.2
693,286 + OHPLBJKB_00675 0.56 -0.1
693,287 - OHPLBJKB_00675 0.56 -1.2
693,287 - OHPLBJKB_00675 0.56 -0.2
693,300 - OHPLBJKB_00675 0.59 +0.6
693,572 + +0.2
693,573 - -0.5
693,573 - -0.5
693,574 + -0.1
693,574 + +0.3
693,574 + -1.4
693,574 + +0.3
693,574 + -0.2
693,575 - -0.3
693,575 - +0.3
693,575 - +0.1
693,575 - +0.9
693,577 + +0.1
693,577 + -0.8
693,578 - +0.3
693,649 + -0.1
693,650 - +0.0
693,777 - -1.4
693,857 - +0.8
693,859 - +1.9
693,948 + +0.4
693,991 - +0.1
693,992 + +0.1
694,054 - -0.6
694,118 - -0.9
694,121 + -0.5
694,199 + -0.3
694,200 - -0.3
694,239 - +0.3
694,246 + -1.1
694,246 + +0.9
694,246 + +0.3
694,247 - -1.1
694,247 - -0.9
694,487 + OHPLBJKB_00676 0.19 -0.5
694,487 + OHPLBJKB_00676 0.19 -2.1
694,488 - OHPLBJKB_00676 0.19 -0.5
694,528 + OHPLBJKB_00676 0.22 -0.4
694,529 - OHPLBJKB_00676 0.22 -2.1
694,614 - OHPLBJKB_00676 0.28 -0.2
694,614 - OHPLBJKB_00676 0.28 -0.2
694,614 - OHPLBJKB_00676 0.28 -0.7
694,614 - OHPLBJKB_00676 0.28 +0.1
694,617 + OHPLBJKB_00676 0.28 +0.0
694,617 + OHPLBJKB_00676 0.28 -0.1
694,617 + OHPLBJKB_00676 0.28 -0.2
694,618 - OHPLBJKB_00676 0.28 +0.2
694,750 + OHPLBJKB_00676 0.38 -1.4
694,751 - OHPLBJKB_00676 0.38 -1.5
694,751 - OHPLBJKB_00676 0.38 +0.1
694,751 - OHPLBJKB_00676 0.38 -1.1
694,751 - OHPLBJKB_00676 0.38 -1.4
694,751 - OHPLBJKB_00676 0.38 +1.8
694,839 + OHPLBJKB_00676 0.45 -2.2
694,866 + OHPLBJKB_00676 0.47 +0.0
694,866 + OHPLBJKB_00676 0.47 -1.1
694,919 - OHPLBJKB_00676 0.51 -1.4
694,995 + OHPLBJKB_00676 0.56 +0.0
694,995 + OHPLBJKB_00676 0.56 +1.0
694,995 + OHPLBJKB_00676 0.56 +0.9
694,995 + OHPLBJKB_00676 0.56 -1.9
694,995 + OHPLBJKB_00676 0.56 -0.2
694,995 + OHPLBJKB_00676 0.56 +0.3
694,995 + OHPLBJKB_00676 0.56 -1.9
694,996 - OHPLBJKB_00676 0.56 -3.2
694,996 - OHPLBJKB_00676 0.56 -1.1
694,996 - OHPLBJKB_00676 0.56 -1.0
694,996 - OHPLBJKB_00676 0.56 +0.3
694,999 + OHPLBJKB_00676 0.56 -1.7
695,000 - OHPLBJKB_00676 0.57 -1.3
695,000 - OHPLBJKB_00676 0.57 -1.0
695,044 + OHPLBJKB_00676 0.60 -0.6
695,045 - OHPLBJKB_00676 0.60 -1.6
695,045 - OHPLBJKB_00676 0.60 -1.9
695,048 - OHPLBJKB_00676 0.60 -1.7
695,048 - OHPLBJKB_00676 0.60 -1.4
695,048 - OHPLBJKB_00676 0.60 +0.3
695,048 - OHPLBJKB_00676 0.60 -1.5
695,062 + OHPLBJKB_00676 0.61 +0.3
695,068 - OHPLBJKB_00676 0.62 +0.4
695,068 - OHPLBJKB_00676 0.62 -1.4
695,165 + OHPLBJKB_00676 0.69 -0.7
695,252 + OHPLBJKB_00676 0.75 +1.3
695,252 + OHPLBJKB_00676 0.75 -0.1
695,253 - OHPLBJKB_00676 0.75 +4.6
695,253 - OHPLBJKB_00676 0.75 -1.9
695,253 - OHPLBJKB_00676 0.75 -2.7
695,256 + OHPLBJKB_00676 0.75 -1.2
695,256 + OHPLBJKB_00676 0.75 -0.5
695,256 + OHPLBJKB_00676 0.75 +0.0
695,256 + OHPLBJKB_00676 0.75 -0.8
695,256 + OHPLBJKB_00676 0.75 +0.8
695,256 + OHPLBJKB_00676 0.75 -0.2
695,256 + OHPLBJKB_00676 0.75 -2.2
695,256 + OHPLBJKB_00676 0.75 +1.3
695,256 + OHPLBJKB_00676 0.75 -0.8
695,256 + OHPLBJKB_00676 0.75 -0.4
695,256 + OHPLBJKB_00676 0.75 +0.3
695,256 + OHPLBJKB_00676 0.75 -2.0
695,256 + OHPLBJKB_00676 0.75 +0.5
695,257 - OHPLBJKB_00676 0.76 -1.4
695,257 - OHPLBJKB_00676 0.76 +1.7
695,257 - OHPLBJKB_00676 0.76 -0.9
695,257 - OHPLBJKB_00676 0.76 -2.4
695,257 - OHPLBJKB_00676 0.76 -1.3
695,257 - OHPLBJKB_00676 0.76 -0.4
695,257 - OHPLBJKB_00676 0.76 -2.0
695,257 - OHPLBJKB_00676 0.76 -0.8
695,257 - OHPLBJKB_00676 0.76 -2.2
695,257 - OHPLBJKB_00676 0.76 -0.9
695,257 - OHPLBJKB_00676 0.76 +0.8
695,257 - OHPLBJKB_00676 0.76 +0.2
695,257 - OHPLBJKB_00676 0.76 -1.7
695,257 - OHPLBJKB_00676 0.76 -1.1
695,257 - OHPLBJKB_00676 0.76 -1.6
695,265 + OHPLBJKB_00676 0.76 -0.4
695,266 - OHPLBJKB_00676 0.76 -1.2
695,364 + OHPLBJKB_00676 0.83 -1.2
695,364 + OHPLBJKB_00676 0.83 -1.5
695,365 - OHPLBJKB_00676 0.84 -0.6
695,365 - OHPLBJKB_00676 0.84 -2.4
695,365 - OHPLBJKB_00676 0.84 -1.4
695,419 - OHPLBJKB_00676 0.88 -2.7
695,595 + -0.7
695,595 + -1.5
695,595 + -2.6
695,595 + -0.4
695,596 - +0.2
695,596 - -2.3
695,596 - -0.7
695,596 - -0.9
695,603 - -1.2
695,681 + OHPLBJKB_00677 0.15 -0.5
695,705 + OHPLBJKB_00677 0.18 -0.0
695,706 - OHPLBJKB_00677 0.19 +1.2
695,707 + OHPLBJKB_00677 0.19 -0.4
695,708 - OHPLBJKB_00677 0.19 -1.7
695,708 - OHPLBJKB_00677 0.19 -0.6
695,708 - OHPLBJKB_00677 0.19 +0.3
695,708 - OHPLBJKB_00677 0.19 +0.7
695,799 + OHPLBJKB_00677 0.33 +0.2
695,925 + OHPLBJKB_00677 0.52 -0.3
695,926 - OHPLBJKB_00677 0.52 -1.2
695,943 - OHPLBJKB_00677 0.55 +1.2
695,979 + OHPLBJKB_00677 0.60 -0.2
695,979 + OHPLBJKB_00677 0.60 -0.2
695,980 - OHPLBJKB_00677 0.60 -0.2
695,980 - OHPLBJKB_00677 0.60 +0.5
696,109 + OHPLBJKB_00677 0.80 +0.3
696,110 - OHPLBJKB_00677 0.80 +0.0
696,110 - OHPLBJKB_00677 0.80 -0.3
696,110 - OHPLBJKB_00677 0.80 +1.3
696,110 - OHPLBJKB_00677 0.80 -0.7
696,120 - OHPLBJKB_00677 0.81 -1.8
696,120 - OHPLBJKB_00677 0.81 +0.2
696,121 + OHPLBJKB_00677 0.82 -1.0
696,121 + OHPLBJKB_00677 0.82 +0.3
696,121 + OHPLBJKB_00677 0.82 -0.8
696,122 - OHPLBJKB_00677 0.82 +0.1
696,122 - OHPLBJKB_00677 0.82 +0.5
696,179 + -1.0
696,180 - -0.5
696,180 - -0.2
696,180 - +0.6
696,180 - -0.3
696,266 - +0.8
696,278 + -0.0
696,291 - -1.2
696,291 - -0.2
696,303 - -0.2
696,348 + -0.5
696,348 + -0.1
696,349 - -0.4
696,377 + -0.2
696,377 + +0.3
696,377 + -0.8
696,389 + -0.2
696,390 - -0.4
696,390 - +0.9
696,390 - +0.0
696,390 - +0.2
696,390 - -0.3
696,539 + OHPLBJKB_00678 0.37 -0.3
696,539 + OHPLBJKB_00678 0.37 +0.1
696,540 - OHPLBJKB_00678 0.37 -1.0
696,540 - OHPLBJKB_00678 0.37 -0.7

Or see this region's nucleotide sequence