Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00589 and OHPLBJKB_00590 are separated by 27 nucleotides OHPLBJKB_00590 and OHPLBJKB_00591 are separated by 60 nucleotides OHPLBJKB_00591 and OHPLBJKB_00592 are separated by 22 nucleotides
OHPLBJKB_00589: OHPLBJKB_00589 - putative serine transporter, at 604,053 to 605,384
_00589
OHPLBJKB_00590: OHPLBJKB_00590 - hypothetical protein, at 605,412 to 606,722
_00590
OHPLBJKB_00591: OHPLBJKB_00591 - hypothetical protein, at 606,783 to 606,947
_00591
OHPLBJKB_00592: OHPLBJKB_00592 - Pirin-like protein YhaK, at 606,970 to 607,671
_00592
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 604.440 kb on + strand, within OHPLBJKB_00589 at 604.441 kb on - strand, within OHPLBJKB_00589 at 604.473 kb on + strand, within OHPLBJKB_00589 at 604.473 kb on + strand, within OHPLBJKB_00589 at 604.474 kb on - strand, within OHPLBJKB_00589 at 604.481 kb on + strand, within OHPLBJKB_00589 at 604.481 kb on + strand, within OHPLBJKB_00589 at 604.482 kb on - strand, within OHPLBJKB_00589 at 604.524 kb on + strand, within OHPLBJKB_00589 at 604.535 kb on - strand, within OHPLBJKB_00589 at 604.621 kb on + strand, within OHPLBJKB_00589 at 604.668 kb on + strand, within OHPLBJKB_00589 at 604.668 kb on + strand, within OHPLBJKB_00589 at 604.668 kb on + strand, within OHPLBJKB_00589 at 604.669 kb on - strand, within OHPLBJKB_00589 at 604.669 kb on - strand, within OHPLBJKB_00589 at 604.669 kb on - strand, within OHPLBJKB_00589 at 604.670 kb on + strand, within OHPLBJKB_00589 at 604.671 kb on - strand, within OHPLBJKB_00589 at 604.671 kb on - strand, within OHPLBJKB_00589 at 604.718 kb on + strand, within OHPLBJKB_00589 at 604.719 kb on - strand, within OHPLBJKB_00589 at 604.719 kb on - strand, within OHPLBJKB_00589 at 604.721 kb on + strand, within OHPLBJKB_00589 at 604.722 kb on - strand, within OHPLBJKB_00589 at 604.734 kb on - strand, within OHPLBJKB_00589 at 604.765 kb on + strand, within OHPLBJKB_00589 at 604.823 kb on + strand, within OHPLBJKB_00589 at 604.824 kb on - strand, within OHPLBJKB_00589 at 604.844 kb on + strand, within OHPLBJKB_00589 at 604.932 kb on + strand, within OHPLBJKB_00589 at 604.933 kb on - strand, within OHPLBJKB_00589 at 604.974 kb on - strand, within OHPLBJKB_00589 at 605.058 kb on + strand, within OHPLBJKB_00589 at 605.058 kb on + strand, within OHPLBJKB_00589 at 605.059 kb on - strand, within OHPLBJKB_00589 at 605.059 kb on - strand, within OHPLBJKB_00589 at 605.092 kb on + strand, within OHPLBJKB_00589 at 605.229 kb on - strand, within OHPLBJKB_00589 at 605.234 kb on + strand, within OHPLBJKB_00589 at 605.235 kb on - strand, within OHPLBJKB_00589 at 605.254 kb on + strand at 605.254 kb on + strand at 605.254 kb on + strand at 605.291 kb on - strand at 605.307 kb on + strand at 605.307 kb on + strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.325 kb on + strand at 605.428 kb on + strand at 605.492 kb on + strand at 605.492 kb on + strand at 605.493 kb on - strand at 605.493 kb on - strand at 605.493 kb on - strand at 605.493 kb on - strand at 605.564 kb on - strand, within OHPLBJKB_00590 at 605.564 kb on - strand, within OHPLBJKB_00590 at 605.666 kb on - strand, within OHPLBJKB_00590 at 605.874 kb on - strand, within OHPLBJKB_00590 at 605.874 kb on - strand, within OHPLBJKB_00590 at 606.020 kb on + strand, within OHPLBJKB_00590 at 606.075 kb on - strand, within OHPLBJKB_00590 at 606.089 kb on + strand, within OHPLBJKB_00590 at 606.090 kb on - strand, within OHPLBJKB_00590 at 606.218 kb on + strand, within OHPLBJKB_00590 at 606.342 kb on + strand, within OHPLBJKB_00590 at 606.342 kb on + strand, within OHPLBJKB_00590 at 606.342 kb on + strand, within OHPLBJKB_00590 at 606.343 kb on - strand, within OHPLBJKB_00590 at 606.471 kb on - strand, within OHPLBJKB_00590 at 606.568 kb on + strand, within OHPLBJKB_00590 at 606.720 kb on + strand at 606.791 kb on + strand at 606.807 kb on + strand, within OHPLBJKB_00591 at 606.863 kb on - strand, within OHPLBJKB_00591 at 606.971 kb on + strand at 606.971 kb on + strand at 606.972 kb on - strand at 607.023 kb on + strand at 607.023 kb on + strand at 607.023 kb on + strand at 607.023 kb on + strand at 607.024 kb on - strand at 607.246 kb on + strand, within OHPLBJKB_00592 at 607.266 kb on + strand, within OHPLBJKB_00592 at 607.370 kb on + strand, within OHPLBJKB_00592 at 607.371 kb on - strand, within OHPLBJKB_00592 at 607.478 kb on - strand, within OHPLBJKB_00592 at 607.563 kb on - strand, within OHPLBJKB_00592 at 607.586 kb on + strand, within OHPLBJKB_00592 at 607.586 kb on + strand, within OHPLBJKB_00592 at 607.586 kb on + strand, within OHPLBJKB_00592 at 607.587 kb on - strand, within OHPLBJKB_00592 at 607.587 kb on - strand, within OHPLBJKB_00592 at 607.587 kb on - strand, within OHPLBJKB_00592 at 607.587 kb on - strand, within OHPLBJKB_00592 at 607.587 kb on - strand, within OHPLBJKB_00592 at 607.605 kb on + strand at 607.606 kb on - strand at 607.606 kb on - strand at 607.628 kb on + strand at 607.665 kb on + strand at 607.665 kb on + strand at 607.665 kb on + strand at 607.666 kb on - strand at 607.672 kb on - strand at 607.672 kb on - strand at 607.689 kb on + strand at 607.699 kb on + strand at 607.700 kb on - strand at 607.705 kb on - strand at 607.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 604,440 + OHPLBJKB_00589 0.29 -0.4 604,441 - OHPLBJKB_00589 0.29 -2.0 604,473 + OHPLBJKB_00589 0.32 -0.3 604,473 + OHPLBJKB_00589 0.32 -0.1 604,474 - OHPLBJKB_00589 0.32 -0.1 604,481 + OHPLBJKB_00589 0.32 -0.5 604,481 + OHPLBJKB_00589 0.32 +0.4 604,482 - OHPLBJKB_00589 0.32 +0.2 604,524 + OHPLBJKB_00589 0.35 -0.1 604,535 - OHPLBJKB_00589 0.36 +0.3 604,621 + OHPLBJKB_00589 0.43 +0.5 604,668 + OHPLBJKB_00589 0.46 -0.1 604,668 + OHPLBJKB_00589 0.46 +1.1 604,668 + OHPLBJKB_00589 0.46 -0.9 604,669 - OHPLBJKB_00589 0.46 -1.0 604,669 - OHPLBJKB_00589 0.46 +0.2 604,669 - OHPLBJKB_00589 0.46 -0.8 604,670 + OHPLBJKB_00589 0.46 -0.0 604,671 - OHPLBJKB_00589 0.46 +0.0 604,671 - OHPLBJKB_00589 0.46 +0.8 604,718 + OHPLBJKB_00589 0.50 +0.2 604,719 - OHPLBJKB_00589 0.50 -0.1 604,719 - OHPLBJKB_00589 0.50 -0.6 604,721 + OHPLBJKB_00589 0.50 -0.0 604,722 - OHPLBJKB_00589 0.50 -1.3 604,734 - OHPLBJKB_00589 0.51 -0.6 604,765 + OHPLBJKB_00589 0.53 +0.5 604,823 + OHPLBJKB_00589 0.58 +0.8 604,824 - OHPLBJKB_00589 0.58 +0.1 604,844 + OHPLBJKB_00589 0.59 -0.0 604,932 + OHPLBJKB_00589 0.66 +0.6 604,933 - OHPLBJKB_00589 0.66 -0.5 604,974 - OHPLBJKB_00589 0.69 +0.8 605,058 + OHPLBJKB_00589 0.75 -0.2 605,058 + OHPLBJKB_00589 0.75 +1.4 605,059 - OHPLBJKB_00589 0.76 +1.0 605,059 - OHPLBJKB_00589 0.76 -0.9 605,092 + OHPLBJKB_00589 0.78 -0.2 605,229 - OHPLBJKB_00589 0.88 -0.1 605,234 + OHPLBJKB_00589 0.89 +0.7 605,235 - OHPLBJKB_00589 0.89 +0.9 605,254 + +0.4 605,254 + +0.0 605,254 + -0.2 605,291 - +0.0 605,307 + +0.0 605,307 + +0.5 605,308 - -1.9 605,308 - -1.2 605,308 - -1.0 605,308 - +0.3 605,325 + +0.8 605,428 + -0.1 605,492 + +0.0 605,492 + +0.6 605,493 - +0.2 605,493 - +1.1 605,493 - +0.7 605,493 - +0.4 605,564 - OHPLBJKB_00590 0.12 -0.7 605,564 - OHPLBJKB_00590 0.12 +0.9 605,666 - OHPLBJKB_00590 0.19 +1.0 605,874 - OHPLBJKB_00590 0.35 +1.1 605,874 - OHPLBJKB_00590 0.35 -1.6 606,020 + OHPLBJKB_00590 0.46 +0.0 606,075 - OHPLBJKB_00590 0.51 -1.7 606,089 + OHPLBJKB_00590 0.52 +0.1 606,090 - OHPLBJKB_00590 0.52 -0.5 606,218 + OHPLBJKB_00590 0.61 +0.3 606,342 + OHPLBJKB_00590 0.71 -0.3 606,342 + OHPLBJKB_00590 0.71 -0.8 606,342 + OHPLBJKB_00590 0.71 -0.0 606,343 - OHPLBJKB_00590 0.71 +6.5 606,471 - OHPLBJKB_00590 0.81 -0.6 606,568 + OHPLBJKB_00590 0.88 +0.5 606,720 + -0.2 606,791 + -1.2 606,807 + OHPLBJKB_00591 0.15 +1.2 606,863 - OHPLBJKB_00591 0.48 -2.9 606,971 + -0.2 606,971 + -1.5 606,972 - -0.3 607,023 + -0.1 607,023 + -1.1 607,023 + +1.2 607,023 + +1.8 607,024 - +1.2 607,246 + OHPLBJKB_00592 0.39 +0.2 607,266 + OHPLBJKB_00592 0.42 -0.4 607,370 + OHPLBJKB_00592 0.57 -0.0 607,371 - OHPLBJKB_00592 0.57 +0.5 607,478 - OHPLBJKB_00592 0.72 -1.0 607,563 - OHPLBJKB_00592 0.84 +0.2 607,586 + OHPLBJKB_00592 0.88 -0.1 607,586 + OHPLBJKB_00592 0.88 -2.2 607,586 + OHPLBJKB_00592 0.88 +1.4 607,587 - OHPLBJKB_00592 0.88 +0.9 607,587 - OHPLBJKB_00592 0.88 -0.8 607,587 - OHPLBJKB_00592 0.88 +1.2 607,587 - OHPLBJKB_00592 0.88 +0.2 607,587 - OHPLBJKB_00592 0.88 +0.4 607,605 + -0.1 607,606 - -1.2 607,606 - -0.2 607,628 + -0.9 607,665 + -0.6 607,665 + +0.7 607,665 + +0.7 607,666 - +1.4 607,672 - +0.2 607,672 - +0.6 607,689 + -0.8 607,699 + +0.2 607,700 - +0.0 607,705 - -0.2 607,719 + -0.8
Or see this region's nucleotide sequence