Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00505 and OHPLBJKB_00506 are separated by 7 nucleotides OHPLBJKB_00506 and OHPLBJKB_00507 are separated by 4 nucleotides OHPLBJKB_00507 and OHPLBJKB_00508 are separated by 18 nucleotides OHPLBJKB_00508 and OHPLBJKB_00509 overlap by 1 nucleotides
OHPLBJKB_00505: OHPLBJKB_00505 - putative phospholipid import ATP-binding protein MlaF, at 519,909 to 520,718
_00505
OHPLBJKB_00506: OHPLBJKB_00506 - putative phospholipid ABC transporter permease protein MlaE, at 520,726 to 521,508
_00506
OHPLBJKB_00507: OHPLBJKB_00507 - putative phospholipid ABC transporter-binding protein MlaD, at 521,513 to 522,064
_00507
OHPLBJKB_00508: OHPLBJKB_00508 - putative phospholipid-binding protein MlaC, at 522,083 to 522,718
_00508
OHPLBJKB_00509: OHPLBJKB_00509 - putative phospholipid ABC transporter-binding protein MlaB, at 522,718 to 523,011
_00509
Position (kb) 521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 520.535 kb on - strand, within OHPLBJKB_00505 at 520.538 kb on + strand, within OHPLBJKB_00505 at 520.539 kb on - strand, within OHPLBJKB_00505 at 520.539 kb on - strand, within OHPLBJKB_00505 at 520.627 kb on + strand, within OHPLBJKB_00505 at 520.628 kb on - strand, within OHPLBJKB_00505 at 520.628 kb on - strand, within OHPLBJKB_00505 at 520.648 kb on + strand at 520.716 kb on + strand at 520.734 kb on - strand at 520.734 kb on - strand at 520.758 kb on + strand at 520.759 kb on - strand at 520.759 kb on - strand at 520.759 kb on - strand at 520.800 kb on - strand at 520.870 kb on + strand, within OHPLBJKB_00506 at 520.870 kb on + strand, within OHPLBJKB_00506 at 520.871 kb on - strand, within OHPLBJKB_00506 at 520.899 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.966 kb on + strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.967 kb on - strand, within OHPLBJKB_00506 at 520.969 kb on - strand, within OHPLBJKB_00506 at 520.969 kb on - strand, within OHPLBJKB_00506 at 520.990 kb on - strand, within OHPLBJKB_00506 at 520.990 kb on - strand, within OHPLBJKB_00506 at 521.010 kb on - strand, within OHPLBJKB_00506 at 521.101 kb on - strand, within OHPLBJKB_00506 at 521.119 kb on - strand, within OHPLBJKB_00506 at 521.206 kb on - strand, within OHPLBJKB_00506 at 521.206 kb on - strand, within OHPLBJKB_00506 at 521.337 kb on + strand, within OHPLBJKB_00506 at 521.337 kb on + strand, within OHPLBJKB_00506 at 521.382 kb on + strand, within OHPLBJKB_00506 at 521.545 kb on + strand at 521.545 kb on + strand at 521.546 kb on - strand at 521.554 kb on - strand at 521.613 kb on + strand, within OHPLBJKB_00507 at 521.613 kb on + strand, within OHPLBJKB_00507 at 521.613 kb on + strand, within OHPLBJKB_00507 at 521.613 kb on + strand, within OHPLBJKB_00507 at 521.614 kb on - strand, within OHPLBJKB_00507 at 521.614 kb on - strand, within OHPLBJKB_00507 at 521.614 kb on - strand, within OHPLBJKB_00507 at 521.614 kb on - strand, within OHPLBJKB_00507 at 521.614 kb on - strand, within OHPLBJKB_00507 at 521.618 kb on - strand, within OHPLBJKB_00507 at 521.618 kb on - strand, within OHPLBJKB_00507 at 521.618 kb on - strand, within OHPLBJKB_00507 at 521.631 kb on - strand, within OHPLBJKB_00507 at 521.631 kb on - strand, within OHPLBJKB_00507 at 521.689 kb on + strand, within OHPLBJKB_00507 at 521.690 kb on - strand, within OHPLBJKB_00507 at 521.722 kb on + strand, within OHPLBJKB_00507 at 521.723 kb on - strand, within OHPLBJKB_00507 at 521.725 kb on + strand, within OHPLBJKB_00507 at 521.725 kb on + strand, within OHPLBJKB_00507 at 521.725 kb on + strand, within OHPLBJKB_00507 at 521.726 kb on - strand, within OHPLBJKB_00507 at 521.726 kb on - strand, within OHPLBJKB_00507 at 521.744 kb on + strand, within OHPLBJKB_00507 at 521.745 kb on - strand, within OHPLBJKB_00507 at 521.745 kb on - strand, within OHPLBJKB_00507 at 521.780 kb on + strand, within OHPLBJKB_00507 at 521.780 kb on + strand, within OHPLBJKB_00507 at 521.780 kb on + strand, within OHPLBJKB_00507 at 521.780 kb on + strand, within OHPLBJKB_00507 at 521.781 kb on - strand, within OHPLBJKB_00507 at 521.781 kb on - strand, within OHPLBJKB_00507 at 521.781 kb on - strand, within OHPLBJKB_00507 at 521.781 kb on - strand, within OHPLBJKB_00507 at 521.782 kb on + strand, within OHPLBJKB_00507 at 521.818 kb on + strand, within OHPLBJKB_00507 at 521.819 kb on - strand, within OHPLBJKB_00507 at 521.819 kb on - strand, within OHPLBJKB_00507 at 521.819 kb on - strand, within OHPLBJKB_00507 at 521.844 kb on - strand, within OHPLBJKB_00507 at 521.844 kb on - strand, within OHPLBJKB_00507 at 521.844 kb on - strand, within OHPLBJKB_00507 at 521.908 kb on + strand, within OHPLBJKB_00507 at 521.909 kb on - strand, within OHPLBJKB_00507 at 521.923 kb on + strand, within OHPLBJKB_00507 at 521.923 kb on + strand, within OHPLBJKB_00507 at 521.924 kb on - strand, within OHPLBJKB_00507 at 521.924 kb on - strand, within OHPLBJKB_00507 at 521.924 kb on - strand, within OHPLBJKB_00507 at 521.924 kb on - strand, within OHPLBJKB_00507 at 521.924 kb on - strand, within OHPLBJKB_00507 at 521.967 kb on - strand, within OHPLBJKB_00507 at 521.975 kb on - strand, within OHPLBJKB_00507 at 521.989 kb on + strand, within OHPLBJKB_00507 at 521.989 kb on + strand, within OHPLBJKB_00507 at 521.995 kb on + strand, within OHPLBJKB_00507 at 522.025 kb on + strand at 522.029 kb on - strand at 522.053 kb on - strand at 522.063 kb on - strand at 522.088 kb on + strand at 522.096 kb on + strand at 522.097 kb on - strand at 522.165 kb on - strand, within OHPLBJKB_00508 at 522.165 kb on - strand, within OHPLBJKB_00508 at 522.245 kb on + strand, within OHPLBJKB_00508 at 522.254 kb on - strand, within OHPLBJKB_00508 at 522.281 kb on + strand, within OHPLBJKB_00508 at 522.281 kb on + strand, within OHPLBJKB_00508 at 522.282 kb on - strand, within OHPLBJKB_00508 at 522.282 kb on - strand, within OHPLBJKB_00508 at 522.282 kb on - strand, within OHPLBJKB_00508 at 522.285 kb on + strand, within OHPLBJKB_00508 at 522.285 kb on + strand, within OHPLBJKB_00508 at 522.286 kb on - strand, within OHPLBJKB_00508 at 522.286 kb on - strand, within OHPLBJKB_00508 at 522.286 kb on - strand, within OHPLBJKB_00508 at 522.286 kb on - strand, within OHPLBJKB_00508 at 522.296 kb on + strand, within OHPLBJKB_00508 at 522.326 kb on + strand, within OHPLBJKB_00508 at 522.326 kb on + strand, within OHPLBJKB_00508 at 522.326 kb on + strand, within OHPLBJKB_00508 at 522.327 kb on - strand, within OHPLBJKB_00508 at 522.327 kb on - strand, within OHPLBJKB_00508 at 522.327 kb on - strand, within OHPLBJKB_00508 at 522.327 kb on - strand, within OHPLBJKB_00508 at 522.359 kb on + strand, within OHPLBJKB_00508 at 522.395 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.416 kb on + strand, within OHPLBJKB_00508 at 522.417 kb on - strand, within OHPLBJKB_00508 at 522.478 kb on + strand, within OHPLBJKB_00508 at 522.572 kb on + strand, within OHPLBJKB_00508 at 522.573 kb on - strand, within OHPLBJKB_00508 at 522.599 kb on - strand, within OHPLBJKB_00508 at 522.717 kb on - strand at 522.835 kb on - strand, within OHPLBJKB_00509 at 522.850 kb on - strand, within OHPLBJKB_00509 at 522.948 kb on - strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.961 kb on + strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.962 kb on - strand, within OHPLBJKB_00509 at 522.964 kb on - strand, within OHPLBJKB_00509
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 520,535 - OHPLBJKB_00505 0.77 -0.8 520,538 + OHPLBJKB_00505 0.78 +0.2 520,539 - OHPLBJKB_00505 0.78 -1.1 520,539 - OHPLBJKB_00505 0.78 +0.2 520,627 + OHPLBJKB_00505 0.89 -0.4 520,628 - OHPLBJKB_00505 0.89 -1.7 520,628 - OHPLBJKB_00505 0.89 -1.2 520,648 + -3.5 520,716 + -0.2 520,734 - -1.3 520,734 - +0.6 520,758 + -1.1 520,759 - -0.8 520,759 - +0.1 520,759 - -2.2 520,800 - -0.2 520,870 + OHPLBJKB_00506 0.18 -1.2 520,870 + OHPLBJKB_00506 0.18 -0.0 520,871 - OHPLBJKB_00506 0.19 -0.7 520,899 + OHPLBJKB_00506 0.22 -1.0 520,966 + OHPLBJKB_00506 0.31 -0.8 520,966 + OHPLBJKB_00506 0.31 -1.6 520,966 + OHPLBJKB_00506 0.31 +0.3 520,966 + OHPLBJKB_00506 0.31 +0.0 520,966 + OHPLBJKB_00506 0.31 -1.4 520,966 + OHPLBJKB_00506 0.31 -0.8 520,966 + OHPLBJKB_00506 0.31 +0.0 520,966 + OHPLBJKB_00506 0.31 -0.2 520,966 + OHPLBJKB_00506 0.31 -1.9 520,967 - OHPLBJKB_00506 0.31 -2.3 520,967 - OHPLBJKB_00506 0.31 -0.4 520,967 - OHPLBJKB_00506 0.31 -0.6 520,967 - OHPLBJKB_00506 0.31 -2.2 520,967 - OHPLBJKB_00506 0.31 -1.2 520,967 - OHPLBJKB_00506 0.31 -0.5 520,967 - OHPLBJKB_00506 0.31 -1.2 520,967 - OHPLBJKB_00506 0.31 -1.3 520,967 - OHPLBJKB_00506 0.31 -1.0 520,967 - OHPLBJKB_00506 0.31 -2.6 520,967 - OHPLBJKB_00506 0.31 +0.8 520,967 - OHPLBJKB_00506 0.31 -1.0 520,967 - OHPLBJKB_00506 0.31 -0.9 520,967 - OHPLBJKB_00506 0.31 -1.1 520,967 - OHPLBJKB_00506 0.31 -0.5 520,967 - OHPLBJKB_00506 0.31 +0.0 520,969 - OHPLBJKB_00506 0.31 -1.5 520,969 - OHPLBJKB_00506 0.31 -1.7 520,990 - OHPLBJKB_00506 0.34 -1.4 520,990 - OHPLBJKB_00506 0.34 -1.0 521,010 - OHPLBJKB_00506 0.36 -2.6 521,101 - OHPLBJKB_00506 0.48 -2.2 521,119 - OHPLBJKB_00506 0.50 -1.6 521,206 - OHPLBJKB_00506 0.61 -1.4 521,206 - OHPLBJKB_00506 0.61 +4.5 521,337 + OHPLBJKB_00506 0.78 -0.6 521,337 + OHPLBJKB_00506 0.78 +0.0 521,382 + OHPLBJKB_00506 0.84 -2.1 521,545 + -2.1 521,545 + -0.8 521,546 - -1.1 521,554 - -2.2 521,613 + OHPLBJKB_00507 0.18 -2.0 521,613 + OHPLBJKB_00507 0.18 -0.7 521,613 + OHPLBJKB_00507 0.18 -1.5 521,613 + OHPLBJKB_00507 0.18 -0.8 521,614 - OHPLBJKB_00507 0.18 -1.4 521,614 - OHPLBJKB_00507 0.18 -1.5 521,614 - OHPLBJKB_00507 0.18 -0.7 521,614 - OHPLBJKB_00507 0.18 -1.4 521,614 - OHPLBJKB_00507 0.18 -1.5 521,618 - OHPLBJKB_00507 0.19 -0.3 521,618 - OHPLBJKB_00507 0.19 -2.6 521,618 - OHPLBJKB_00507 0.19 -1.2 521,631 - OHPLBJKB_00507 0.21 -0.5 521,631 - OHPLBJKB_00507 0.21 -1.0 521,689 + OHPLBJKB_00507 0.32 +0.4 521,690 - OHPLBJKB_00507 0.32 -0.6 521,722 + OHPLBJKB_00507 0.38 -1.8 521,723 - OHPLBJKB_00507 0.38 -1.8 521,725 + OHPLBJKB_00507 0.38 -0.6 521,725 + OHPLBJKB_00507 0.38 -0.2 521,725 + OHPLBJKB_00507 0.38 -1.1 521,726 - OHPLBJKB_00507 0.39 -0.8 521,726 - OHPLBJKB_00507 0.39 -1.1 521,744 + OHPLBJKB_00507 0.42 -0.8 521,745 - OHPLBJKB_00507 0.42 -1.0 521,745 - OHPLBJKB_00507 0.42 -1.8 521,780 + OHPLBJKB_00507 0.48 -0.5 521,780 + OHPLBJKB_00507 0.48 -0.2 521,780 + OHPLBJKB_00507 0.48 -0.5 521,780 + OHPLBJKB_00507 0.48 -1.6 521,781 - OHPLBJKB_00507 0.49 -0.6 521,781 - OHPLBJKB_00507 0.49 -0.6 521,781 - OHPLBJKB_00507 0.49 -1.0 521,781 - OHPLBJKB_00507 0.49 +0.3 521,782 + OHPLBJKB_00507 0.49 -1.4 521,818 + OHPLBJKB_00507 0.55 -1.6 521,819 - OHPLBJKB_00507 0.55 -1.3 521,819 - OHPLBJKB_00507 0.55 -1.6 521,819 - OHPLBJKB_00507 0.55 -0.6 521,844 - OHPLBJKB_00507 0.60 +0.2 521,844 - OHPLBJKB_00507 0.60 -0.1 521,844 - OHPLBJKB_00507 0.60 -0.1 521,908 + OHPLBJKB_00507 0.72 -0.8 521,909 - OHPLBJKB_00507 0.72 -1.2 521,923 + OHPLBJKB_00507 0.74 -0.6 521,923 + OHPLBJKB_00507 0.74 -2.7 521,924 - OHPLBJKB_00507 0.74 +0.3 521,924 - OHPLBJKB_00507 0.74 -0.8 521,924 - OHPLBJKB_00507 0.74 -2.2 521,924 - OHPLBJKB_00507 0.74 -0.5 521,924 - OHPLBJKB_00507 0.74 +0.1 521,967 - OHPLBJKB_00507 0.82 -3.3 521,975 - OHPLBJKB_00507 0.84 -0.4 521,989 + OHPLBJKB_00507 0.86 -0.0 521,989 + OHPLBJKB_00507 0.86 -0.8 521,995 + OHPLBJKB_00507 0.87 -0.7 522,025 + +0.4 522,029 - -0.3 522,053 - -0.4 522,063 - -0.5 522,088 + -1.7 522,096 + +0.0 522,097 - -0.9 522,165 - OHPLBJKB_00508 0.13 -2.0 522,165 - OHPLBJKB_00508 0.13 -1.0 522,245 + OHPLBJKB_00508 0.25 -1.1 522,254 - OHPLBJKB_00508 0.27 +1.2 522,281 + OHPLBJKB_00508 0.31 -0.8 522,281 + OHPLBJKB_00508 0.31 -0.8 522,282 - OHPLBJKB_00508 0.31 -0.9 522,282 - OHPLBJKB_00508 0.31 -1.0 522,282 - OHPLBJKB_00508 0.31 -1.5 522,285 + OHPLBJKB_00508 0.32 -0.2 522,285 + OHPLBJKB_00508 0.32 -0.6 522,286 - OHPLBJKB_00508 0.32 -1.0 522,286 - OHPLBJKB_00508 0.32 -2.2 522,286 - OHPLBJKB_00508 0.32 -1.4 522,286 - OHPLBJKB_00508 0.32 -0.4 522,296 + OHPLBJKB_00508 0.33 -1.0 522,326 + OHPLBJKB_00508 0.38 -0.6 522,326 + OHPLBJKB_00508 0.38 -3.3 522,326 + OHPLBJKB_00508 0.38 +0.0 522,327 - OHPLBJKB_00508 0.38 -0.5 522,327 - OHPLBJKB_00508 0.38 -1.5 522,327 - OHPLBJKB_00508 0.38 +4.8 522,327 - OHPLBJKB_00508 0.38 -0.7 522,359 + OHPLBJKB_00508 0.43 +0.0 522,395 + OHPLBJKB_00508 0.49 -1.5 522,416 + OHPLBJKB_00508 0.52 -0.2 522,416 + OHPLBJKB_00508 0.52 +0.5 522,416 + OHPLBJKB_00508 0.52 -0.7 522,416 + OHPLBJKB_00508 0.52 -1.5 522,416 + OHPLBJKB_00508 0.52 -0.7 522,416 + OHPLBJKB_00508 0.52 -0.4 522,416 + OHPLBJKB_00508 0.52 -1.0 522,416 + OHPLBJKB_00508 0.52 -0.7 522,417 - OHPLBJKB_00508 0.53 -0.6 522,478 + OHPLBJKB_00508 0.62 -0.8 522,572 + OHPLBJKB_00508 0.77 -0.4 522,573 - OHPLBJKB_00508 0.77 -0.2 522,599 - OHPLBJKB_00508 0.81 -1.0 522,717 - -0.3 522,835 - OHPLBJKB_00509 0.40 +0.6 522,850 - OHPLBJKB_00509 0.45 -0.9 522,948 - OHPLBJKB_00509 0.78 -0.6 522,961 + OHPLBJKB_00509 0.83 -2.2 522,961 + OHPLBJKB_00509 0.83 -0.6 522,961 + OHPLBJKB_00509 0.83 +0.0 522,961 + OHPLBJKB_00509 0.83 +0.4 522,961 + OHPLBJKB_00509 0.83 -2.0 522,961 + OHPLBJKB_00509 0.83 -0.5 522,962 - OHPLBJKB_00509 0.83 -1.8 522,962 - OHPLBJKB_00509 0.83 -0.7 522,962 - OHPLBJKB_00509 0.83 +0.2 522,962 - OHPLBJKB_00509 0.83 +0.2 522,962 - OHPLBJKB_00509 0.83 -0.7 522,962 - OHPLBJKB_00509 0.83 -1.1 522,962 - OHPLBJKB_00509 0.83 -0.8 522,962 - OHPLBJKB_00509 0.83 -1.3 522,962 - OHPLBJKB_00509 0.83 -1.2 522,964 - OHPLBJKB_00509 0.84 -0.5
Or see this region's nucleotide sequence