Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00353

Experiment: vio MOI10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00352 and OHPLBJKB_00353 are separated by 9 nucleotidesOHPLBJKB_00353 and OHPLBJKB_00354 are separated by 94 nucleotidesOHPLBJKB_00354 and OHPLBJKB_00355 are separated by 48 nucleotides OHPLBJKB_00352: OHPLBJKB_00352 - Glutathione-regulated potassium-efflux system protein KefC, at 385,951 to 387,756 _00352 OHPLBJKB_00353: OHPLBJKB_00353 - hypothetical protein, at 387,766 to 387,966 _00353 OHPLBJKB_00354: OHPLBJKB_00354 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD, at 388,061 to 388,651 _00354 OHPLBJKB_00355: OHPLBJKB_00355 - Protein SlyX, at 388,700 to 388,918 _00355 Position (kb) 387 388Strain fitness (log2 ratio) -2 -1 0 1 2at 386.775 kb on + strand, within OHPLBJKB_00352at 386.775 kb on + strand, within OHPLBJKB_00352at 386.775 kb on + strand, within OHPLBJKB_00352at 386.776 kb on - strand, within OHPLBJKB_00352at 386.812 kb on + strand, within OHPLBJKB_00352at 386.812 kb on + strand, within OHPLBJKB_00352at 386.813 kb on - strand, within OHPLBJKB_00352at 386.813 kb on - strand, within OHPLBJKB_00352at 386.813 kb on - strand, within OHPLBJKB_00352at 386.814 kb on + strand, within OHPLBJKB_00352at 386.837 kb on + strand, within OHPLBJKB_00352at 386.896 kb on + strand, within OHPLBJKB_00352at 386.896 kb on + strand, within OHPLBJKB_00352at 386.897 kb on - strand, within OHPLBJKB_00352at 386.907 kb on + strand, within OHPLBJKB_00352at 386.908 kb on - strand, within OHPLBJKB_00352at 386.908 kb on - strand, within OHPLBJKB_00352at 386.997 kb on - strand, within OHPLBJKB_00352at 387.081 kb on + strand, within OHPLBJKB_00352at 387.081 kb on + strand, within OHPLBJKB_00352at 387.082 kb on - strand, within OHPLBJKB_00352at 387.082 kb on - strand, within OHPLBJKB_00352at 387.082 kb on - strand, within OHPLBJKB_00352at 387.270 kb on + strand, within OHPLBJKB_00352at 387.275 kb on - strand, within OHPLBJKB_00352at 387.320 kb on + strand, within OHPLBJKB_00352at 387.321 kb on - strand, within OHPLBJKB_00352at 387.430 kb on - strand, within OHPLBJKB_00352at 387.470 kb on + strand, within OHPLBJKB_00352at 387.471 kb on - strand, within OHPLBJKB_00352at 387.471 kb on - strand, within OHPLBJKB_00352at 387.471 kb on - strand, within OHPLBJKB_00352at 387.473 kb on + strand, within OHPLBJKB_00352at 387.473 kb on + strand, within OHPLBJKB_00352at 387.473 kb on + strand, within OHPLBJKB_00352at 387.474 kb on - strand, within OHPLBJKB_00352at 387.650 kb on + strandat 387.849 kb on + strand, within OHPLBJKB_00353at 387.850 kb on - strand, within OHPLBJKB_00353at 387.858 kb on + strand, within OHPLBJKB_00353at 387.859 kb on - strand, within OHPLBJKB_00353at 387.859 kb on - strand, within OHPLBJKB_00353at 387.874 kb on - strand, within OHPLBJKB_00353at 387.970 kb on + strandat 387.992 kb on + strandat 387.993 kb on - strandat 387.993 kb on - strandat 388.035 kb on + strandat 388.035 kb on + strandat 388.058 kb on - strandat 388.058 kb on - strandat 388.058 kb on - strandat 388.068 kb on + strandat 388.104 kb on + strandat 388.104 kb on + strandat 388.105 kb on - strandat 388.105 kb on - strandat 388.108 kb on + strandat 388.108 kb on + strandat 388.108 kb on + strandat 388.108 kb on + strandat 388.109 kb on - strandat 388.109 kb on - strandat 388.161 kb on - strand, within OHPLBJKB_00354at 388.161 kb on - strand, within OHPLBJKB_00354at 388.262 kb on + strand, within OHPLBJKB_00354at 388.272 kb on - strand, within OHPLBJKB_00354at 388.301 kb on - strand, within OHPLBJKB_00354at 388.301 kb on - strand, within OHPLBJKB_00354at 388.308 kb on + strand, within OHPLBJKB_00354at 388.309 kb on - strand, within OHPLBJKB_00354at 388.309 kb on - strand, within OHPLBJKB_00354at 388.309 kb on - strand, within OHPLBJKB_00354at 388.309 kb on - strand, within OHPLBJKB_00354at 388.312 kb on + strand, within OHPLBJKB_00354at 388.335 kb on + strand, within OHPLBJKB_00354at 388.336 kb on - strand, within OHPLBJKB_00354at 388.336 kb on - strand, within OHPLBJKB_00354at 388.336 kb on - strand, within OHPLBJKB_00354at 388.336 kb on - strand, within OHPLBJKB_00354at 388.340 kb on - strand, within OHPLBJKB_00354at 388.410 kb on + strand, within OHPLBJKB_00354at 388.410 kb on + strand, within OHPLBJKB_00354at 388.649 kb on + strandat 388.650 kb on - strandat 388.650 kb on - strandat 388.653 kb on - strandat 388.695 kb on - strandat 388.763 kb on + strand, within OHPLBJKB_00355at 388.907 kb on + strandat 388.907 kb on + strandat 388.908 kb on - strandat 388.956 kb on - strandat 388.960 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
remove
386,775 + OHPLBJKB_00352 0.46 -0.7
386,775 + OHPLBJKB_00352 0.46 +0.6
386,775 + OHPLBJKB_00352 0.46 +0.0
386,776 - OHPLBJKB_00352 0.46 -0.8
386,812 + OHPLBJKB_00352 0.48 -0.6
386,812 + OHPLBJKB_00352 0.48 +0.5
386,813 - OHPLBJKB_00352 0.48 -0.6
386,813 - OHPLBJKB_00352 0.48 +0.9
386,813 - OHPLBJKB_00352 0.48 -0.3
386,814 + OHPLBJKB_00352 0.48 -0.2
386,837 + OHPLBJKB_00352 0.49 -0.0
386,896 + OHPLBJKB_00352 0.52 -0.6
386,896 + OHPLBJKB_00352 0.52 +0.3
386,897 - OHPLBJKB_00352 0.52 +0.2
386,907 + OHPLBJKB_00352 0.53 -0.0
386,908 - OHPLBJKB_00352 0.53 +0.2
386,908 - OHPLBJKB_00352 0.53 +0.4
386,997 - OHPLBJKB_00352 0.58 -0.9
387,081 + OHPLBJKB_00352 0.63 +0.4
387,081 + OHPLBJKB_00352 0.63 +0.3
387,082 - OHPLBJKB_00352 0.63 -0.8
387,082 - OHPLBJKB_00352 0.63 -0.6
387,082 - OHPLBJKB_00352 0.63 +0.0
387,270 + OHPLBJKB_00352 0.73 -0.1
387,275 - OHPLBJKB_00352 0.73 -0.2
387,320 + OHPLBJKB_00352 0.76 +2.3
387,321 - OHPLBJKB_00352 0.76 -0.7
387,430 - OHPLBJKB_00352 0.82 +1.1
387,470 + OHPLBJKB_00352 0.84 +0.4
387,471 - OHPLBJKB_00352 0.84 +0.4
387,471 - OHPLBJKB_00352 0.84 -1.1
387,471 - OHPLBJKB_00352 0.84 -0.9
387,473 + OHPLBJKB_00352 0.84 +0.6
387,473 + OHPLBJKB_00352 0.84 -0.4
387,473 + OHPLBJKB_00352 0.84 +1.1
387,474 - OHPLBJKB_00352 0.84 -1.1
387,650 + +0.5
387,849 + OHPLBJKB_00353 0.41 -0.2
387,850 - OHPLBJKB_00353 0.42 -1.1
387,858 + OHPLBJKB_00353 0.46 +0.0
387,859 - OHPLBJKB_00353 0.46 -0.7
387,859 - OHPLBJKB_00353 0.46 -0.1
387,874 - OHPLBJKB_00353 0.54 -0.9
387,970 + +0.8
387,992 + +0.9
387,993 - -1.5
387,993 - -0.9
388,035 + -1.0
388,035 + -1.7
388,058 - -0.4
388,058 - -0.7
388,058 - -1.6
388,068 + +0.9
388,104 + -1.0
388,104 + +0.0
388,105 - -1.2
388,105 - -0.1
388,108 + +2.0
388,108 + +0.2
388,108 + +0.2
388,108 + -0.7
388,109 - +0.1
388,109 - -0.4
388,161 - OHPLBJKB_00354 0.17 -0.3
388,161 - OHPLBJKB_00354 0.17 -0.2
388,262 + OHPLBJKB_00354 0.34 -0.6
388,272 - OHPLBJKB_00354 0.36 -0.6
388,301 - OHPLBJKB_00354 0.41 +0.8
388,301 - OHPLBJKB_00354 0.41 -0.9
388,308 + OHPLBJKB_00354 0.42 -0.8
388,309 - OHPLBJKB_00354 0.42 -1.2
388,309 - OHPLBJKB_00354 0.42 -1.2
388,309 - OHPLBJKB_00354 0.42 -0.2
388,309 - OHPLBJKB_00354 0.42 -1.9
388,312 + OHPLBJKB_00354 0.42 -0.4
388,335 + OHPLBJKB_00354 0.46 -0.7
388,336 - OHPLBJKB_00354 0.47 +0.5
388,336 - OHPLBJKB_00354 0.47 +1.3
388,336 - OHPLBJKB_00354 0.47 -0.1
388,336 - OHPLBJKB_00354 0.47 -1.2
388,340 - OHPLBJKB_00354 0.47 -0.8
388,410 + OHPLBJKB_00354 0.59 -0.1
388,410 + OHPLBJKB_00354 0.59 +0.3
388,649 + +0.1
388,650 - +0.0
388,650 - +0.8
388,653 - +0.2
388,695 - +0.6
388,763 + OHPLBJKB_00355 0.29 +0.0
388,907 + -1.0
388,907 + +0.6
388,908 - -0.2
388,956 - +0.1
388,960 - +0.7

Or see this region's nucleotide sequence