Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00299

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00297 and OHPLBJKB_00298 are separated by 227 nucleotidesOHPLBJKB_00298 and OHPLBJKB_00299 overlap by 4 nucleotidesOHPLBJKB_00299 and OHPLBJKB_00300 are separated by 75 nucleotides OHPLBJKB_00297: OHPLBJKB_00297 - Transcription elongation factor GreB, at 329,254 to 329,730 _00297 OHPLBJKB_00298: OHPLBJKB_00298 - Transcriptional regulatory protein OmpR, at 329,958 to 330,677 _00298 OHPLBJKB_00299: OHPLBJKB_00299 - Osmolarity sensor protein EnvZ, at 330,674 to 332,026 _00299 OHPLBJKB_00300: OHPLBJKB_00300 - Phosphoenolpyruvate carboxykinase (ATP), at 332,102 to 333,724 _00300 Position (kb) 330 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 329.677 kb on - strand, within OHPLBJKB_00297at 329.774 kb on - strandat 329.774 kb on - strandat 329.786 kb on + strandat 329.787 kb on - strandat 329.825 kb on + strandat 329.826 kb on - strandat 329.829 kb on + strandat 329.829 kb on + strandat 329.830 kb on - strandat 329.830 kb on - strandat 329.842 kb on - strandat 329.861 kb on + strandat 329.884 kb on + strandat 329.884 kb on + strandat 329.885 kb on - strandat 329.885 kb on - strandat 329.924 kb on + strandat 329.924 kb on + strandat 329.925 kb on - strandat 329.950 kb on + strandat 329.951 kb on - strandat 329.970 kb on + strandat 329.971 kb on - strandat 329.971 kb on - strandat 329.971 kb on - strandat 330.024 kb on + strandat 330.025 kb on - strandat 330.110 kb on + strand, within OHPLBJKB_00298at 330.110 kb on + strand, within OHPLBJKB_00298at 330.111 kb on - strand, within OHPLBJKB_00298at 330.111 kb on - strand, within OHPLBJKB_00298at 330.124 kb on + strand, within OHPLBJKB_00298at 330.125 kb on - strand, within OHPLBJKB_00298at 330.131 kb on - strand, within OHPLBJKB_00298at 330.131 kb on - strand, within OHPLBJKB_00298at 330.197 kb on + strand, within OHPLBJKB_00298at 330.198 kb on - strand, within OHPLBJKB_00298at 330.198 kb on - strand, within OHPLBJKB_00298at 330.235 kb on + strand, within OHPLBJKB_00298at 330.236 kb on - strand, within OHPLBJKB_00298at 330.262 kb on - strand, within OHPLBJKB_00298at 330.392 kb on + strand, within OHPLBJKB_00298at 330.393 kb on - strand, within OHPLBJKB_00298at 330.618 kb on + strandat 330.618 kb on + strandat 330.618 kb on + strandat 330.619 kb on - strandat 330.646 kb on - strandat 330.669 kb on - strandat 330.715 kb on + strandat 330.720 kb on + strandat 330.764 kb on + strandat 330.764 kb on + strandat 330.765 kb on - strandat 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.839 kb on - strand, within OHPLBJKB_00299at 330.986 kb on + strand, within OHPLBJKB_00299at 331.162 kb on + strand, within OHPLBJKB_00299at 331.163 kb on - strand, within OHPLBJKB_00299at 331.163 kb on - strand, within OHPLBJKB_00299at 331.207 kb on + strand, within OHPLBJKB_00299at 331.207 kb on + strand, within OHPLBJKB_00299at 331.264 kb on + strand, within OHPLBJKB_00299at 331.265 kb on - strand, within OHPLBJKB_00299at 331.339 kb on + strand, within OHPLBJKB_00299at 331.427 kb on - strand, within OHPLBJKB_00299at 331.487 kb on - strand, within OHPLBJKB_00299at 331.532 kb on + strand, within OHPLBJKB_00299at 331.532 kb on + strand, within OHPLBJKB_00299at 331.533 kb on - strand, within OHPLBJKB_00299at 331.576 kb on + strand, within OHPLBJKB_00299at 331.577 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.822 kb on + strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 331.823 kb on - strand, within OHPLBJKB_00299at 332.024 kb on + strandat 332.028 kb on + strandat 332.064 kb on + strandat 332.064 kb on + strandat 332.064 kb on + strandat 332.064 kb on + strandat 332.065 kb on - strandat 332.071 kb on + strandat 332.078 kb on + strandat 332.078 kb on + strandat 332.078 kb on + strandat 332.079 kb on - strandat 332.082 kb on + strandat 332.082 kb on + strandat 332.082 kb on + strandat 332.083 kb on - strandat 332.103 kb on + strandat 332.103 kb on + strandat 332.154 kb on + strandat 332.154 kb on + strandat 332.155 kb on - strandat 332.155 kb on - strandat 332.155 kb on - strandat 332.155 kb on - strandat 332.155 kb on - strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.226 kb on + strandat 332.227 kb on - strandat 332.227 kb on - strandat 332.259 kb on - strandat 332.369 kb on - strand, within OHPLBJKB_00300at 332.377 kb on + strand, within OHPLBJKB_00300at 332.378 kb on - strand, within OHPLBJKB_00300at 332.415 kb on + strand, within OHPLBJKB_00300at 332.415 kb on + strand, within OHPLBJKB_00300at 332.416 kb on - strand, within OHPLBJKB_00300at 332.416 kb on - strand, within OHPLBJKB_00300at 332.440 kb on + strand, within OHPLBJKB_00300at 332.440 kb on + strand, within OHPLBJKB_00300at 332.440 kb on + strand, within OHPLBJKB_00300at 332.441 kb on - strand, within OHPLBJKB_00300at 332.584 kb on - strand, within OHPLBJKB_00300at 332.653 kb on + strand, within OHPLBJKB_00300at 332.653 kb on + strand, within OHPLBJKB_00300at 332.654 kb on - strand, within OHPLBJKB_00300at 332.659 kb on + strand, within OHPLBJKB_00300at 332.660 kb on - strand, within OHPLBJKB_00300at 332.689 kb on + strand, within OHPLBJKB_00300at 332.698 kb on + strand, within OHPLBJKB_00300at 332.709 kb on + strand, within OHPLBJKB_00300at 332.709 kb on + strand, within OHPLBJKB_00300at 332.709 kb on + strand, within OHPLBJKB_00300at 332.709 kb on + strand, within OHPLBJKB_00300at 332.710 kb on - strand, within OHPLBJKB_00300at 332.710 kb on - strand, within OHPLBJKB_00300at 332.823 kb on + strand, within OHPLBJKB_00300at 332.823 kb on + strand, within OHPLBJKB_00300at 332.823 kb on + strand, within OHPLBJKB_00300at 332.824 kb on - strand, within OHPLBJKB_00300at 332.858 kb on - strand, within OHPLBJKB_00300at 332.888 kb on - strand, within OHPLBJKB_00300

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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329,677 - OHPLBJKB_00297 0.89 +0.5
329,774 - -1.0
329,774 - -0.2
329,786 + -0.6
329,787 - -1.3
329,825 + -0.5
329,826 - -1.3
329,829 + +0.7
329,829 + -0.4
329,830 - -0.7
329,830 - -0.2
329,842 - +0.3
329,861 + -1.0
329,884 + -0.6
329,884 + -0.6
329,885 - -1.3
329,885 - -1.7
329,924 + -1.1
329,924 + -0.0
329,925 - -0.8
329,950 + +0.0
329,951 - -0.4
329,970 + +0.7
329,971 - +0.0
329,971 - -0.5
329,971 - +2.3
330,024 + -1.7
330,025 - -1.1
330,110 + OHPLBJKB_00298 0.21 +0.6
330,110 + OHPLBJKB_00298 0.21 -0.1
330,111 - OHPLBJKB_00298 0.21 -1.0
330,111 - OHPLBJKB_00298 0.21 +0.3
330,124 + OHPLBJKB_00298 0.23 +0.3
330,125 - OHPLBJKB_00298 0.23 -1.8
330,131 - OHPLBJKB_00298 0.24 -0.7
330,131 - OHPLBJKB_00298 0.24 -2.4
330,197 + OHPLBJKB_00298 0.33 -0.5
330,198 - OHPLBJKB_00298 0.33 -0.5
330,198 - OHPLBJKB_00298 0.33 +0.0
330,235 + OHPLBJKB_00298 0.38 -1.4
330,236 - OHPLBJKB_00298 0.39 -0.5
330,262 - OHPLBJKB_00298 0.42 -0.6
330,392 + OHPLBJKB_00298 0.60 -0.1
330,393 - OHPLBJKB_00298 0.60 -0.8
330,618 + -1.7
330,618 + -0.5
330,618 + +0.0
330,619 - -0.7
330,646 - +1.0
330,669 - -1.6
330,715 + -1.3
330,720 + -1.0
330,764 + +0.4
330,764 + +0.6
330,765 - -0.7
330,838 + OHPLBJKB_00299 0.12 -2.0
330,838 + OHPLBJKB_00299 0.12 +0.1
330,838 + OHPLBJKB_00299 0.12 -0.6
330,838 + OHPLBJKB_00299 0.12 -1.5
330,839 - OHPLBJKB_00299 0.12 -1.0
330,986 + OHPLBJKB_00299 0.23 +0.3
331,162 + OHPLBJKB_00299 0.36 -1.6
331,163 - OHPLBJKB_00299 0.36 -0.7
331,163 - OHPLBJKB_00299 0.36 -1.0
331,207 + OHPLBJKB_00299 0.39 -0.7
331,207 + OHPLBJKB_00299 0.39 +0.6
331,264 + OHPLBJKB_00299 0.44 +1.2
331,265 - OHPLBJKB_00299 0.44 -0.7
331,339 + OHPLBJKB_00299 0.49 -0.7
331,427 - OHPLBJKB_00299 0.56 -1.7
331,487 - OHPLBJKB_00299 0.60 -0.0
331,532 + OHPLBJKB_00299 0.63 -1.9
331,532 + OHPLBJKB_00299 0.63 -0.6
331,533 - OHPLBJKB_00299 0.63 -0.4
331,576 + OHPLBJKB_00299 0.67 +1.1
331,577 - OHPLBJKB_00299 0.67 +0.3
331,585 - OHPLBJKB_00299 0.67 -0.5
331,585 - OHPLBJKB_00299 0.67 -0.5
331,585 - OHPLBJKB_00299 0.67 -1.7
331,822 + OHPLBJKB_00299 0.85 +0.3
331,822 + OHPLBJKB_00299 0.85 -0.0
331,822 + OHPLBJKB_00299 0.85 -0.7
331,822 + OHPLBJKB_00299 0.85 -2.3
331,822 + OHPLBJKB_00299 0.85 -1.0
331,822 + OHPLBJKB_00299 0.85 +1.3
331,822 + OHPLBJKB_00299 0.85 -0.4
331,822 + OHPLBJKB_00299 0.85 -0.2
331,823 - OHPLBJKB_00299 0.85 -0.8
331,823 - OHPLBJKB_00299 0.85 -0.8
331,823 - OHPLBJKB_00299 0.85 -2.2
331,823 - OHPLBJKB_00299 0.85 -1.6
331,823 - OHPLBJKB_00299 0.85 -0.7
331,823 - OHPLBJKB_00299 0.85 -0.3
331,823 - OHPLBJKB_00299 0.85 -2.1
331,823 - OHPLBJKB_00299 0.85 -1.8
331,823 - OHPLBJKB_00299 0.85 +0.9
331,823 - OHPLBJKB_00299 0.85 -1.2
332,024 + +0.9
332,028 + +0.2
332,064 + -0.5
332,064 + -0.5
332,064 + +0.7
332,064 + +0.4
332,065 - -0.1
332,071 + -0.1
332,078 + -0.3
332,078 + -0.3
332,078 + -0.6
332,079 - +0.6
332,082 + -0.2
332,082 + -0.1
332,082 + -1.0
332,083 - -0.1
332,103 + -0.2
332,103 + -1.0
332,154 + +0.7
332,154 + +0.2
332,155 - -1.4
332,155 - +1.3
332,155 - +1.8
332,155 - +0.1
332,155 - -1.3
332,226 + -2.3
332,226 + -0.4
332,226 + +1.1
332,226 + -0.4
332,226 + -0.3
332,226 + -1.3
332,226 + -0.1
332,226 + +0.5
332,227 - +0.3
332,227 - -0.0
332,259 - -1.8
332,369 - OHPLBJKB_00300 0.16 -0.0
332,377 + OHPLBJKB_00300 0.17 +0.6
332,378 - OHPLBJKB_00300 0.17 +0.5
332,415 + OHPLBJKB_00300 0.19 -0.2
332,415 + OHPLBJKB_00300 0.19 -0.0
332,416 - OHPLBJKB_00300 0.19 -0.4
332,416 - OHPLBJKB_00300 0.19 +0.7
332,440 + OHPLBJKB_00300 0.21 -0.3
332,440 + OHPLBJKB_00300 0.21 -1.9
332,440 + OHPLBJKB_00300 0.21 -1.4
332,441 - OHPLBJKB_00300 0.21 -0.0
332,584 - OHPLBJKB_00300 0.30 -1.5
332,653 + OHPLBJKB_00300 0.34 -0.4
332,653 + OHPLBJKB_00300 0.34 +0.3
332,654 - OHPLBJKB_00300 0.34 +1.2
332,659 + OHPLBJKB_00300 0.34 -0.4
332,660 - OHPLBJKB_00300 0.34 -0.1
332,689 + OHPLBJKB_00300 0.36 +0.3
332,698 + OHPLBJKB_00300 0.37 +0.2
332,709 + OHPLBJKB_00300 0.37 -1.3
332,709 + OHPLBJKB_00300 0.37 -0.3
332,709 + OHPLBJKB_00300 0.37 -0.1
332,709 + OHPLBJKB_00300 0.37 -1.0
332,710 - OHPLBJKB_00300 0.37 -0.1
332,710 - OHPLBJKB_00300 0.37 -0.9
332,823 + OHPLBJKB_00300 0.44 -0.8
332,823 + OHPLBJKB_00300 0.44 -0.0
332,823 + OHPLBJKB_00300 0.44 -0.5
332,824 - OHPLBJKB_00300 0.44 +0.5
332,858 - OHPLBJKB_00300 0.47 +0.2
332,888 - OHPLBJKB_00300 0.48 +0.3

Or see this region's nucleotide sequence