Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00119

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00118 and OHPLBJKB_00119 overlap by 4 nucleotidesOHPLBJKB_00119 and OHPLBJKB_00120 are separated by 123 nucleotides OHPLBJKB_00118: OHPLBJKB_00118 - Inner membrane protein YiaV, at 127,499 to 128,635 _00118 OHPLBJKB_00119: OHPLBJKB_00119 - hypothetical protein, at 128,632 to 129,606 _00119 OHPLBJKB_00120: OHPLBJKB_00120 - MltA-interacting protein, at 129,730 to 130,470 _00120 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.643 kb on + strand, within OHPLBJKB_00118at 127.643 kb on + strand, within OHPLBJKB_00118at 127.744 kb on + strand, within OHPLBJKB_00118at 127.771 kb on - strand, within OHPLBJKB_00118at 127.793 kb on + strand, within OHPLBJKB_00118at 127.843 kb on + strand, within OHPLBJKB_00118at 127.844 kb on - strand, within OHPLBJKB_00118at 127.869 kb on + strand, within OHPLBJKB_00118at 127.870 kb on - strand, within OHPLBJKB_00118at 127.870 kb on - strand, within OHPLBJKB_00118at 128.141 kb on + strand, within OHPLBJKB_00118at 128.141 kb on + strand, within OHPLBJKB_00118at 128.142 kb on - strand, within OHPLBJKB_00118at 128.142 kb on - strand, within OHPLBJKB_00118at 128.183 kb on + strand, within OHPLBJKB_00118at 128.183 kb on + strand, within OHPLBJKB_00118at 128.184 kb on - strand, within OHPLBJKB_00118at 128.184 kb on - strand, within OHPLBJKB_00118at 128.216 kb on + strand, within OHPLBJKB_00118at 128.217 kb on - strand, within OHPLBJKB_00118at 128.217 kb on - strand, within OHPLBJKB_00118at 128.217 kb on - strand, within OHPLBJKB_00118at 128.254 kb on + strand, within OHPLBJKB_00118at 128.254 kb on + strand, within OHPLBJKB_00118at 128.254 kb on + strand, within OHPLBJKB_00118at 128.255 kb on - strand, within OHPLBJKB_00118at 128.340 kb on + strand, within OHPLBJKB_00118at 128.340 kb on + strand, within OHPLBJKB_00118at 128.340 kb on + strand, within OHPLBJKB_00118at 128.341 kb on - strand, within OHPLBJKB_00118at 128.344 kb on + strand, within OHPLBJKB_00118at 128.345 kb on - strand, within OHPLBJKB_00118at 128.389 kb on + strand, within OHPLBJKB_00118at 128.414 kb on + strand, within OHPLBJKB_00118at 128.443 kb on - strand, within OHPLBJKB_00118at 128.487 kb on + strand, within OHPLBJKB_00118at 128.487 kb on + strand, within OHPLBJKB_00118at 128.488 kb on - strand, within OHPLBJKB_00118at 128.488 kb on - strand, within OHPLBJKB_00118at 128.488 kb on - strand, within OHPLBJKB_00118at 128.524 kb on + strandat 128.525 kb on - strandat 128.528 kb on + strandat 128.528 kb on + strandat 128.528 kb on + strandat 128.546 kb on + strandat 128.546 kb on + strandat 128.546 kb on + strandat 128.547 kb on - strandat 128.547 kb on - strandat 128.593 kb on - strandat 128.616 kb on - strandat 128.616 kb on - strandat 128.723 kb on + strandat 128.723 kb on + strandat 128.723 kb on + strandat 128.723 kb on + strandat 128.744 kb on + strand, within OHPLBJKB_00119at 128.918 kb on + strand, within OHPLBJKB_00119at 129.016 kb on - strand, within OHPLBJKB_00119at 129.068 kb on + strand, within OHPLBJKB_00119at 129.083 kb on + strand, within OHPLBJKB_00119at 129.147 kb on - strand, within OHPLBJKB_00119at 129.154 kb on + strand, within OHPLBJKB_00119at 129.155 kb on - strand, within OHPLBJKB_00119at 129.281 kb on + strand, within OHPLBJKB_00119at 129.285 kb on + strand, within OHPLBJKB_00119at 129.285 kb on + strand, within OHPLBJKB_00119at 129.286 kb on - strand, within OHPLBJKB_00119at 129.336 kb on + strand, within OHPLBJKB_00119at 129.336 kb on + strand, within OHPLBJKB_00119at 129.338 kb on + strand, within OHPLBJKB_00119at 129.392 kb on + strand, within OHPLBJKB_00119at 129.393 kb on - strand, within OHPLBJKB_00119at 129.393 kb on - strand, within OHPLBJKB_00119at 129.520 kb on + strandat 129.588 kb on + strandat 129.589 kb on - strandat 129.824 kb on - strand, within OHPLBJKB_00120at 129.879 kb on + strand, within OHPLBJKB_00120at 130.013 kb on - strand, within OHPLBJKB_00120at 130.033 kb on - strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.042 kb on - strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.045 kb on - strand, within OHPLBJKB_00120at 130.175 kb on + strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.213 kb on + strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.243 kb on + strand, within OHPLBJKB_00120at 130.244 kb on - strand, within OHPLBJKB_00120at 130.315 kb on + strand, within OHPLBJKB_00120at 130.379 kb on - strand, within OHPLBJKB_00120at 130.438 kb on - strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.579 kb on - strandat 130.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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127,643 + OHPLBJKB_00118 0.13 -0.4
127,643 + OHPLBJKB_00118 0.13 -1.9
127,744 + OHPLBJKB_00118 0.22 +0.5
127,771 - OHPLBJKB_00118 0.24 +0.1
127,793 + OHPLBJKB_00118 0.26 -0.5
127,843 + OHPLBJKB_00118 0.30 -0.1
127,844 - OHPLBJKB_00118 0.30 +0.3
127,869 + OHPLBJKB_00118 0.33 -0.2
127,870 - OHPLBJKB_00118 0.33 +0.0
127,870 - OHPLBJKB_00118 0.33 -0.3
128,141 + OHPLBJKB_00118 0.56 -0.7
128,141 + OHPLBJKB_00118 0.56 -1.0
128,142 - OHPLBJKB_00118 0.57 +0.3
128,142 - OHPLBJKB_00118 0.57 +0.4
128,183 + OHPLBJKB_00118 0.60 -0.1
128,183 + OHPLBJKB_00118 0.60 +1.1
128,184 - OHPLBJKB_00118 0.60 -0.0
128,184 - OHPLBJKB_00118 0.60 -0.5
128,216 + OHPLBJKB_00118 0.63 -0.7
128,217 - OHPLBJKB_00118 0.63 +0.3
128,217 - OHPLBJKB_00118 0.63 -0.2
128,217 - OHPLBJKB_00118 0.63 -0.5
128,254 + OHPLBJKB_00118 0.66 +0.6
128,254 + OHPLBJKB_00118 0.66 +0.0
128,254 + OHPLBJKB_00118 0.66 +0.0
128,255 - OHPLBJKB_00118 0.66 -1.8
128,340 + OHPLBJKB_00118 0.74 -0.7
128,340 + OHPLBJKB_00118 0.74 +0.3
128,340 + OHPLBJKB_00118 0.74 -0.8
128,341 - OHPLBJKB_00118 0.74 -0.2
128,344 + OHPLBJKB_00118 0.74 +0.1
128,345 - OHPLBJKB_00118 0.74 +0.2
128,389 + OHPLBJKB_00118 0.78 -1.5
128,414 + OHPLBJKB_00118 0.80 +0.0
128,443 - OHPLBJKB_00118 0.83 -0.7
128,487 + OHPLBJKB_00118 0.87 +0.2
128,487 + OHPLBJKB_00118 0.87 +0.7
128,488 - OHPLBJKB_00118 0.87 +0.2
128,488 - OHPLBJKB_00118 0.87 +3.2
128,488 - OHPLBJKB_00118 0.87 -0.3
128,524 + -0.4
128,525 - -0.5
128,528 + +0.6
128,528 + +0.4
128,528 + +0.2
128,546 + +0.1
128,546 + +0.0
128,546 + +0.3
128,547 - +0.2
128,547 - +0.6
128,593 - +0.3
128,616 - -0.7
128,616 - -0.5
128,723 + -0.5
128,723 + -0.8
128,723 + +0.4
128,723 + -0.7
128,744 + OHPLBJKB_00119 0.11 +0.3
128,918 + OHPLBJKB_00119 0.29 -1.8
129,016 - OHPLBJKB_00119 0.39 -0.3
129,068 + OHPLBJKB_00119 0.45 -0.1
129,083 + OHPLBJKB_00119 0.46 +0.0
129,147 - OHPLBJKB_00119 0.53 -1.1
129,154 + OHPLBJKB_00119 0.54 -0.1
129,155 - OHPLBJKB_00119 0.54 -0.2
129,281 + OHPLBJKB_00119 0.67 -0.6
129,285 + OHPLBJKB_00119 0.67 -0.3
129,285 + OHPLBJKB_00119 0.67 -0.1
129,286 - OHPLBJKB_00119 0.67 -0.4
129,336 + OHPLBJKB_00119 0.72 -0.2
129,336 + OHPLBJKB_00119 0.72 -0.2
129,338 + OHPLBJKB_00119 0.72 -1.5
129,392 + OHPLBJKB_00119 0.78 -0.4
129,393 - OHPLBJKB_00119 0.78 +0.1
129,393 - OHPLBJKB_00119 0.78 -2.6
129,520 + -0.7
129,588 + +0.0
129,589 - +0.2
129,824 - OHPLBJKB_00120 0.13 -1.1
129,879 + OHPLBJKB_00120 0.20 -0.9
130,013 - OHPLBJKB_00120 0.38 -1.2
130,033 - OHPLBJKB_00120 0.41 -1.3
130,041 + OHPLBJKB_00120 0.42 -0.8
130,041 + OHPLBJKB_00120 0.42 +0.6
130,042 - OHPLBJKB_00120 0.42 -0.1
130,044 + OHPLBJKB_00120 0.42 -0.4
130,044 + OHPLBJKB_00120 0.42 +0.3
130,045 - OHPLBJKB_00120 0.43 -0.2
130,175 + OHPLBJKB_00120 0.60 +0.2
130,176 - OHPLBJKB_00120 0.60 -0.5
130,176 - OHPLBJKB_00120 0.60 -1.2
130,176 - OHPLBJKB_00120 0.60 +0.1
130,213 + OHPLBJKB_00120 0.65 -0.3
130,214 - OHPLBJKB_00120 0.65 +0.5
130,214 - OHPLBJKB_00120 0.65 -0.3
130,214 - OHPLBJKB_00120 0.65 +1.2
130,214 - OHPLBJKB_00120 0.65 +0.7
130,214 - OHPLBJKB_00120 0.65 +1.0
130,216 + OHPLBJKB_00120 0.66 -0.7
130,216 + OHPLBJKB_00120 0.66 -0.1
130,237 + OHPLBJKB_00120 0.68 +0.2
130,237 + OHPLBJKB_00120 0.68 +0.2
130,237 + OHPLBJKB_00120 0.68 -0.7
130,238 - OHPLBJKB_00120 0.69 -0.8
130,238 - OHPLBJKB_00120 0.69 +0.3
130,240 + OHPLBJKB_00120 0.69 -0.8
130,240 + OHPLBJKB_00120 0.69 -2.1
130,240 + OHPLBJKB_00120 0.69 +1.3
130,241 - OHPLBJKB_00120 0.69 +0.7
130,241 - OHPLBJKB_00120 0.69 -0.9
130,241 - OHPLBJKB_00120 0.69 -1.7
130,243 + OHPLBJKB_00120 0.69 +0.1
130,244 - OHPLBJKB_00120 0.69 -0.8
130,315 + OHPLBJKB_00120 0.79 +1.5
130,379 - OHPLBJKB_00120 0.88 +0.0
130,438 - +1.1
130,468 + +0.6
130,468 + -0.5
130,579 - -0.6
130,579 - +0.3

Or see this region's nucleotide sequence