Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00108

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00106 and OHPLBJKB_00107 are separated by 11 nucleotidesOHPLBJKB_00107 and OHPLBJKB_00108 are separated by 47 nucleotidesOHPLBJKB_00108 and OHPLBJKB_00109 are separated by 20 nucleotides OHPLBJKB_00106: OHPLBJKB_00106 - hypothetical protein, at 115,732 to 116,193 _00106 OHPLBJKB_00107: OHPLBJKB_00107 - hypothetical protein, at 116,205 to 117,143 _00107 OHPLBJKB_00108: OHPLBJKB_00108 - Protein YibA, at 117,191 to 118,033 _00108 OHPLBJKB_00109: OHPLBJKB_00109 - hypothetical protein, at 118,054 to 119,142 _00109 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 116.206 kb on + strandat 116.243 kb on + strandat 116.307 kb on - strand, within OHPLBJKB_00107at 116.307 kb on - strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.430 kb on - strand, within OHPLBJKB_00107at 116.542 kb on + strand, within OHPLBJKB_00107at 116.548 kb on - strand, within OHPLBJKB_00107at 116.589 kb on - strand, within OHPLBJKB_00107at 116.634 kb on - strand, within OHPLBJKB_00107at 116.636 kb on + strand, within OHPLBJKB_00107at 116.649 kb on + strand, within OHPLBJKB_00107at 116.661 kb on - strand, within OHPLBJKB_00107at 116.686 kb on - strand, within OHPLBJKB_00107at 116.709 kb on + strand, within OHPLBJKB_00107at 116.715 kb on + strand, within OHPLBJKB_00107at 116.741 kb on - strand, within OHPLBJKB_00107at 116.848 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 117.179 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.259 kb on + strandat 117.259 kb on + strandat 117.263 kb on + strandat 117.263 kb on + strandat 117.472 kb on - strand, within OHPLBJKB_00108at 117.608 kb on - strand, within OHPLBJKB_00108at 118.150 kb on + strandat 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.211 kb on - strand, within OHPLBJKB_00109at 118.211 kb on - strand, within OHPLBJKB_00109at 118.213 kb on + strand, within OHPLBJKB_00109at 118.213 kb on + strand, within OHPLBJKB_00109at 118.267 kb on + strand, within OHPLBJKB_00109at 118.276 kb on + strand, within OHPLBJKB_00109at 118.277 kb on - strand, within OHPLBJKB_00109at 118.277 kb on - strand, within OHPLBJKB_00109at 118.279 kb on - strand, within OHPLBJKB_00109at 118.282 kb on + strand, within OHPLBJKB_00109at 118.282 kb on + strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.288 kb on + strand, within OHPLBJKB_00109at 118.309 kb on + strand, within OHPLBJKB_00109at 118.310 kb on - strand, within OHPLBJKB_00109at 118.339 kb on - strand, within OHPLBJKB_00109at 118.339 kb on - strand, within OHPLBJKB_00109at 118.465 kb on - strand, within OHPLBJKB_00109at 118.465 kb on - strand, within OHPLBJKB_00109at 118.560 kb on - strand, within OHPLBJKB_00109at 118.560 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.601 kb on + strand, within OHPLBJKB_00109at 118.602 kb on - strand, within OHPLBJKB_00109at 118.679 kb on + strand, within OHPLBJKB_00109at 118.679 kb on + strand, within OHPLBJKB_00109at 118.751 kb on + strand, within OHPLBJKB_00109at 118.751 kb on + strand, within OHPLBJKB_00109at 118.779 kb on - strand, within OHPLBJKB_00109at 118.779 kb on - strand, within OHPLBJKB_00109

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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116,206 + -0.5
116,243 + -0.6
116,307 - OHPLBJKB_00107 0.11 +0.3
116,307 - OHPLBJKB_00107 0.11 -0.8
116,372 + OHPLBJKB_00107 0.18 -0.1
116,372 + OHPLBJKB_00107 0.18 +0.0
116,430 - OHPLBJKB_00107 0.24 -0.1
116,542 + OHPLBJKB_00107 0.36 -0.7
116,548 - OHPLBJKB_00107 0.37 -0.1
116,589 - OHPLBJKB_00107 0.41 -0.5
116,634 - OHPLBJKB_00107 0.46 -1.2
116,636 + OHPLBJKB_00107 0.46 -1.1
116,649 + OHPLBJKB_00107 0.47 -0.4
116,661 - OHPLBJKB_00107 0.49 -0.3
116,686 - OHPLBJKB_00107 0.51 -0.3
116,709 + OHPLBJKB_00107 0.54 +0.6
116,715 + OHPLBJKB_00107 0.54 +1.8
116,741 - OHPLBJKB_00107 0.57 -1.0
116,848 + OHPLBJKB_00107 0.68 -0.8
116,926 + OHPLBJKB_00107 0.77 -0.5
116,926 + OHPLBJKB_00107 0.77 +0.9
117,179 - -0.7
117,256 + -2.0
117,256 + -0.1
117,256 + +0.5
117,256 + -0.4
117,256 + +0.3
117,257 - -2.1
117,259 + -0.5
117,259 + -0.5
117,263 + -0.4
117,263 + +0.9
117,472 - OHPLBJKB_00108 0.33 +0.4
117,608 - OHPLBJKB_00108 0.49 -1.4
118,150 + +0.6
118,210 + OHPLBJKB_00109 0.14 -1.1
118,210 + OHPLBJKB_00109 0.14 -1.1
118,210 + OHPLBJKB_00109 0.14 -1.9
118,210 + OHPLBJKB_00109 0.14 +0.7
118,210 + OHPLBJKB_00109 0.14 -0.4
118,210 + OHPLBJKB_00109 0.14 +0.4
118,210 + OHPLBJKB_00109 0.14 -0.3
118,211 - OHPLBJKB_00109 0.14 +0.4
118,211 - OHPLBJKB_00109 0.14 +0.2
118,213 + OHPLBJKB_00109 0.15 -0.1
118,213 + OHPLBJKB_00109 0.15 +0.9
118,267 + OHPLBJKB_00109 0.20 +0.2
118,276 + OHPLBJKB_00109 0.20 +0.4
118,277 - OHPLBJKB_00109 0.20 -0.5
118,277 - OHPLBJKB_00109 0.20 -0.4
118,279 - OHPLBJKB_00109 0.21 -0.3
118,282 + OHPLBJKB_00109 0.21 +0.3
118,282 + OHPLBJKB_00109 0.21 +1.3
118,283 - OHPLBJKB_00109 0.21 -0.3
118,283 - OHPLBJKB_00109 0.21 -1.3
118,283 - OHPLBJKB_00109 0.21 -0.0
118,283 - OHPLBJKB_00109 0.21 -2.4
118,288 + OHPLBJKB_00109 0.21 -0.7
118,309 + OHPLBJKB_00109 0.23 -0.7
118,310 - OHPLBJKB_00109 0.24 +0.6
118,339 - OHPLBJKB_00109 0.26 +0.9
118,339 - OHPLBJKB_00109 0.26 +1.3
118,465 - OHPLBJKB_00109 0.38 +0.1
118,465 - OHPLBJKB_00109 0.38 -0.3
118,560 - OHPLBJKB_00109 0.46 +0.9
118,560 - OHPLBJKB_00109 0.46 -0.3
118,578 - OHPLBJKB_00109 0.48 +0.3
118,578 - OHPLBJKB_00109 0.48 +0.6
118,578 - OHPLBJKB_00109 0.48 -0.3
118,601 + OHPLBJKB_00109 0.50 -0.2
118,602 - OHPLBJKB_00109 0.50 -0.0
118,679 + OHPLBJKB_00109 0.57 +2.1
118,679 + OHPLBJKB_00109 0.57 +0.2
118,751 + OHPLBJKB_00109 0.64 -1.1
118,751 + OHPLBJKB_00109 0.64 -0.2
118,779 - OHPLBJKB_00109 0.67 +0.5
118,779 - OHPLBJKB_00109 0.67 -0.0

Or see this region's nucleotide sequence